From trac-noreply at einsteintoolkit.org Tue Dec 3 18:45:51 2024 From: trac-noreply at einsteintoolkit.org (Maxwell Rizzo) Date: Wed, 04 Dec 2024 00:45:51 +0000 Subject: [ET Trac] #2176: Test "Binary neutron star" example Message-ID: #2176: Test "Binary neutron star" example Reporter: Roland Haas Status: open Milestone: ET_2024_11 Version: development version Type: task Priority: major Component: EinsteinToolkit website Comment (by Maxwell Rizzo): Pull request is created for the Annie Jump Cannon Release, test ran on 11/24/2024 on Frontera. No differences found comparing to the previous run. Anvil was functioning at around 1/70th the speed of Frontera for this simulation. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2176/test-binary-neutron-star-example -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Thu Dec 5 09:50:48 2024 From: trac-noreply at einsteintoolkit.org (Roland Haas) Date: Thu, 05 Dec 2024 15:50:48 +0000 Subject: [ET Trac] #2645: Major update to Baikal/BaikalVacuum Message-ID: #2645: Major update to Baikal/BaikalVacuum Reporter: Zach Etienne Status: resolved Milestone: Version: Type: enhancement Priority: major Component: Changes (by Roland Haas): status: resolved (was new) -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2645/major-update-to-baikal-baikalvacuum -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Thu Dec 5 09:51:57 2024 From: trac-noreply at einsteintoolkit.org (Roland Haas) Date: Thu, 05 Dec 2024 15:51:57 +0000 Subject: [ET Trac] #2645: Major update to Baikal/BaikalVacuum Message-ID: #2645: Major update to Baikal/BaikalVacuum Reporter: Zach Etienne Status: resolved Milestone: Version: Type: enhancement Priority: major Component: Comment (by Roland Haas): Reported as applied during the call today. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2645/major-update-to-baikal-baikalvacuum -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Fri Dec 6 07:39:36 2024 From: trac-noreply at einsteintoolkit.org (Roland Haas) Date: Fri, 06 Dec 2024 13:39:36 +0000 Subject: [ET Trac] #2835: add backtrace functionality from CarpetLib Message-ID: #2835: add backtrace functionality from CarpetLib Reporter: Roland Haas Status: new Milestone: Version: development version Type: enhancement Priority: major Component: EinsteinToolkit thorn CarpteLib contained code to output a backtrace independent of say the MPI stack used. Pull request [https://github.com/EinsteinToolkit/CarpetX/pull/323](https://github.com/EinsteinToolkit/CarpetX/pull/323) copies the same functionality to CarpetX -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2835/add-backtrace-functionality-from-carpetlib -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Fri Dec 6 07:39:58 2024 From: trac-noreply at einsteintoolkit.org (Roland Haas) Date: Fri, 06 Dec 2024 13:39:58 +0000 Subject: [ET Trac] #2835: add backtrace functionality from CarpetLib Message-ID: #2835: add backtrace functionality from CarpetLib Reporter: Roland Haas Status: new Milestone: Version: development version Type: enhancement Priority: major Component: EinsteinToolkit thorn Comment (by Roland Haas): Please review. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2835/add-backtrace-functionality-from-carpetlib -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Fri Dec 6 07:40:11 2024 From: trac-noreply at einsteintoolkit.org (Roland Haas) Date: Fri, 06 Dec 2024 13:40:11 +0000 Subject: [ET Trac] #2835: add backtrace functionality from CarpetLib Message-ID: #2835: add backtrace functionality from CarpetLib Reporter: Roland Haas Status: new Milestone: Version: development version Type: enhancement Priority: major Component: EinsteinToolkit thorn Changes (by Roland Haas): responsible: [] (was ) assignee: Roland Haas (was ) -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2835/add-backtrace-functionality-from-carpetlib -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Fri Dec 6 07:42:50 2024 From: trac-noreply at einsteintoolkit.org (Roland Haas) Date: Fri, 06 Dec 2024 13:42:50 +0000 Subject: [ET Trac] #2835: add backtrace functionality from CarpetLib Message-ID: #2835: add backtrace functionality from CarpetLib Reporter: Roland Haas Status: new Milestone: Version: development version Type: enhancement Priority: major Component: EinsteinToolkit thorn Comment (by Roland Haas): Sample output ```text ekohaes8: .../CarpetX/test$ cat backtrace/backtrace.0.txt Backtrace from rank 0 pid 1251337: 1. CarpetX::signal_handler(int) [../../../../exe/cactus_sim(_ZN7CarpetX14signal_handlerEi+0xcd) [0x5599097ec7bd]] 2. /lib/x86_64-linux-gnu/libc.so.6(+0x3fce0) [0x7f2d96649ce0] 3. /lib/x86_64-linux-gnu/libc.so.6(kill+0x7) [0x7f2d96649ef7] 4. ../../../../exe/cactus_sim(CarpetX_BacktraceTest+0x34) [0x5599097ebda4] 5. ../../../../exe/cactus_sim(CCTK_CallFunction+0xd5) [0x55990b4a26b5] 6. ../../../../exe/cactus_sim(+0x198f996) [0x55990a072996] 7. ../../../../exe/cactus_sim(+0x19a8720) [0x55990a08b720] 8. /lib/x86_64-linux-gnu/libgomp.so.1(GOMP_parallel+0x46) [0x7f2d96f22866] 9. CarpetX::task_manager::run_tasks() [../../../../exe/cactus_sim(_ZN7CarpetX12task_manager9run_tasksEv+0x39) [0x55990a08b849]] 10. CarpetX::active_levels_t::loop_parallel(std::function const&) const [../../../../exe/cactus_sim(_ZNK7CarpetX15active_levels_t13loop_parallelERKSt8functionIFviiiiPK4_cGHEE+0x79) [0x55990a0787d9]] 11. CarpetX::CallFunction(void*, _cFunctionData*, void*) [../../../../exe/cactus_sim(_ZN7CarpetX12CallFunctionEPvP14_cFunctionDataS0_+0x882) [0x55990a081332]] 12. ../../../../exe/cactus_sim(+0x2dbfb92) [0x55990b4a2b92] 13. ../../../../exe/cactus_sim(+0x2dc65ad) [0x55990b4a95ad] 14. ../../../../exe/cactus_sim(CCTKi_DoScheduleTraverse+0x6b) [0x55990b4a976b] 15. ../../../../exe/cactus_sim(+0x2dbf911) [0x55990b4a2911] 16. ../../../../exe/cactus_sim(CCTK_ScheduleTraverse+0xd2) [0x55990b4a47a2] 17. CarpetX::ScheduleTraverseGH(_cGH*, char const*) [../../../../exe/cactus_sim(_ZN7CarpetX18ScheduleTraverseGHEP4_cGHPKc+0x28) [0x559909e55b58]] 18. ../../../../exe/cactus_sim(CCTKi_ScheduleTraverseGHExtensions+0x3c) [0x55990b497f3c] 19. CarpetX::Initialise(tFleshConfig*) [../../../../exe/cactus_sim(_ZN7CarpetX10InitialiseEP12tFleshConfig+0x904) [0x55990a0831a4]] 20. ../../../../exe/cactus_sim(main+0x35) [0x559908fd96b5] 21. /lib/x86_64-linux-gnu/libc.so.6(+0x29d68) [0x7f2d96633d68] 22. /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85) [0x7f2d96633e25] 23. ../../../../exe/cactus_sim(_start+0x21) [0x559909159b91] The hexadecimal addresses in this backtrace can also be interpreted with a debugger (e.g. gdb), or with the 'addr2line' (or 'gaddr2line') command line tool: 'addr2line -e cactus_sim
