[ET Trac] [Einstein Toolkit] #1769: External libraries: moving towards multiarch library directory structure

[Einstein Toolkit]

#1769: External libraries: moving towards multiarch library directory structure
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  Reporter:  bmundim                |       Owner:                                  
      Type:  defect                 |      Status:  review                          
  Priority:  major                  |   Milestone:  ET_2015_05                      
 Component:  EinsteinToolkit thorn  |     Version:  development version             
Resolution:                         |    Keywords:  ExternalLibraries HDF5 Multiarch
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Comment (by bmundim):

 To be more precise where and how this failure is happening this is the
 standard output:

 {{{
 echo
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 ________________________________________________________________________
 echo Preprocessing /path/to/my/thorn/src/file.F90
 Preprocessing /path/to/my/thorn/src/file.F90
 { if test yes = 'yes'; then echo '#line 1
 "'/path/to/my/thorn/src/file.F90'"'; fi; cat
 /path/to/my/thorn/src/file.F90; } | perl -p -e
 's.//.CCTK_AUTOMATICALLY_GENERATED_CONCATENATION_PROTECTION.g' | cpp
 -traditional  -fopenmp -Wall -I"/usr/lib/openmpi/include"
 -I"/usr/lib/openmpi/include/openmpi" -I"/usr/lib/openmpi/include"
 -I"/usr/lib/openmpi/include/openmpi" -I"/usr/lib/x86_64-linux-gnu"
 -I"/usr/lib" -I"/path/to/my/thorn/src" -I"/path/to/my/thorn/src/include"
 -I"/home/bruno/tmp/ET_git_dev/Cactus/configs/thc/config-data"
 -I"/home/bruno/tmp/ET_git_dev/Cactus/configs/thc/bindings/include"
 -I"/home/bruno/tmp/ET_git_dev/Cactus/src/include"
 -I"/home/bruno/tmp/ET_git_dev/Cactus/arrangements"
 -I"/home/bruno/tmp/ET_git_dev/Cactus/configs/thc/bindings/Configuration/Thorns"
 -I"/home/bruno/tmp/ET_git_dev/Cactus/configs/thc/bindings/include/mythorn"
 -I"/usr/lib/openmpi/include" -I"/usr/lib/openmpi/include/openmpi"
 -I"/usr/lib/openmpi/include" -I"/usr/lib/openmpi/include/openmpi"
 -I"/usr/lib/x86_64-linux-gnu" -I"/usr/lib" -I"/path/to/my/thorn/src"
 -I"/path/to/my/thorn/src/include"
 -I"/home/bruno/tmp/ET_git_dev/Cactus/configs/thc/bindings/include/mythorn"
 -DFCODE -DF90CODE | perl -p -e
 's.CCTK_AUTOMATICALLY_GENERATED_CONCATENATION_PROTECTION.//.g' | perl -p
 -e 's/__FORTRANFILE__/\"file.F90\"/g' | perl -s
 /home/bruno/tmp/ET_git_dev/Cactus/lib/sbin/f_file_processor.pl
 -free_format -line_directives=yes
 -source_file_name=/path/to/my/thorn/src/file.F90 > file.f90
 echo Compiling /path/to/my/thorn/src/file.F90
 Compiling /path/to/my/thorn/src/file.F90
 if test "gfortran" = "none" ; then echo "There is no Fortran 90 compiler
 available.  Aborting." ; exit 1 ; fi ; current_wd=`pwd` ; cd
 /home/bruno/tmp/ET_git_dev/Cactus/configs/thc/scratch ; gfortran -g3
 -march=native -fcray-pointer -m128bit-long-double -ffixed-line-length-none
 -fno-range-check -O2 -ffast-math -fopenmp -Wall
 -I"/usr/lib/openmpi/include" -I"/usr/lib/openmpi/include/openmpi"
 -I"/usr/lib/openmpi/include" -I"/usr/lib/openmpi/include/openmpi"
 -I"/usr/lib/x86_64-linux-gnu" -I"/usr/lib" -I"/path/to/my/thorn/src"
 -I"/path/to/my/thorn/src/include"
 -I"/home/bruno/tmp/ET_git_dev/Cactus/configs/thc/config-data"
 -I"/home/bruno/tmp/ET_git_dev/Cactus/configs/thc/bindings/include"
 -I"/home/bruno/tmp/ET_git_dev/Cactus/src/include"
 -I"/home/bruno/tmp/ET_git_dev/Cactus/arrangements"
 -I"/home/bruno/tmp/ET_git_dev/Cactus/configs/thc/bindings/Configuration/Thorns"
 -I"/home/bruno/tmp/ET_git_dev/Cactus/configs/thc/bindings/include/mythorn"
 -I"/usr/lib/openmpi/include" -I"/usr/lib/openmpi/include/openmpi"
 -I"/usr/lib/openmpi/include" -I"/usr/lib/openmpi/include/openmpi"
 -I"/usr/lib/x86_64-linux-gnu" -I"/usr/lib" -I"/path/to/my/thorn/src"
 -I"/path/to/my/thorn/src/include"
 -I"/home/bruno/tmp/ET_git_dev/Cactus/configs/thc/bindings/include/mythorn"
 -c -o $current_wd/file.F90.o $current_wd/file.f90
 Warning: Nonexistent include directory "/path/to/my/thorn/src/include"
 Warning: Nonexistent include directory "/path/to/my/thorn/src/include"
 /path/to/my/thorn/src/file.F90:2.6:

   use hdf5
       1
 Fatal Error: Can't open module file 'hdf5.mod' for reading at (1): No such
 file or directory
 }}}

 If I add -I"/usr/include" immediately before "-c -o $current_wd/file.F90.o
 $current_wd/file.f90" then the compilation succeeds. Can we at least add
 this path explicitly and maybe the "/usr/local/include" for this release?

-- 
Ticket URL: <https://trac.einsteintoolkit.org/ticket/1769#comment:7>
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