[Commits] [svn:einsteintoolkit] Paper_EinsteinToolkit_2010/ (Rev. 131)
knarf at cct.lsu.edu
knarf at cct.lsu.edu
Mon Sep 12 23:29:02 CDT 2011
User: knarf
Date: 2011/09/12 11:29 PM
Added:
/examples/tov/
mode_spectrum.py
Removed:
/examples/tov/
mode_labels.sh, mode_spectrum.plot, mode_spectrum.svg, modes.dat
Modified:
/examples/tov/
make_plots.sh, mode_spectrum.pdf
Log:
use matplotlib for mode plot, calculate psd on the fly, including overlap with Hanning window, padding and linear detrending
Directory Changes:
Directory: /svn:executable/
===========================
+ *
File Changes:
Directory: /examples/tov/
=========================
File [modified]: make_plots.sh
Delta lines: +1 -2
===================================================================
--- examples/tov/make_plots.sh 2011-09-09 18:23:23 UTC (rev 130)
+++ examples/tov/make_plots.sh 2011-09-13 04:29:02 UTC (rev 131)
@@ -1,4 +1,3 @@
-gnuplot < mode_spectrum.plot
-inkscape -A mode_spectrum.pdf mode_spectrum.svg
+./mode_spectrum.py
gnuplot < rho_max.plot
inkscape -A rho_max.pdf rho_max.svg
File [removed]: mode_labels.sh
Delta lines: +0 -1
===================================================================
--- examples/tov/mode_labels.sh 2011-09-09 18:23:23 UTC (rev 130)
+++ examples/tov/mode_labels.sh 2011-09-13 04:29:02 UTC (rev 131)
@@ -1 +0,0 @@
-perl -ane 'if ($F[2]) { print "set label \"$F[2]\" at ".($F[0]-0.15).",2.e-6\n"; }' modes.dat
File [modified]: mode_spectrum.pdf
Delta lines: +0 -0
===================================================================
(Binary files differ)
File [removed]: mode_spectrum.plot
Delta lines: +0 -13
===================================================================
--- examples/tov/mode_spectrum.plot 2011-09-09 18:23:23 UTC (rev 130)
+++ examples/tov/mode_spectrum.plot 2011-09-13 04:29:02 UTC (rev 131)
@@ -1,13 +0,0 @@
-set size ratio 0.3
-set term svg enhanced size 600,250
-set output 'mode_spectrum.svg'
-set xlabel 'f/[kHz]'
-set xtics 2 nomirror
-set mxtics 2
-set x2tics scale 0
-set ylabel 'PSD'
-set ytics 10
-#load '<./mode_labels.sh'
-plot [:10][:-50] '<bzcat tov_2/hydrobase::rho.maximum.asc.spectrum.bz2' u ($1/1000):(10*log10($2)) w lp t '', \
-'<sed -e ''s/\(.*\)/\1 -80\n\1 -50\n/g'' modes.dat' u 1:3 w l t '', \
-'modes.dat' u 1:(0):x2ticlabels(2) w l t ''
File [added]: mode_spectrum.py
Delta lines: +105 -0
===================================================================
--- examples/tov/mode_spectrum.py (rev 0)
+++ examples/tov/mode_spectrum.py 2011-09-13 04:29:02 UTC (rev 131)
@@ -0,0 +1,105 @@
+#!/usr/bin/python
+
+# Compute power spectral density of given data
+import numpy as np
+import matplotlib.pyplot as plt
+import matplotlib.ticker as mticker
+
+from matplotlib import rc
+from matplotlib.mlab import detrend_linear
+
+# stuff
+fontsize = 20
+xlim = (0,10)
+ylim = (-140,-100)
+rc('text', usetex=True)
+rc('font', family='serif')
+rc('font', serif='palatino')
+rc('font', weight='bolder')
+rc('mathtext', default='sf')
+rc("lines", markeredgewidth=1)
+rc("lines", linewidth=3)
+rc('axes', labelsize=fontsize)
+rc("axes", linewidth=2)
+rc('xtick', labelsize=fontsize)
+rc('ytick', labelsize=fontsize)
+rc('legend', fontsize=fontsize)
+rc('xtick.major', pad=8)
+rc('ytick.major', pad=8)
+
+def set_tick_sizes(ax, major, minor):
+ for l in ax.get_xticklines() + ax.get_yticklines():
+ l.set_markersize(major)
+ for tick in ax.xaxis.get_minor_ticks() + ax.yaxis.get_minor_ticks():
+ tick.tick1line.set_markersize(minor)
+ tick.tick2line.set_markersize(minor)
+ ax.xaxis.LABELPAD=10.
+ ax.xaxis.OFFSETTEXTPAD=10.