'. ``` ? -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2835/add-backtrace-functionality-from-carpetlib -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Fri Dec 6 08:35:52 2024 From: trac-noreply at einsteintoolkit.org (Roland Haas) Date: Fri, 06 Dec 2024 14:35:52 +0000 Subject: [ET Trac] #2836: add support for different data types to GPU arrays Message-ID: #2836: add support for different data types to GPU arrays Reporter: Roland Haas Status: new Milestone: Version: Type: enhancement Priority: major Component: EinsteinToolkit thorn This adds proper support for data types other than `double` to CarpetX, also for GPUs. It introduces a helper class `AnyVector`that can hold any data type \(similar to `gdata` in CarpetLib\), as well as a number of switch statements to handle openPMD's typed output routines.? I am told that very new versions of openPMD-api lets one call the internal un-typed output routine, but at the time this code was written, that was not yet possible, and thus may not be possible on all cluster installed copies of openPMD. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2836/add-support-for-different-data-types-to -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Fri Dec 6 08:36:05 2024 From: trac-noreply at einsteintoolkit.org (Roland Haas) Date: Fri, 06 Dec 2024 14:36:05 +0000 Subject: [ET Trac] #2836: add support for different data types to GPU arrays Message-ID: #2836: add support for different data types to GPU arrays Reporter: Roland Haas Status: new Milestone: Version: Type: enhancement Priority: major Component: EinsteinToolkit thorn Comment (by Roland Haas): Pull request is here: [https://github.com/EinsteinToolkit/CarpetX/pull/324](https://github.com/EinsteinToolkit/CarpetX/pull/324) -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2836/add-support-for-different-data-types-to -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Fri Dec 6 08:36:59 2024 From: trac-noreply at einsteintoolkit.org (Roland Haas) Date: Fri, 06 Dec 2024 14:36:59 +0000 Subject: [ET Trac] #2836: add support for different data types to GPU arrays Message-ID: #2836: add support for different data types to GPU arrays Reporter: Roland Haas Status: new Milestone: Version: Type: enhancement Priority: major Component: EinsteinToolkit thorn Comment (by Roland Haas): Please review. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2836/add-support-for-different-data-types-to -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Thu Dec 12 08:49:02 2024 From: trac-noreply at einsteintoolkit.org (Roland Haas) Date: Thu, 12 Dec 2024 14:49:02 +0000 Subject: [ET Trac] #2176: Test "Binary neutron star" example Message-ID: #2176: Test "Binary neutron star" example Reporter: Roland Haas Status: resolved Milestone: ET_2024_11 Version: development version Type: task Priority: major Component: EinsteinToolkit website Changes (by Roland Haas): status: resolved (was open) -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2176/test-binary-neutron-star-example -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Thu Dec 12 08:59:38 2024 From: trac-noreply at einsteintoolkit.org (Roland Haas) Date: Thu, 12 Dec 2024 14:59:38 +0000 Subject: [ET Trac] #2807: Hydro_RNSID passes CFLAGS to LD Message-ID: #2807: Hydro_RNSID passes CFLAGS to LD Reporter: Roland Haas Status: new Milestone: Version: Type: bug Priority: minor Component: EinsteinToolkit thorn Comment (by Roland Haas): Unless objected I will apply this after 2024-12-26 -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2807/hydro_rnsid-passes-cflags-to-ld -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Thu Dec 12 09:00:03 2024 From: trac-noreply at einsteintoolkit.org (Roland Haas) Date: Thu, 12 Dec 2024 15:00:03 +0000 Subject: [ET Trac] #1566: Update Cactus autoconf Message-ID: #1566: Update Cactus autoconf Reporter: Erik Schnetter Status: new Milestone: Version: development version Type: enhancement Priority: major Component: Cactus Comment (by Roland Haas): Unless objected I will apply this after 2024-12-26 -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/1566/update-cactus-autoconf -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Thu Dec 12 09:01:38 2024 From: trac-noreply at einsteintoolkit.org (Roland Haas) Date: Thu, 12 Dec 2024 15:01:38 +0000 Subject: [ET Trac] #2823: Include TOVola: An enhanced TOV solver with Tabulated EOS support Message-ID: #2823: Include TOVola: An enhanced TOV solver with Tabulated EOS support Reporter: David Boyer Status: open Milestone: ET_2024_11 Version: Type: enhancement Priority: major Component: EinsteinToolkit thorn Comment (by Roland Haas): TOVola has been included in the ET\_2024\_11 \(Cannon\) release. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2823/include-tovola-an-enhanced-tov-solver-with -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Thu Dec 12 09:01:54 2024 From: trac-noreply at einsteintoolkit.org (Roland Haas) Date: Thu, 12 Dec 2024 15:01:54 +0000 Subject: [ET Trac] #2823: Include TOVola: An enhanced TOV solver with Tabulated EOS support Message-ID: #2823: Include TOVola: An enhanced TOV solver with Tabulated EOS support Reporter: David Boyer Status: resolved Milestone: ET_2024_11 Version: Type: enhancement Priority: major Component: EinsteinToolkit thorn Changes (by Roland Haas): status: resolved (was open) -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2823/include-tovola-an-enhanced-tov-solver-with -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Mon Dec 16 07:43:56 2024 From: trac-noreply at einsteintoolkit.org (Suo-Ning Wang) Date: Mon, 16 Dec 2024 13:43:56 +0000 Subject: [ET Trac] #2837: Building the Einstein Toolkit Message-ID: #2837: Building the Einstein Toolkit Reporter: Suo-Ning Wang Status: submitted Milestone: Version: Type: bug Priority: major Component: When I am building the Einstein Toolkit, I find some bug which I cannot solve. `./simfactory/bin/sim build -j2 --thornlist thornlists/einsteintoolkit.th` I want to know what went wrong. ![](https://bitbucket.org/repo/8zBLME5/images/709390997-c10063cf-bf10-4b91-beae-14602e5f2850.png) ![](https://bitbucket.org/repo/8zBLME5/images/3831281540-21b902a3-abf7-44a8-9249-52618111b4d1.png) ? -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2837/building-the-einstein-toolkit -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Mon Dec 16 08:53:16 2024 From: trac-noreply at einsteintoolkit.org (Roland Haas) Date: Mon, 16 Dec 2024 14:53:16 +0000 Subject: [ET Trac] #2837: Building the Einstein Toolkit Message-ID: #2837: Building the Einstein Toolkit Reporter: Suo-Ning Wang Status: open Milestone: Version: Type: bug Priority: major Component: Changes (by Roland Haas): status: open (was submitted) -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2837/building-the-einstein-toolkit -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Mon Dec 16 08:55:17 2024 From: trac-noreply at einsteintoolkit.org (Roland Haas) Date: Mon, 16 Dec 2024 14:55:17 +0000 Subject: [ET Trac] #2837: Building the Einstein Toolkit Message-ID: #2837: Building the Einstein Toolkit Reporter: Suo-Ning Wang Status: open Milestone: Version: Type: bug Priority: major Component: Comment (by Roland Haas): Hello