[ET Trac] [Einstein Toolkit] #434: Keep track of masked-out volume in CarpetMask

[Einstein Toolkit]

#434: Keep track of masked-out volume in CarpetMask
--------------------------+-------------------------------------------------
  Reporter:  eschnett     |       Owner:  eschnett  
      Type:  enhancement  |      Status:  review    
  Priority:  blocker      |   Milestone:  ET_2012_11
 Component:  Carpet       |     Version:            
Resolution:               |    Keywords:            
--------------------------+-------------------------------------------------

Comment (by rhaas):

 Applying only comment:22 does not help. There still is a segfault. The
 backtrace is:
 {{{
 (gdb) bt
 #0  0x0000000002c4cc19 in opal_memory_ptmalloc2_int_free ()
 #1  0x0000000002c4d25b in opal_memory_ptmalloc2_free_hook ()
 #2  0x00002b68c06ac261 in free () from /lib64/libc.so.6
 #3  0x0000000002b441ac in ompi_coll_tuned_reduce_intra_basic_linear ()
 #4  0x0000000002b35db5 in ompi_coll_tuned_reduce_intra_dec_fixed ()
 #5  0x0000000002aed529 in mca_coll_sync_reduce ()
 #6  0x0000000002ae7473 in PMPI_Reduce ()
 #7  0x00000000017be25c in CarpetReduce::Finalise (cgh=0x1ee04bc0, proc=-2,
 num_outvals=80, outvals=0x1ee04bd0, outtype=389, myoutvals=0x0,
     mycounts=0x6f, red=0x17bfa73, $�4=<value optimized out>, $�5=<value
 optimized out>, $�6=<value optimized out>, $�7=<value optimized out>,
     $�8=<value optimized out>, $�9=<value optimized out>, $�0=<value
 optimized out>, $�1=<value optimized out>)
     at
 /panfs/ds06/sxs/rhaas/zwicky/cactus/ET_trunk/arrangements/Carpet/CarpetReduce/src/reduce.cc:962
 #8  0x00000000017bfa73 in CarpetReduce::ReduceGVs (cgh=0x1ee04bc0,
 proc=-2, num_outvals=80, outtype=518015952, outvals=0x185, num_invars=0,
     invars=0x1e536490, red=0x17c1aad, igrid=517840208, $�6=<value
 optimized out>, $�7=<value optimized out>, $�8=<value optimized out>,
     $�9=<value optimized out>, $�0=<value optimized out>, $�1=<value
 optimized out>, $�2=<value optimized out>, $�3=<value optimized out>,
     $�4=<value optimized out>) at
 /panfs/ds06/sxs/rhaas/zwicky/cactus/ET_trunk/arrangements/Carpet/CarpetReduce/src/reduce.cc:1577
 #9  0x00000000017c1aad in CarpetReduce::average_GVs (cgh=0x1ee04bc0,
 proc=-2, num_outvals=80, outtype=518015952, outvals=0x185, num_invars=0,
     invars=0x1edd9d50, $�8=<value optimized out>, $�9=<value optimized
 out>, $=<value optimized out>, $=<value optimized out>,
     $=<value optimized out>, $=<value optimized out>, $=<value optimized
 out>)
     at
 /panfs/ds06/sxs/rhaas/zwicky/cactus/ET_trunk/arrangements/Carpet/CarpetReduce/src/reduce.cc:1621
 #10 0x00000000007d97b8 in CCTK_Reduce (GH=0x1ee04bc0, proc=-2,
 operation_handle=80, num_out_vals=518015952, type_out_vals=389,
 out_vals=0x0,
     num_in_fields=1) at
 /panfs/ds06/sxs/rhaas/zwicky/cactus/ET_trunk/src/comm/Reduction.c:429
 #11 0x000000000077ec20 in CarpetIOScalar::OutputVarAs (cctkGH=0x1ee04bc0,
 varname=0xfffffffe <Address 0xfffffffe out of bounds>,
     alias=0x50 <Address 0x50 out of bounds>, out_reductions=0x1ee04bd0 "",
 $P1=<value optimized out>, $P2=<value optimized out>,
     $P3=<value optimized out>, $P4=<value optimized out>)
     at
 /panfs/ds06/sxs/rhaas/zwicky/cactus/ET_trunk/arrangements/Carpet/CarpetIOScalar/src/ioscalar.cc:465
 #12 0x000000000077dc7a in CarpetIOScalar::TriggerOutput
 (cctkGH=0x1ee04bc0, vindex=-2, $O9=<value optimized out>, $P0=<value
 optimized out>)
     at
 /panfs/ds06/sxs/rhaas/zwicky/cactus/ET_trunk/arrangements/Carpet/CarpetIOScalar/src/ioscalar.cc:717
 #13 0x00000000005ac4a6 in CCTKi_TriggerAction (GH=0x1ee04bc0, variable=-2)
     at /panfs/ds06/sxs/rhaas/zwicky/cactus/ET_trunk/src/IO/IOMethods.c:931
 #14 0x00000000005a8bcb in CCTKi_ScheduleCallExit (attribute=0x1ee04bc0,
 data=0xfffffffe)
     at
 /panfs/ds06/sxs/rhaas/zwicky/cactus/ET_trunk/src/main/ScheduleInterface.c:2780
 #15 0x00000000005ab838 in CCTKi_DoScheduleTraverse (group_name=0x1ee04bc0
 "", item_entry=0xfffffffe, item_exit=0x50, while_check=0x1ee04bd0,
     if_check=0x185, function_process=0, data=0x7fff55a60358) at
 /panfs/ds06/sxs/rhaas/zwicky/cactus/ET_trunk/src/schedule/ScheduleTraverse.c:158
 #16 0x00000000005a4869 in CCTK_ScheduleTraverse (where=0x1ee04bc0 "",
 GH=0xfffffffe, CallFunction=0x50)
     at
 /panfs/ds06/sxs/rhaas/zwicky/cactus/ET_trunk/src/main/ScheduleInterface.c:891
 #17 0x00000000017dad9d in Carpet::CallAnalysis (cctkGH=0x1ee04bc0,
 did_recover=254, $:5=<value optimized out>, $:6=<value optimized out>)
     at
 /panfs/ds06/sxs/rhaas/zwicky/cactus/ET_trunk/arrangements/Carpet/Carpet/src/Initialise.cc:615
 #18 0x00000000017de0d7 in Carpet::Initialise (fc=0x1ee04bc0, $;8=<value
 optimized out>)
     at
 /panfs/ds06/sxs/rhaas/zwicky/cactus/ET_trunk/arrangements/Carpet/Carpet/src/Initialise.cc:132
 #19 0x0000000000599b09 in main (argc=6, argv=0x7fff55a60978) at
 /panfs/ds06/sxs/rhaas/zwicky/cactus/ET_trunk/src/main/flesh.cc:80
 }}}

 Erik: the data and all is on zwicky where I think you can at least read
 all my files in case you want a more in-depth look at it. The whole set of
 files is in /panfs/ds06/sxs/rhaas/simulations/qc0-mclachlantrunk .

-- 
Ticket URL: <https://trac.einsteintoolkit.org/ticket/434#comment:25>
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