[ET Trac] [Einstein Toolkit] #2204: Compilation on comet failed to due out of memory
Einstein Toolkit
trac-noreply at einsteintoolkit.org
Sun Oct 7 20:49:28 CDT 2018
#2204: Compilation on comet failed to due out of memory
---------------------------------+------------------------
Reporter: Roland Haas | Type: defect
Status: new | Priority: minor
Milestone: | Component: SimFactory
Version: development version | Keywords: comet
---------------------------------+------------------------
Compiling on Comet's login node failed for me when compiling
{{{
arrangements/Carpet/CarpetLib/src/restrict_3d_cc_o5_rf2.cc
}}}
due to an out of memory error. ulimit -a indicates that there is a limit
of 4GB per user
{{{
rhaas at comet-ln2:~$ ulimit -a
core file size (blocks, -c) 0
data seg size (kbytes, -d) unlimited
scheduling priority (-e) 0
file size (blocks, -f) unlimited
pending signals (-i) 257194
max locked memory (kbytes, -l) 524288
max memory size (kbytes, -m) 4194304
open files (-n) 1024
pipe size (512 bytes, -p) 8
POSIX message queues (bytes, -q) 819200
real-time priority (-r) 0
stack size (kbytes, -s) unlimited
cpu time (seconds, -t) 10800
max user processes (-u) 1024
virtual memory (kbytes, -v) 4194304
file locks (-x) unlimited
}}}
which can be avoided by going to a compute node
{{{
srun --partition=debug --pty --nodes=1 --ntasks-per-node=24 -t 00:30:00
--wait=0 --export=ALL /bin/bash
}}}
and compiling via
{{{
simfactory/bin/sim build --machine comet
}}}
This is (hopefully) a temporary measure on comet.
--
Ticket URL: <https://trac.einsteintoolkit.org/ticket/2204>
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