Suo-Ning Wang, that looks likes something went wrong in ADIOS2?s compilation and configuration stage. I have unfortunately not seen that specific error before. Could you take a look at [http://einsteintoolkit.org/support.html#general-guidelines-for-questions](http://einsteintoolkit.org/support.html#general-guidelines-for-questions) follow the steps there and attach the file `make.log` produced there? ? -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2837/building-the-einstein-toolkit -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Mon Dec 16 13:54:01 2024 From: trac-noreply at einsteintoolkit.org (Roland Haas) Date: Mon, 16 Dec 2024 19:54:01 +0000 Subject: [ET Trac] #2414: include con2prim framework by Siegel, Moesta et al. into ET Message-ID: #2414: include con2prim framework by Siegel, Moesta et al. into ET Reporter: Roland Haas Status: on hold Milestone: Version: Type: proposal Priority: major Component: EinsteinToolkit thorn Comment (by Roland Haas): @{557058:4b0c8315-696b-4d2e-92da-2da5fea9e8d4} @{5b5a53bbe288ee2d9b4ba957} @{557058:8bc23f2a-45c0-477d-8ac4-a5a16c734278} are any of these efforts still ?alive? or have matured to the point where they could be made public? -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2414/include-con2prim-framework-by-siegel -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Mon Dec 16 23:24:59 2024 From: trac-noreply at einsteintoolkit.org (Suo-Ning Wang) Date: Tue, 17 Dec 2024 05:24:59 +0000 Subject: [ET Trac] #2837: Building the Einstein Toolkit Message-ID: #2837: Building the Einstein Toolkit Reporter: Suo-Ning Wang Status: open Milestone: Version: Type: bug Priority: major Component: Comment (by Suo-Ning Wang): I use linux system on Ubuntu. I found my problem, and one file could not be updated. ![](https://bitbucket.org/repo/8zBLME5/images/274521210-95c2fbb4-f104-4b7f-93bc-27a67bb504b6.png) ? -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2837/building-the-einstein-toolkit -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Tue Dec 17 02:32:21 2024 From: trac-noreply at einsteintoolkit.org (Suo-Ning Wang) Date: Tue, 17 Dec 2024 08:32:21 +0000 Subject: [ET Trac] #2837: Building the Einstein Toolkit Message-ID: #2837: Building the Einstein Toolkit Reporter: Suo-Ning Wang Status: open Milestone: Version: Type: bug Priority: major Component: Comment (by Suo-Ning Wang): Using configuration: sim Building sim if test ! -f "/labshare/users\_team/suoning/?????/Cactus/configs/sim/config-data/cctk\_Config.h" ; then \\ echo \_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_;\\ echo "Cactus - version: 4.17.0";\\ if test "x"yes"" = 'xno'; then\\ if \(! perl -s lib/make/setup\_configuration.pl sim\) ; then \\ echo "" ; \\ echo "Error reconfiguring configuration sim" ; \\ rm -f "/labshare/users\_team/suoning/?????/Cactus/configs/sim/config-data/cctk\_Config.h" ; \\ exit 2 ; \\ fi \\ else \\ echo "Error: Configuration sim is incomplete.";\\ echo "Please check the files in /labshare/users\_team/suoning/?????/Cactus/configs/sim/config-data for error messages.";\\ echo "You can try again to configure using make sim-config";\\ echo "or delete this configuration with make sim-delete.";\\ echo \_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_;\\ exit 1; \\ fi \\ fi if \(perl -e 'exit \(\(stat shift\)\[9\] > \(stat shift\)\[9\]\)' /labshare/users\_team/suoning/?????/Cactus/configs/sim/config-info /labshare/users\_team/suoning/?????/Cactus/lib/make/force-reconfigure\); then \\ echo \_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_;\\ echo "Cactus - version: 4.17.0";\\ echo "Error: Configuration sim is out of date.";\\ echo " Please reconfigure your configuration by running the command"; \\ echo ;\\ echo " make sim-reconfig"; \\ echo ;\\ echo " \(It is likely that recent changes to the flesh require this.\)";\\ echo \_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_;\\ exit 1;\\ fi if test "x0" = "x0" ; then \\ echo \_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_;\\ echo "Cactus - version: 4.17.0"; \\ echo "Building configuration sim"; \\ echo \_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_;\\ fi --- Cactus - version: 4.17.0 Building configuration sim --- make -f /labshare/users\_team/suoning/?????/Cactus/lib/make/make.configuration TOP=/labshare/users\_team/suoning/?????/Cactus/configs/sim CCTK\_HOME=/labshare/users\_team/suoning/?????/Cactus rebuild make\[1\]: ?????/labshare/users\_team/suoning/?????/Cactus? make\[1\]: ??rebuild???????? make\[1\]: ?????/labshare/users\_team/suoning/?????/Cactus? make -f /labshare/users\_team/suoning/?????/Cactus/lib/make/make.configuration TOP=/labshare/users\_team/suoning/?????/Cactus/configs/sim CCTK\_HOME=/labshare/users\_team/suoning/?????/Cactus make\[1\]: ?????/labshare/users\_team/suoning/?????/Cactus? Checking status of thorn zlib --- make\[2\]: ?????/labshare/users\_team/suoning/?????/Cactus/configs/sim/build/zlib? if \[ ! -d ./ \] ; then mkdir -p ./ ; fi cd ./ ; make CCTK\_TARGET=make.checked TOP=/labshare/users\_team/suoning/?????/Cactus/configs/sim CONFIG=/labshare/users\_team/suoning/?????/Cactus/configs/sim/config-data SRCDIR=/labshare/users\_team/suoning/?????/Cactus/arrangements/ExternalLibraries/zlib/src THORN=zlib USESTHORNS="" -f /labshare/users\_team/suoning/?????/Cactus/lib/make/make.subdir make\[3\]: ?????/labshare/users\_team/suoning/?????/Cactus/configs/sim/build/zlib? make\[3\]: ?make.checked?????? make\[3\]: ?????/labshare/users\_team/suoning/?????/Cactus/configs/sim/build/zlib? cd cctk\_Bindings; make CCTK\_TARGET=make.checked TOP=/labshare/users\_team/suoning/?????/Cactus/configs/sim CONFIG=/labshare/users\_team/suoning/?????/Cactus/configs/sim/config-data SRCDIR=/labshare/users\_team/suoning/?????/Cactus/configs/sim/bindings/build/zlib THORN=zlib USESTHORNS="" -f /labshare/users\_team/suoning/?????/Cactus/lib/make/make.subdir make\[3\]: ?????/labshare/users\_team/suoning/?????/Cactus/configs/sim/build/zlib/cctk\_Bindings? make\[3\]: ?make.checked?????? make\[3\]: ?????/labshare/users\_team/suoning/?????/Cactus/configs/sim/build/zlib/cctk\_Bindings? make\[2\]: ?????/labshare/users\_team/suoning/?????/Cactus/configs/sim/build/zlib? echo \_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_ --- Checking status of thorn hwloc --- make\[2\]: ?????/labshare/users\_team/suoning/?????/Cactus/configs/sim/build/hwloc? if \[ ! -d ./ \] ; then mkdir -p ./ ; fi echo CCTK\_THIS\_SUBDIR := ./ > make.identity if \[ ! -d cctk\_Bindings/ \] ; then mkdir -p cctk\_Bindings/ ; fi echo CCTK\_THIS\_SUBDIR := cctk\_Bindings/ > cctk\_Bindings/make.identity if \[ ! -d ./ \] ; then mkdir -p ./ ; fi cd ./ ; make CCTK\_TARGET=make.checked TOP=/labshare/users\_team/suoning/?????/Cactus/configs/sim CONFIG=/labshare/users\_team/suoning/?????/Cactus/configs/sim/config-data SRCDIR=/labshare/users\_team/suoning/?????/Cactus/arrangements/ExternalLibraries/hwloc/src THORN=hwloc USESTHORNS="zlib" -f /labshare/users\_team/suoning/?????