+
+# constants
+G = 6.673e-11
+c = 299792458
+M_sol = 1.98892e30
+# convertion factors
+M_to_ms = 1./(1000*M_sol*G/(c*c*c))
+
+# load data
+Fx, Fy = np.loadtxt("tov_2/hydrobase::rho.maximum.asc.bz2", comments="#", usecols=(1,2), unpack=True)
+dt = M_to_ms/(Fx[1]-Fx[0])
+
+# slice data if wanted
+start = 0.0
+end = 1.
+Fx = Fx[int(start*len(Fx)): int(end*len(Fx))]
+Fy = Fy[int(start*len(Fy)): int(end*len(Fy))]
+
+# Plot basics
+fig = plt.figure()
+fig.subplots_adjust(hspace=0.45, wspace=0.3, left=0.15, bottom=0.15)
+ax = fig.add_subplot(1,1,1)
+
+# mode names and frequencies
+modes = {
+"F" : 1.44252691528028,
+"H1": 3.95408396916149,
+"H2": 5.91494894170517,
+"H3": 7.77382493405710,
+"H4": 9.58768293806276,
+"H5": 11.3772129983097,
+"H6": 13.1520241905666,
+"H7": 14.9172321735655,
+}
+
+# plot modes as vertical lines and label them
+for mode, freq in modes.items():
+ ax.plot((freq,freq), ylim, 'b--')
+ ax.text(freq-0.1, ylim[1]+1, mode, fontsize=fontsize)
+#ax.plot((2*modes["F"], 2*modes["F"]), (-200,0), 'g--')
+#ax.plot((3*modes["F"], 3*modes["F"]), (-200,0), 'g--')
+#ax.plot((4*modes["F"], 4*modes["F"]), (-200,0), 'g--')
+
+# plot PSD
+frac = 0.5 * len(Fy)
+ax.psd(Fy, NFFT=int(frac), pad_to=5*int(frac), noverlap=int(frac*0.5), detrend=detrend_linear, Fs=dt, linestyle='-', color='black', scale_by_freq=False)
+#ax.psd(Fy, NFFT=int(len(Fy)*frac), pad_to=10*int(len(Fy)*frac), noverlap=int(len(Fy)*frac*0.50), detrend=detrend_linear, Fs=M_to_ms/(Fx[1]-Fx[0]), linestyle='-', marker='x', color='red')
+
+# plot properties
+ax.set_xlim(xlim)
+ax.set_ylim(ylim)
+
+#plt.title('PSD', fontsize=fontsize)
+ax.set_xlabel(r'$f$ [kHz]')
+ax.set_ylabel(r'PSD [dB/Hz]')
+
+ax.xaxis.set_major_locator(mticker.MaxNLocator(10))
+ax.xaxis.set_minor_locator(mticker.MaxNLocator(20))
+ax.xaxis.grid(False)
+ax.yaxis.set_major_locator(mticker.MaxNLocator(5))
+ax.yaxis.set_minor_locator(mticker.MaxNLocator(9))
+ax.yaxis.grid(False)
+set_tick_sizes(ax, 8, 4)
+
+
+#plt.show()
+plt.savefig('mode_spectrum.pdf')
+
Property changes on: examples/tov/mode_spectrum.py
___________________________________________________________________
File [removed]: mode_spectrum.svg
Delta lines: +0 -210
===================================================================
--- examples/tov/mode_spectrum.svg 2011-09-09 18:23:23 UTC (rev 130)
+++ examples/tov/mode_spectrum.svg 2011-09-13 04:29:02 UTC (rev 131)
@@ -1,210 +0,0 @@
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- <use xlink:href='#gpPt0' transform='translate(571.6,113.8) scale(4.50)'/>
- <use xlink:href='#gpPt0' transform='translate(579.2,116.6) scale(4.50)'/>
-</g>
-<g style="fill:none; color:green; stroke:currentColor; stroke-width:1.00; stroke-linecap:butt; stroke-linejoin:miter">
- <path d='M164.0,128.9 L164.0,40.8 M286.9,128.9 L286.9,40.8 M382.8,128.9 L382.8,40.8 M473.8,128.9 L473.8,40.8
- M562.5,128.9 L562.5,40.8 '></path>
-</g>
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- <path d='M93.4,40.8 L93.4,187.6 L582.7,187.6 L582.7,40.8 L93.4,40.8 Z '></path>
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-
File [removed]: modes.dat
Delta lines: +0 -8
===================================================================
--- examples/tov/modes.dat 2011-09-09 18:23:23 UTC (rev 130)
+++ examples/tov/modes.dat 2011-09-13 04:29:02 UTC (rev 131)
@@ -1,8 +0,0 @@
-1.44252691528028 F
-3.95408396916149 H1
-5.91494894170517 H2
-7.77382493405710 H3
-9.58768293806276 H4
-11.3772129983097 H5
-13.1520241905666 H6
-14.9172321735655 H7
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