[Test] Build failed in Jenkins: EinsteinToolkitDoc #758

Wed Feb 19 12:10:27 CST 2020

See <https://build.barrywardell.net/job/EinsteinToolkitDoc/758/display/redirect?page=changes>

Changes:

[Einstein Toolkit Git Server] Updated submodules:


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Started by an SCM change
Running as SYSTEM
[EnvInject] - Loading node environment variables.
Building remotely on ncsa (slave large) in workspace <https://build.barrywardell.net/job/EinsteinToolkitDoc/ws/>
No credentials specified
 > git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://bitbucket.org/einsteintoolkit/einsteintoolkit.git # timeout=10
Fetching upstream changes from https://bitbucket.org/einsteintoolkit/einsteintoolkit.git
 > git --version # timeout=10
 > git fetch --tags --progress https://bitbucket.org/einsteintoolkit/einsteintoolkit.git +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git rev-parse origin/master^{commit} # timeout=10
Checking out Revision facfd5d42bb8747f7ff38ea98b070fa7edd996aa (origin/master)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f facfd5d42bb8747f7ff38ea98b070fa7edd996aa # timeout=10
Commit message: "Updated submodules:"
 > git rev-list --no-walk 1e272b5c9183a96f25ba6247f0a6ae990d0f543e # timeout=10
 > git tag -a -f -m Jenkins Build #758 jenkins-EinsteinToolkitDoc-758 # timeout=10
[EinsteinToolkitDoc] $ /bin/bash /tmp/jenkins2022486244896519369.sh
Synchronizing submodule url for 'arrangements/CTThorns'
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Entering 'arrangements/CTThorns'
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Entering 'arrangements/EinsteinAnalysis'
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Entering 'arrangements/EinsteinExamples'
Entering 'arrangements/EinsteinInitialData'
Entering 'arrangements/EinsteinUtils'
Entering 'arrangements/ExternalLibraries/BLAS'
Entering 'arrangements/ExternalLibraries/FFTW3'
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Entering 'utils'
Submodule path 'flesh': checked out 'ac461ced5f946af81bd049f4f3b32f191afec64c'
Entering 'arrangements/CTThorns'
HEAD is now at d3c9278 CT_MultiLevel: move LaTeX macros after THORNGUIDE marker
Entering 'arrangements/CactusBase'
HEAD is now at b8a831f Boundary: do not use sprintf with buffer that may be too small
Entering 'arrangements/CactusConnect'
HEAD is now at ed05d31 HTTPD: check HAVE_CAPABILITY_PTHREADS instad of CCTK_PTHREADS
Entering 'arrangements/CactusDoc/CoreDoc'
HEAD is now at 2c601ef add *.ccl files and src/make.code.defn
Entering 'arrangements/CactusElliptic'
HEAD is now at daeeadc EllBase: fix handling of 64bit Fortran string lengths
Entering 'arrangements/CactusExamples'
HEAD is now at fe04a29 Merge branch 'master' of https://bitbucket.org/cactuscode/cactusexamples
Entering 'arrangements/CactusIO'
HEAD is now at cb8c7d2 IOJpeg: Handle CCTK_INT!=int
Entering 'arrangements/CactusNumerical'
HEAD is now at 3039a0c RotatingSymmetry90: support Cactus vectors as 4-vectors
Entering 'arrangements/CactusPUGH'
HEAD is now at 1df75fd PUGH: Initialize new cGH fields ���cctk_alignment��� and ���cctk_alignment_offset���
Entering 'arrangements/CactusPUGHIO'
HEAD is now at 63f958b IOHDF5: update checkpoint file after WaveToyC SYNC update
Entering 'arrangements/CactusTest'
HEAD is now at 6879c4f TestPar: test cbrt function
Entering 'arrangements/CactusUtils'
HEAD is now at ff8e96f Formaline: mark tarballs as INTERMEDIATE rather than PRECIOUS
Entering 'arrangements/CactusWave'
HEAD is now at b8a67d4 WaveToyF90: SYNC when selecting BCs, run BCs more often
Entering 'arrangements/EinsteinAnalysis'
HEAD is now at 914cb4b AHFinderDirect: allow up to 3 timelevels for backwards compatibility
Entering 'arrangements/EinsteinBase'
HEAD is now at 2eba166 StaticConformal: Use cctk_ash instead of cctk_lsh where necessary
Entering 'arrangements/EinsteinEOS'
HEAD is now at 836d72d EOS_Omni: allow only sane parameter ranges in param.ccl
Entering 'arrangements/EinsteinEvolve'
HEAD is now at 45db182 GRHydro: respect CPPFLAGS when building utilities
Entering 'arrangements/EinsteinExamples'
HEAD is now at 1f7de20 use GRHydro::sources_spatial_order in examples using GRHydro