/Cactus/lib/make/make.subdir make\[3\]: ?????/labshare/users\_team/suoning/?????/Cactus/configs/sim/build/hwloc? gcc -E -M -fopenmp -Wall -g -std=gnu99 -O2 -fopenmp -Wall -DHWLOC\_UTILPATH='/labshare/users\_team/suoning/?????/Cactus/exe/sim' -DHWLOC\_VERSION\_PKGCONFIG='"2.10.0"' /labshare/users\_team/suoning/?????/Cactus/arrangements/ExternalLibraries/hwloc/src/version.c -I"/usr/include/libxml2" -I"-DWITH\_GZFILEOP" -I"-DLZMA\_API\_STATIC" -I"/labshare/users\_team/suoning/?????/Cactus/arrangements/ExternalLibraries/hwloc/src" -I"/labshare/users\_team/suoning/?????/Cactus/configs/sim/config-data" -I"/labshare/users\_team/suoning/?????/Cactus/configs/sim/bindings/include" -I"/labshare/users\_team/suoning/?????/Cactus/src/include" -I"/labshare/users\_team/suoning/?????/Cactus/arrangements" -I"/labshare/users\_team/suoning/?????/Cactus/configs/sim/bindings/Configuration/Thorns" -I"/labshare/users\_team/suoning/?????/Cactus/configs/sim/bindings/include/hwloc" -I"/usr/include/libxml2" -I"-DWITH\_GZFILEOP" -I"-DLZMA\_API\_STATIC" -I"/labshare/users\_team/suoning/?????/Cactus/arrangements/ExternalLibraries/hwloc/src" -I"/labshare/users\_team/suoning/?????/Cactus/configs/sim/bindings/include/hwloc" -DCCODE > version.c.d perl -pi -e 's\{^\\s\*\\Qversion.o\\E\\s\*:\}\{version.c.o version.c.d:\}; s\{\\s\+\\S\*[/\\\\](CParameterStructNames%5C.h)\\b\}\{\}g' version.c.d 1734423130\.93969 Preprocessing /labshare/users\_team/suoning/?????/Cactus/arrangements/ExternalLibraries/hwloc/src/version.c \{ if test no = 'yes'; then echo '#line 1 "'/labshare/users\_team/suoning/?????/Cactus/arrangements/ExternalLibraries/hwloc/src/version.c'"'; fi; cat /labshare/users\_team/suoning/?????/Cactus/arrangements/ExternalLibraries/hwloc/src/version.c; \} | perl -s /labshare/users\_team/suoning/?????/Cactus/lib/sbin/c\_file\_processor.pl -line\_directives=no -source\_file\_name=/labshare/users\_team/suoning/?????/Cactus/arrangements/ExternalLibraries/hwloc/src/version.c /labshare/users\_team/suoning/?????/Cactus/configs/sim/config-data > version.c 1734423130\.98201 Compiling /labshare/users\_team/suoning/?????/Cactus/arrangements/ExternalLibraries/hwloc/src/version.c current\_wd=`pwd` ; cd /labshare/users\_team/suoning/?????/Cactus/configs/sim/scratch ; gcc -fopenmp -Wall -g -std=gnu99 -O2 -fopenmp -Wall -DHWLOC\_UTILPATH='/labshare/users\_team/suoning/?????/Cactus/exe/sim' -DHWLOC\_VERSION\_PKGCONFIG='"2.10.0"' -c -o $current\_wd/version.c.o $current\_wd/version.c -I"/usr/include/libxml2" -I"-DWITH\_GZFILEOP" -I"-DLZMA\_API\_STATIC" -I"/labshare/users\_team/suoning/?????/Cactus/arrangements/ExternalLibraries/hwloc/src" -I"/labshare/users\_team/suoning/?????/Cactus/configs/sim/config-data" -I"/labshare/users\_team/suoning/?????/Cactus/configs/sim/bindings/include" -I"/labshare/users\_team/suoning/?????/Cactus/src/include" -I"/labshare/users\_team/suoning/?????/Cactus/arrangements" -I"/labshare/users\_team/suoning/?????/Cactus/configs/sim/bindings/Configuration/Thorns" -I"/labshare/users\_team/suoning/?????/Cactus/configs/sim/bindings/include/hwloc" -I"/usr/include/libxml2" -I"-DWITH\_GZFILEOP" -I"-DLZMA\_API\_STATIC" -I"/labshare/users\_team/suoning/?????/Cactus/arrangements/ExternalLibraries/hwloc/src" -I"/labshare/users\_team/suoning/?????/Cactus/configs/sim/bindings/include/hwloc" -DCCODE 1734423131\.14617 Postprocessing /labshare/users\_team/suoning/?????/Cactus/arrangements/ExternalLibraries/hwloc/src/version.c --- echo "" > make.checked make\[3\]: ?????/labshare/users\_team/suoning/?????/Cactus/configs/sim/build/hwloc? cd cctk\_Bindings; make CCTK\_TARGET=make.checked TOP=/labshare/users\_team/suoning/?????/Cactus/configs/sim CONFIG=/labshare/users\_team/suoning/?????/Cactus/configs/sim/config-data SRCDIR=/labshare/users\_team/suoning/?????/Cactus/configs/sim/bindings/build/hwloc THORN=hwloc USESTHORNS="zlib" -f /labshare/users\_team/suoning/?????/Cactus/lib/make/make.subdir make\[3\]: ?????/labshare/users\_team/suoning/?????/Cactus/configs/sim/build/hwloc/cctk\_Bindings? gcc -E -M -fopenmp -Wall -g -std=gnu99 -O2 -fopenmp -Wall /labshare/users\_team/suoning/?????/Cactus/configs/sim/bindings/build/hwloc/cctk\_ThornBindings.c -I"/usr/include/libxml2" -I"-DWITH\_GZFILEOP" -I"-DLZMA\_API\_STATIC" -I"/labshare/users\_team/suoning/?????/Cactus/arrangements/ExternalLibraries/hwloc/src" -I"/labshare/users\_team/suoning/?????/Cactus/configs/sim/config-data" -I"/labshare/users\_team/suoning/?????/Cactus/configs/sim/bindings/include" -I"/labshare/users\_team/suoning/?????/Cactus/src/include" -I"/labshare/users\_team/suoning/?????/Cactus/arrangements" -I"/labshare/users\_team/suoning/?????/Cactus/configs/sim/bindings/Configuration/Thorns" -I"/labshare/users\_team/suoning/?????/Cactus/configs/sim/bindings/include/hwloc" -I"/usr/include/libxml2" -I"-DWITH\_GZFILEOP" -I"-DLZMA\_API\_STATIC" -I"/labshare/users\_team/suoning/?????/Cactus/configs/sim/bindings/build/hwloc" -I"/labshare/users\_team/suoning/?????/Cactus/configs/sim/bindings/include/hwloc" -DCCODE > cctk\_ThornBindings.c.d perl -pi -e 's\{^\\s\*\\Qcctk\_ThornBindings.o\\E\\s\*:\}\{cctk\_ThornBindings.c.o cctk\_ThornBindings.c.d:\}; s\{\\s\+\\S\*[/\\\\](CParameterStructNames%5C.h)\\b\}\{\}g' cctk\_ThornBindings.c.d 1734423131\.36676 Preprocessing /labshare/users\_team/suoning/?????/Cactus/configs/sim/bindings/build/hwloc/cctk\_ThornBindings.c \{ if test no = 'yes'; then echo '#line 1 "'/labshare/users\_team/suoning/?????/Cactus/configs/sim/bindings/build/hwloc/cctk\_ThornBindings.c'"'; fi; cat /labshare/users\_team/suoning/?????/Cactus/configs/sim/bindings/build/hwloc/cctk\_ThornBindings.c; \} | perl -s /labshare/users\_team/suoning/?????/Cactus/lib/sbin/c\_file\_processor.pl -line\_directives=no -source\_file\_name=/labshare/users\_team/suoning/?????/Cactus/configs/sim/bindings/build/hwloc/cctk\_ThornBindings.c /labshare/users\_team/suoning/?????/Cactus/configs/sim/config-data > cctk\_ThornBindings.c 1734423131\.3964 Compiling /labshare/users\_team/suoning/?????/Cactus/configs/sim/bindings/build/hwloc/cctk\_ThornBindings.c current\_wd=`pwd` ; cd /labshare/users\_team/suoning/?????/Cactus/configs/sim/scratch ; gcc -fopenmp -Wall -g -std=gnu99 -O2 -fopenmp -Wall -c -o $current\_wd/cctk\_ThornBindings.c.o $current\_wd/cctk\_ThornBindings.c -I"/usr/include/libxml2" -I"-DWITH\_GZFILEOP" -I"-DLZMA\_API\_STATIC" -I"/labshare/users\_team/suoning/?????/Cactus/arrangements/ExternalLibraries/hwloc/src" -I"/labshare/users\_team/suoning/?????/Cactus/configs/sim/config-data" -I"/labshare/users\_team/suoning/?????/Cactus/configs/sim/bindings/include" -I"/labshare/users\_team/suoning/?????/Cactus/src/include" -I"/labshare/users\_team/suoning/?????/Cactus/arrangements" -I"/labshare/users\_team/suoning/?????/Cactus/configs/sim/bindings/Configuration/Thorns" -I"/labshare/users\_team/suoning/?????/Cactus/configs/sim/bindings/include/hwloc" -I"/usr/include/libxml2" -I"-DWITH\_GZFILEOP" -I"-DLZMA\_API\_STATIC" -I"/labshare/users\_team/suoning/?????