Entering 'arrangements/EinsteinInitialData'
HEAD is now at 3c861d2 Hydro_RNSID: make documentation adhere to Cactus requirements
Entering 'arrangements/EinsteinUtils'
HEAD is now at aabd1ed SetMask_SphericalSurface: add ParamCheck routine
Entering 'arrangements/ExternalLibraries/BLAS'
HEAD is now at aa1b84c BLAS: correct name of tarball file used when checking deps
Entering 'arrangements/ExternalLibraries/FFTW3'
HEAD is now at 1775b2b FFTW3: force libdir when building from source
Entering 'arrangements/ExternalLibraries/GSL'
HEAD is now at 2c76b3e Prevent accidental library builds
Entering 'arrangements/ExternalLibraries/HDF5'
HEAD is now at 0d01753 HDF5: updated included tarball to 1.10.5
Entering 'arrangements/ExternalLibraries/LAPACK'
HEAD is now at 172fcb7 LAPACK: correct name of tarball file used when checking deps
Entering 'arrangements/ExternalLibraries/LORENE'
HEAD is now at d982610 LORENE: remove manual handling of OpenMP flags
Entering 'arrangements/ExternalLibraries/MPI'
HEAD is now at f90a8ac MPI: update included tarball to 4.0.2
Entering 'arrangements/ExternalLibraries/OpenBLAS'
HEAD is now at cf871fc Update to version 0.2.19
Entering 'arrangements/ExternalLibraries/OpenCL'
HEAD is now at 23c9ebc Support Cygwin
Entering 'arrangements/ExternalLibraries/OpenSSL'
HEAD is now at 80db32c Support Cygwin
Entering 'arrangements/ExternalLibraries/PAPI'
HEAD is now at f484c85 PAPI: detect ifort based on its --version output
Entering 'arrangements/ExternalLibraries/PETSc'
HEAD is now at 89b5ec9 PETSc: use directory containing mpi.h as MPI_INC_DIRS
Entering 'arrangements/ExternalLibraries/hwloc'
HEAD is now at 5155046 hwloc: update included tarball to 2.0.1 (#1)
Entering 'arrangements/ExternalLibraries/libjpeg'
HEAD is now at 074a613 libjpeg: force libdir when compiling from source
Entering 'arrangements/ExternalLibraries/pciutils'
HEAD is now at ad7ec08 pciutils: remove unused patch files
Entering 'arrangements/ExternalLibraries/pthreads'
HEAD is now at 824b838 add more architectures: lib/i386-linux-gnu lib/arm-linux-gnueabihf
Entering 'arrangements/ExternalLibraries/zlib'
HEAD is now at dc4a17a Support Cygwin
Entering 'arrangements/Lean'
HEAD is now at 68f6f2c LeanBSSNMoL [Basegrid]: set the symmetries of rhs_lapse and rhs_shift
Entering 'arrangements/Llama'
HEAD is now at fb20ce8 Coordinates: provide Util_GetPhysicalBoundaries Util_GetGridRanges
Entering 'arrangements/Numerical'
HEAD is now at 273e500 AEILocalInterp: Replace deprecated use of finite with isfinite
Entering 'arrangements/PITTNullCode'
HEAD is now at 4cf65b4 SphericalHarmonciRecon: do not assume that hid_t is int
Entering 'arrangements/Proca'
HEAD is now at 3f3550e ProcaBase: add Cactus README file
Entering 'arrangements/WVUThorns'
HEAD is now at 0292a3f ID_converter_ILGRMHD/src: Remove temporary file that was accidentally committed
Entering 'arrangements/WVUThorns_Diagnostics'
HEAD is now at 052fb20 WVUThorns_Diagnostics/VolumeIntegrals_GRMHD/param.ccl: Increase the default Gamma speed limit and add description.
Entering 'flesh'
HEAD is now at ac461ce Cactus: mention \gitrevision macro in thorndoc template
Entering 'manifest'
HEAD is now at 5f6910e einsteintoolkit.bib: add many papers
Entering 'repos/CRL'
HEAD is now at d2e2554 GetComponents: support whitespace in directory paths
Entering 'repos/EinsteinExact'
HEAD is now at db5ac32 EinsteinExact: Regenerate code with new Kranc -- no functionality change
Entering 'repos/Kranc'
HEAD is now at bf2aa69 Kranc: document profile option in usage
Entering 'repos/McLachlan'
HEAD is now at 2c40282 McLachlan: use Cactus thorn guide style file
Entering 'repos/carpet'
HEAD is now at 5ec762c CarpetRegrid: prefix data<T> with CarpetLib namespace
Entering 'simfactory'
HEAD is now at a5f0e5c simdb: skip checking machine entries until defs.local.ini exists
Entering 'utils'
HEAD is now at c42dcf3 update Cactus thornlists
Creating user documentation (HTML)
  Converting figures to postscript
  Running htlatex....
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Makefile:1042: recipe for target 'UsersGuideHTML' failed
make: *** [UsersGuideHTML] Error 1
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Archiving artifacts