/Cactus/configs/sim/bindings/build/hwloc" -I"/labshare/users\_team/suoning/?????/Cactus/configs/sim/bindings/include/hwloc" -DCCODE 1734423131\.49924 Postprocessing /labshare/users\_team/suoning/?????/Cactus/configs/sim/bindings/build/hwloc/cctk\_ThornBindings.c --- echo "" > make.checked make\[3\]: ?????/labshare/users\_team/suoning/?????/Cactus/configs/sim/build/hwloc/cctk\_Bindings? if \[ -r /labshare/users\_team/suoning/?????/Cactus/configs/sim/lib/libthorn\_hwloc.a \] ; then echo Updating /labshare/users\_team/suoning/?????/Cactus/configs/sim/lib/libthorn\_hwloc.a ; else echo Creating /labshare/users\_team/suoning/?????/Cactus/configs/sim/lib/libthorn\_hwloc.a ; fi Creating /labshare/users\_team/suoning/?????/Cactus/configs/sim/lib/libthorn\_hwloc.a rm -f /labshare/users\_team/suoning/?????/Cactus/configs/sim/lib/libthorn\_hwloc.a make -f /labshare/users\_team/suoning/?????/Cactus/lib/make/make.thornlib /labshare/users\_team/suoning/?????/Cactus/configs/sim/lib/libthorn\_hwloc.a.objectlist make\[3\]: ?????/labshare/users\_team/suoning/?????/Cactus/configs/sim/build/hwloc? echo .[//version.c.o](//version.c.o) cctk\_Bindings//cctk\_ThornBindings.c.o > /labshare/users\_team/suoning/?????/Cactus/configs/sim/lib/libthorn\_hwloc.a.objectlist make\[3\]: ?????/labshare/users\_team/suoning/?????/Cactus/configs/sim/build/hwloc? xargs -n 10000 ar rcs /labshare/users\_team/suoning/?????/Cactus/configs/sim/lib/libthorn\_hwloc.a < /labshare/users\_team/suoning/?????/Cactus/configs/sim/lib/libthorn\_hwloc.a.objectlist if test "xno" = "xyes" ; then ranlib -cs /labshare/users\_team/suoning/?????/Cactus/configs/sim/lib/libthorn\_hwloc.a ; fi echo \_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_ --- make\[2\]: ?????/labshare/users\_team/suoning/?????/Cactus/configs/sim/build/hwloc? echo \_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_ --- Checking status of thorn MPI --- make\[2\]: ?????/labshare/users\_team/suoning/?????/Cactus/configs/sim/build/MPI? if \[ ! -d ./ \] ; then mkdir -p ./ ; fi echo CCTK\_THIS\_SUBDIR := ./ > make.identity if \[ ! -d cctk\_Bindings/ \] ; then mkdir -p cctk\_Bindings/ ; fi echo CCTK\_THIS\_SUBDIR := cctk\_Bindings/ > cctk\_Bindings/make.identity if \[ ! -d ./ \] ; then mkdir -p ./ ; fi cd ./ ; make CCTK\_TARGET=make.checked TOP=/labshare/users\_team/suoning/?????/Cactus/configs/sim CONFIG=/labshare/users\_team/suoning/?????/Cactus/configs/sim/config-data SRCDIR=/labshare/users\_team/suoning/?????/Cactus/arrangements/ExternalLibraries/MPI/src THORN=MPI USESTHORNS="hwloc" -f /labshare/users\_team/suoning/?????/Cactus/lib/make/make.subdir make\[3\]: ?????/labshare/users\_team/suoning/?????/Cactus/configs/sim/build/MPI? echo "" > make.checked make\[3\]: ?????/labshare/users\_team/suoning/?????/Cactus/configs/sim/build/MPI? cd cctk\_Bindings; make CCTK\_TARGET=make.checked TOP=/labshare/users\_team/suoning/?????/Cactus/configs/sim CONFIG=/labshare/users\_team/suoning/?????/Cactus/configs/sim/config-data SRCDIR=/labshare/users\_team/suoning/?????/Cactus/configs/sim/bindings/build/MPI THORN=MPI USESTHORNS="hwloc" -f /labshare/users\_team/suoning/?????/Cactus/lib/make/make.subdir make\[3\]: ?????/labshare/users\_team/suoning/?????/Cactus/conf -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2837/building-the-einstein-toolkit -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Tue Dec 17 02:55:21 2024 From: trac-noreply at einsteintoolkit.org (Suo-Ning Wang) Date: Tue, 17 Dec 2024 08:55:21 +0000 Subject: [ET Trac] #2837: Building the Einstein Toolkit Message-ID: #2837: Building the Einstein Toolkit Reporter: Suo-Ning Wang Status: open Milestone: Version: Type: bug Priority: major Component: Comment (by Suo-Ning Wang): /configs/sim/OptionList is below. I don?t find where I can upload the file, I can only paste on this website. I feel so sorry about this. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2837/building-the-einstein-toolkit -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Tue Dec 17 02:56:12 2024 From: trac-noreply at einsteintoolkit.org (Suo-Ning Wang) Date: Tue, 17 Dec 2024 08:56:12 +0000 Subject: [ET Trac] #2837: Building the Einstein Toolkit Message-ID: #2837: Building the Einstein Toolkit Reporter: Suo-Ning Wang Status: open Milestone: Version: Type: bug Priority: major Component: Comment (by Suo-Ning Wang): ``` # generic # This option list is used internally by simfactory as a template during the # sim setup and sim setup-silent commands # Edit at your own risk # Whenever this version string changes, the application is configured # and rebuilt from scratch VERSION = 2018-12-13 CPP = cpp CC = gcc CXX = g++ CUCC = nvcc FPP = cpp F90 = gfortran # for CarpetX GPU support # subset CUCCFLAGS without "-x cu" (must no be used here) and options used only to compile code # -fno-lto can avoid errors connected to fat binaries # LD = nvcc --compiler-bindir g++ -g -fno-lto --forward-unknown-to-host-compiler --relocatable-device-code=true --objdir-as-tempdir CPPFLAGS = FPPFLAGS = -traditional # enable for CarpetX GPU suport # CPPFLAGS = -DSIMD_CPU # use gnu99 and not c99 since FFTW3 relies on gcc's "asm" function CFLAGS = -g -std=gnu99 # if compiler is old and you do not need AMReX, can change to c++11 # leave as c++17 for easier CUDA support CXXFLAGS = -g -std=c++17 -D_GNU_SOURCE CUCCFLAGS = --compiler-bindir g++ -x cu -g -std=c++17 -D_GNU_SOURCE --expt-relaxed-constexpr --extended-lambda --forward-unknown-to-host-compiler --Werror cross-execution-space-call --Werror ext-lambda-captures-this --relocatable-device-code=true --objdir-as-tempdir F90FLAGS = -g -fcray-pointer -ffixed-line-length-none LDFLAGS = -rdynamic # for CUDA support # LIBS = gfortran nvToolsExt curand DEBUG = no CPP_DEBUG_FLAGS = C_DEBUG_FLAGS = CXX_DEBUG_FLAGS = CUCC_DEBUG_FLAGS= OPTIMISE = yes CPP_OPTIMISE_FLAGS = C_OPTIMISE_FLAGS = -O2 CXX_OPTIMISE_FLAGS = -O2 CUCC_OPTIMISE_FLAGS= -O2 F90_OPTIMISE_FLAGS = -O2 PROFILE = no CPP_PROFILE_FLAGS = C_PROFILE_FLAGS = -pg CXX_PROFILE_FLAGS = -pg CUCC_PROFILE_FLAGS= -pg F90_PROFILE_FLAGS = -pg WARN = yes CPP_WARN_FLAGS = -Wall C_WARN_FLAGS = -Wall CXX_WARN_FLAGS = -Wall CUCC_WARN_FLAGS= -Wall F90_WARN_FLAGS = -Wall OPENMP = yes CPP_OPENMP_FLAGS = -fopenmp FPP_OPENMP_FLAGS = -D_OPENMP C_OPENMP_FLAGS = -fopenmp CXX_OPENMP_FLAGS = -fopenmp CUCC_OPENMP_FLAGS= -fopenmp F90_OPENMP_FLAGS = -fopenmp # for CUDA support DISABLE_INT16=yes DISABLE_REAL16=yes VECTORISE = yes VECTORISE_ALIGNED_ARRAYS = no VECTORISE_INLINE = yes AMREX_ENABLE_CUDA = no PTHREADS_DIR = NO_BUILD ``` ? -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2837/building-the-einstein-toolkit -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Tue Dec 17 08:44:18 2024 From: trac-noreply at einsteintoolkit.org (Roland Haas) Date: Tue, 17 Dec 2024 14:44:18 +0000 Subject: [ET Trac] #2837: Building the Einstein Toolkit Message-ID: #2837: Building the Einstein Toolkit Reporter: Suo-Ning Wang Status: open Milestone: Version: Type: bug Priority: major Component: Comment (by Roland Haas): Hello Suo-Ning Wang, Bitbucket unfortunately hides the file attach button behind the ?More? button. ![](https://bitbucket.org/repo/8zBLME5/images/3758663982-2024-12-17T093310.jpg) Looking at your log file \(you can use triple backticks \` to create a ?code? block and avoid pasted text be formatted\) there is the line: ``` cmake -DADIOS2_USE_MPI=ON -DADIOS2_USE_HDF5=OFF -DCMAKE_INSTALL_PREFIX=/labshare/users_team/suoning/?????/Cactus/configs/sim/scratch/external/ADIOS2 -DCMAKE_INSTALL_LIBDIR=lib -DBUILD_TESTING=OFF -DADIOS2_BUILD_EXAMPLES=OFF -DADIOS2_USE_Campaign=OFF -DADIOS2_USE_Fortran=no -DADIOS2_USE_Python=OFF -DADIOS2_USE_ZeroMQ=OFF -DADIOS2_USE_PNG=OFF -DADIOS2_USE_BZip2=OFF -DADIOS2_USE_SST=yes -DADIOS2_USE_BP5=yes -DADIOS2_USE_CUDA= -DBUILD_SHARED_LIBS=OFF -DCMAKE_BUILD_TYPE=Release .. /labshare/users_team/suoning/?????/Cactus/arrangements/ExternalLibraries/ADIOS2/src/build.sh: ? 72: cmake: ????? ``` and Google translate translates the last bit \(in Chinese\) as: ``` cmake: command not found ``` so you are missing the `cmake` command. The simplest way to provide it under Ubuntu is ``` sudo apt install cmake ``` ? This is currently missing from the ?Prerequisites? section of [https://github.com/einsteintoolkit/jupyter-et/blob/master/tutorial-server/notebooks/CactusTutorial.ipynb](https://github.com/einsteintoolkit/jupyter-et/blob/master/tutorial-server/notebooks/CactusTutorial.ipynb) , sorry. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2837/building-the-einstein-toolkit -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Tue Dec 17 08:46:48 2024 From: trac-noreply at einsteintoolkit.org (Roland Haas) Date: Tue, 17 Dec 2024 14:46:48 +0000 Subject: [ET Trac] #2837: Building the Einstein Toolkit Message-ID: #2837: Building the Einstein Toolkit Reporter: Suo-Ning Wang Status: open Milestone: Version: development version Type: bug Priority: major Component: EinsteinToolkit website Changes (by Roland Haas): responsible: [] (was ) component: EinsteinToolkit website (was ) version: development version (was ) assignee: Roland Haas (was ) When I am building the Einstein Toolkit, I find some bug which I cannot solve. `./simfactory/bin/sim build -j2 --thornlist thornlists/einsteintoolkit.th` I want to know what went wrong. ![](https://bitbucket.org/repo/8zBLME5/images/709390997-c10063cf-bf10-4b91-beae-14602e5f2850.png) ? ![](https://bitbucket.org/repo/8zBLME5/images/3831281540-21b902a3-abf7-44a8-9249-52618111b4d1.png) ? -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2837/building-the-einstein-toolkit -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Tue Dec 17 08:59:20 2024 From: trac-noreply at einsteintoolkit.org (Roland Haas) Date: Tue, 17 Dec 2024 14:59:20 +0000 Subject: [ET Trac] #2837: Building the Einstein Toolkit Message-ID: #2837: Building the Einstein Toolkit Reporter: Suo-Ning Wang Status: open Milestone: Version: development version Type: bug Priority: major Component: EinsteinToolkit website Comment (by Roland Haas): Hello Suo-Ning Wang, hmm, actually looking at the paths in your error message, this is not a personal Ubuntu based laptop, is it? Instead this looks like some share university system where you yourself cannot install cmake. If the system offers ?environment modules? \(`module list` / `module load`\) then you can try and see if there is a `cmake` module available \(or, if the system is small enough, the sysadmin may be willing to install a copy of cmake\). If that is not possible then you have to compile your own `cmake`. The easiest way is actually using the EinsteinToolkit where there is a ?branch? that provides cmake. To do so please run \(in the same directory where you first ran \`GetComponents\`\): ``` ./GetComponents --no-update https://bitbucket.org/einsteintoolkit/manifest/raw/a3d645186fc84f605ede2103a6f56ae99fc8c939/einsteintoolkit.th ``` and after that remove your partially compiled code ``` rm -rf Cactus/configs/sim ``` then compile again using `sim build` as shown in the tutorial. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2837/building-the-einstein-toolkit -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Wed Dec 18 07:11:16 2024 From: trac-noreply at einsteintoolkit.org (Suo-Ning Wang) Date: Wed, 18 Dec 2024 13:11:16 +0000 Subject: [ET Trac] #2837: Building the Einstein Toolkit Message-ID: #2837: Building the Einstein Toolkit Reporter: Suo-Ning Wang Status: open Milestone: Version: development version Type: bug Priority: major Component: EinsteinToolkit website Comment (by Suo-Ning Wang): Hello Roland Haas, I'm sorry to bother you again. I have download the cmake and my system is based on Opensuse not Ubuntu. Then I build the toolkit and also made some mistake. I attached the make.log on the website and hope you help me. Thank you again. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2837/building-the-einstein-toolkit -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Wed Dec 18 07:12:01 2024 From: trac-noreply at einsteintoolkit.org (Suo-Ning Wang) Date: Wed, 18 Dec 2024 13:12:01 +0000 Subject: [ET Trac] #2837: Building the Einstein Toolkit Message-ID: #2837: Building the Einstein Toolkit Reporter: Suo-Ning Wang Status: open Milestone: Version: development version Type: bug Priority: major Component: EinsteinToolkit website Comment (by Suo-Ning Wang):
-- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2837/building-the-einstein-toolkit -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Wed Dec 18 07:14:06 2024 From: trac-noreply at einsteintoolkit.org (Suo-Ning Wang) Date: Wed, 18 Dec 2024 13:14:06 +0000 Subject: [ET Trac] #2837: Building the Einstein Toolkit Message-ID: #2837: Building the Einstein Toolkit Reporter: Suo-Ning Wang Status: open Milestone: Version: development version Type: bug Priority: major Component: EinsteinToolkit website Comment (by Suo-Ning Wang): -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2837/building-the-einstein-toolkit -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Wed Dec 18 10:25:43 2024 From: trac-noreply at einsteintoolkit.org (Roland Haas) Date: Wed, 18 Dec 2024 16:25:43 +0000 Subject: [ET Trac] #2837: Building the Einstein Toolkit Message-ID: #2837: Building the Einstein Toolkit Reporter: Suo-Ning Wang Status: open Milestone: Version: development version Type: bug Priority: major Component: EinsteinToolkit website Comment (by Roland Haas): Ok, this seems to not find libsz: ``` libtool: link: g++ -g -std=c++17 -D_GNU_SOURCE -O2 -fopenmp -Wall -rdynamic -Wl,-rpath -Wl,/usr/lib64/gcc/x86_64-suse-linux/14 -o silock silock.o -L/usr/lib64/gcc/x86_64-suse-linux/14 -L/usr/gapps/silo/szip/2.1/i386-pc-linux-gcc-3.2.3/lib ../../src/.libs/libsilo.a -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -lz -lcrypt -lgfortran -lm -lsz -fopenmp /usr/lib64/gcc/x86_64-suse-linux/14/../../../../x86_64-suse-linux/bin/ld: cannot find -lsz: No such file or directory ``` which I have seen on some systems where `libsz` in located in the ?usual? locations or not the ones reported by pkg-config. This path looks suspicious: `/usr/gapps/silo/szip/2.1/i386-pc-linux-gcc-3.2.3/lib` since your system should be am64 or x86\_64 and not i386 \(32bit\). I have no idea where it got that one from though \(the log file says it is a default path provided, but I don?t know who or what may have provided it\). One way to work around this may be to find out where the file `libsz.a` is located and at the _directory_ it is in to \(or add an entry with if not yet there\) to the `LIBDIRS` variable in generic.cfg \(and compile from scratch\). So ``` LIBDIRS= ``` may work for you. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2837/building-the-einstein-toolkit -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Wed Dec 18 16:17:46 2024 From: trac-noreply at einsteintoolkit.org (Roland Haas) Date: Wed, 18 Dec 2024 22:17:46 +0000 Subject: [ET Trac] #2835: add backtrace functionality from CarpetLib Message-ID: #2835: add backtrace functionality from CarpetLib Reporter: Roland Haas Status: new Milestone: Version: development version Type: enhancement Priority: major Component: EinsteinToolkit thorn Comment (by Roland Haas): @{557058:56049c54-f8c2-4b6c-9b88-ab697c967495} suggested a separate thorn. Here?s one: [https://bitbucket.org/cactuscode/cactusutils/pull-requests/44](https://bitbucket.org/cactuscode/cactusutils/pull-requests/44) -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2835/add-backtrace-functionality-from-carpetlib -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Wed Dec 18 16:19:01 2024 From: trac-noreply at einsteintoolkit.org (Roland Haas) Date: Wed, 18 Dec 2024 22:19:01 +0000 Subject: [ET Trac] #2835: add backtrace functionality from CarpetLib Message-ID: #2835: add backtrace functionality from CarpetLib Reporter: Roland Haas Status: new Milestone: Version: development version Type: enhancement Priority: major Component: EinsteinToolkit thorn Comment (by Roland Haas): Please review. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2835/add-backtrace-functionality-from-carpetlib -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Wed Dec 18 16:19:15 2024 From: trac-noreply at einsteintoolkit.org (Roland Haas) Date: Wed, 18 Dec 2024 22:19:15 +0000 Subject: [ET Trac] #2835: add backtrace functionality from CarpetLib Message-ID: #2835: add backtrace functionality from CarpetLib Reporter: Roland Haas Status: open Milestone: Version: development version Type: enhancement Priority: major Component: EinsteinToolkit thorn Changes (by Roland Haas): status: open (was new) -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2835/add-backtrace-functionality-from-carpetlib -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Thu Dec 19 08:19:38 2024 From: trac-noreply at einsteintoolkit.org (Suo-Ning Wang) Date: Thu, 19 Dec 2024 14:19:38 +0000 Subject: [ET Trac] #2837: Building the Einstein Toolkit Message-ID: #2837: Building the Einstein Toolkit Reporter: Suo-Ning Wang Status: open Milestone: Version: development version Type: bug Priority: major Component: EinsteinToolkit website Comment (by Suo-Ning Wang): Hello Roland Haas, I have solved the libsz. But I build the toolkit on Ubuntu and Opensuse, but both of them have other problems. I have uploaded two different make.log to the attachment. Due to the time difference between us, I apologize for not being able to communicate with you in a timely manner as I replied to your message before I went to bed. Thank you again. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2837/building-the-einstein-toolkit -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Thu Dec 19 08:20:21 2024 From: trac-noreply at einsteintoolkit.org (Suo-Ning Wang) Date: Thu, 19 Dec 2024 14:20:21 +0000 Subject: [ET Trac] #2837: Building the Einstein Toolkit Message-ID: #2837: Building the Einstein Toolkit Reporter: Suo-Ning Wang Status: open Milestone: Version: development version Type: bug Priority: major Component: EinsteinToolkit website Comment (by Suo-Ning Wang): -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2837/building-the-einstein-toolkit -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Thu Dec 19 08:24:52 2024 From: trac-noreply at einsteintoolkit.org (Suo-Ning Wang) Date: Thu, 19 Dec 2024 14:24:52 +0000 Subject: [ET Trac] #2837: Building the Einstein Toolkit Message-ID: #2837: Building the Einstein Toolkit Reporter: Suo-Ning Wang Status: open Milestone: Version: development version Type: bug Priority: major Component: EinsteinToolkit website Comment (by Suo-Ning Wang): libtool usually makes mistakes. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2837/building-the-einstein-toolkit -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Thu Dec 19 09:33:41 2024 From: trac-noreply at einsteintoolkit.org (Zach Etienne) Date: Thu, 19 Dec 2024 15:33:41 +0000 Subject: [ET Trac] #2837: Building the Einstein Toolkit Message-ID: #2837: Building the Einstein Toolkit Reporter: Suo-Ning Wang Status: open Milestone: Version: development version Type: bug Priority: major Component: EinsteinToolkit website Comment (by Zach Etienne): @{712020:925bcc1f-d1fb-49d1-aac7-8473c11b6721} : I looked into the Ubuntu make log. I believe the issue is that ADIOS2 has some build problem with `make -j6`. Try either installing separately ADIOS2 using `spack` or build the Toolkit using `make -j1` \(sorry, it will be very slow\). -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2837/building-the-einstein-toolkit -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Fri Dec 20 07:12:59 2024 From: trac-noreply at einsteintoolkit.org (Suo-Ning Wang) Date: Fri, 20 Dec 2024 13:12:59 +0000 Subject: [ET Trac] #2837: Building the Einstein Toolkit Message-ID: #2837: Building the Einstein Toolkit Reporter: Suo-Ning Wang Status: open Milestone: Version: development version Type: bug Priority: major Component: EinsteinToolkit website Comment (by Suo-Ning Wang): Hi Zach Etienne and Roland Haas, I used j1 to build the toolkit and I also find problems. I don?t know where the mistake is and I attach the make.log on the website. I hope you can help me again. Thank you very much. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2837/building-the-einstein-toolkit -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Fri Dec 20 07:13:49 2024 From: trac-noreply at einsteintoolkit.org (Suo-Ning Wang) Date: Fri, 20 Dec 2024 13:13:49 +0000 Subject: [ET Trac] #2837: Building the Einstein Toolkit Message-ID: #2837: Building the Einstein Toolkit Reporter: Suo-Ning Wang Status: open Milestone: Version: development version Type: bug Priority: major Component: EinsteinToolkit website Comment (by Suo-Ning Wang): use j1 to build the toolkit -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2837/building-the-einstein-toolkit -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Fri Dec 20 07:40:57 2024 From: trac-noreply at einsteintoolkit.org (Zach Etienne) Date: Fri, 20 Dec 2024 13:40:57 +0000 Subject: [ET Trac] #2837: Building the Einstein Toolkit Message-ID: #2837: Building the Einstein Toolkit Reporter: Suo-Ning Wang Status: open Milestone: Version: development version Type: bug Priority: major Component: EinsteinToolkit website Comment (by Zach Etienne): @{712020:925bcc1f-d1fb-49d1-aac7-8473c11b6721} @{557058:59e031ba-9bb5-4298-a472-7b99d0ae6f22} : I may have found the solution. Please read here: [https://github.com/ornladios/ADIOS2/issues/1738](https://github.com/ornladios/ADIOS2/issues/1738) @{557058:59e031ba-9bb5-4298-a472-7b99d0ae6f22} : We may need to update our build config for ADIOS2? -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2837/building-the-einstein-toolkit -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Fri Dec 20 14:48:45 2024 From: trac-noreply at einsteintoolkit.org (Roland Haas) Date: Fri, 20 Dec 2024 20:48:45 +0000 Subject: [ET Trac] #2837: Building the Einstein Toolkit Message-ID: #2837: Building the Einstein Toolkit Reporter: Suo-Ning Wang Status: open Milestone: Version: development version Type: bug Priority: major Component: EinsteinToolkit website Comment (by Roland Haas): Does the GitHub issue actually provide a solution? The last item there reads ? > This issue hasn't been updated for a long time, with no info coming in that the problem still exists... If it does, please re-open. ? I see `cmake -DADIOS2_USE_SST=OFF` as one proposed item. I think we either already turn off SST \(or at least did in the past\) or we need SST for BP5 support. At least I recall having used some SST option. See: [https://github.com/EinsteinToolkit/ExternalLibraries-ADIOS2/commit/a15fe948f6fe1ee2b5c9bfe028c675d68bd0a77c](https://github.com/EinsteinToolkit/ExternalLibraries-ADIOS2/commit/a15fe948f6fe1ee2b5c9bfe028c675d68bd0a77c) we do have an option `ADIOS2_ENABLE_SST ` that one can set to ?no? in the option list to disable SST. Note: [https://github.com/EinsteinToolkit/ExternalLibraries-ADIOS2/commit/63527f8086a2548c8f62d6a95b665b681c0fac68](https://github.com/EinsteinToolkit/ExternalLibraries-ADIOS2/commit/63527f8086a2548c8f62d6a95b665b681c0fac68) though. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2837/building-the-einstein-toolkit -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Sat Dec 21 06:11:33 2024 From: trac-noreply at einsteintoolkit.org (Suo-Ning Wang) Date: Sat, 21 Dec 2024 12:11:33 +0000 Subject: [ET Trac] #2837: Building the Einstein Toolkit Message-ID: #2837: Building the Einstein Toolkit Reporter: Suo-Ning Wang Status: open Milestone: Version: development version Type: bug Priority: major Component: EinsteinToolkit website Comment (by Suo-Ning Wang): @Zach Etienne?I have looked at the solution you provided, and I don't know which file the code cmake - DADIOS2-USE\_SST=OFF should be placed in. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2837/building-the-einstein-toolkit -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Sat Dec 21 06:20:40 2024 From: trac-noreply at einsteintoolkit.org (Suo-Ning Wang) Date: Sat, 21 Dec 2024 12:20:40 +0000 Subject: [ET Trac] #2837: Building the Einstein Toolkit Message-ID: #2837: Building the Einstein Toolkit Reporter: Suo-Ning Wang Status: open Milestone: Version: development version Type: bug Priority: major Component: EinsteinToolkit website Comment (by Suo-Ning Wang): @**Roland Haas** I closed SST using your method by change `/Cactus/repos/ExternalLibraries-ADIOS2/src/build.sh`, the path should be right and SST is closed. But I still generated the same error message. I don't know if what I did was correct. I will upload screenshots of my errors and make. log. ![](https://bitbucket.org/repo/8zBLME5/images/2716362197-89e8b3d0-aced-4858-b0ab-8d59d9cfc9fb.png) ![](https://bitbucket.org/repo/8zBLME5/images/3532602789-03480478-c23a-42e3-9793-4637c898d775.png) ? -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2837/building-the-einstein-toolkit -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Sat Dec 21 06:23:55 2024 From: trac-noreply at einsteintoolkit.org (Suo-Ning Wang) Date: Sat, 21 Dec 2024 12:23:55 +0000 Subject: [ET Trac] #2837: Building the Einstein Toolkit Message-ID: #2837: Building the Einstein Toolkit Reporter: Suo-Ning Wang Status: open Milestone: Version: development version Type: bug Priority: major Component: EinsteinToolkit website Comment (by Suo-Ning Wang): CMake warning -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2837/building-the-einstein-toolkit -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Sat Dec 21 06:29:15 2024 From: trac-noreply at einsteintoolkit.org (Suo-Ning Wang) Date: Sat, 21 Dec 2024 12:29:15 +0000 Subject: [ET Trac] #2837: Building the Einstein Toolkit Message-ID: #2837: Building the Einstein Toolkit Reporter: Suo-Ning Wang Status: open Milestone: Version: development version Type: bug Priority: major Component: EinsteinToolkit website Comment (by Suo-Ning Wang): Besides, there are many warnings during the operation, will this have an impact? Besides at Ubuntu, I tried building the toolkit on two opensuse computers and got the same error,e.g. libtool: error: cannot determine absolute directory name of '-pthread'. I would greatly appreciate it if you could provide assistance. Best wishes. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2837/building-the-einstein-toolkit -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Fri Dec 27 16:01:03 2024 From: trac-noreply at einsteintoolkit.org (Roland Haas) Date: Fri, 27 Dec 2024 22:01:03 +0000 Subject: [ET Trac] #1566: Update Cactus autoconf Message-ID: #1566: Update Cactus autoconf Reporter: Erik Schnetter Status: new Milestone: Version: development version Type: enhancement Priority: major Component: Cactus Comment (by Roland Haas): Applied as git hash [c7510100](https://bitbucket.org/cactuscode/cactus/commits/c75101005c5f82f67f0ca420d27e89f2040cc113) "Cactus: regenerate configure" of [cactus](https://bitbucket.org/cactuscode/cactus) -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/1566/update-cactus-autoconf -------------- next part -------------- An HTML attachment was scrubbed... URL: From trac-noreply at einsteintoolkit.org Fri Dec 27 16:01:23 2024 From: trac-noreply at einsteintoolkit.org (Roland Haas) Date: Fri, 27 Dec 2024 22:01:23 +0000 Subject: [ET Trac] #1566: Update Cactus autoconf Message-ID: #1566: Update Cactus autoconf Reporter: Erik Schnetter Status: resolved Milestone: Version: development version Type: enhancement Priority: major Component: Cactus Changes (by Roland Haas): status: resolved (was new) -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/1566/update-cactus-autoconf -------------- next part -------------- An HTML attachment was scrubbed... URL: