[Users] Tutorial config error on QueenBee

Scott Hawley scott.hawley at belmont.edu
Wed Jun 15 21:53:55 CDT 2011


Hi.  Apparently there's a problem with MPICH on QueenBee?  

queebee options obtained from  https://svn.cct.lsu.edu/repos/cactus/tutorials/introduction/examples/Cactus/misc/queenbee.config
-Scott


[shawley at qb3 ~/Cactus]$ gmake etk THORNLIST=manifest/einsteintoolkit.th options=queenbee.options 
________________________________________________________________________
Cactus - version: 4.0.b17
Setup configuration etk (yes)?
yes
Setting up new configuration etk
Completely new cactus build.  Creating config database
Creating new configuration etk.
Using configuration options from configure line
  Setting THORNLIST to 'manifest/einsteintoolkit.th'
End of options from configure line
Adding configuration options from 'queenbee.options'...
  Setting VERSION to '2009-06-19'
  Setting CPP to 'cpp'
  Setting FPP to 'cpp'
  Setting CC to 'icc'
  Setting CXX to 'icpc'
  Setting F77 to 'ifort'
  Setting F90 to 'ifort'
  Setting CFLAGS to '-g -std=gnu99 -ansi_alias'
  Setting CXXFLAGS to '-g -std=gnu99 -restrict'
  Setting CPPFLAGS to '-g -DMPICH_IGNORE_CXX_SEEK'
  Setting LDFLAGS to '-g -Wl,-rpath,/home/eschnett/hdf5-1.8.2/lib -Wl,-rpath,/usr/local/packages/gsl-1.9-intel9.1/lib'
  Setting DEBUG to 'no'
  Setting PROFILE to 'no'
  Setting WARN to 'yes'
  Setting OPTIMISE to 'yes'
  Setting C_OPTIMISE_FLAGS to '-O2'
  Setting CXX_OPTIMISE_FLAGS to '-O2'
  Setting F77_OPTIMISE_FLAGS to '-O2'
  Setting F90_OPTIMISE_FLAGS to '-O2'
  Setting GSL_DIR to '/usr/local/packages/gsl-1.9-intel9.1'
  Setting HDF5 to 'yes'
  Setting HDF5_DIR to '/home/eschnett/hdf5-1.8.2'
  Setting MPI to 'MPICH'
  Setting MPICH_DIR to '/usr/local/packages/mvapich-0.98-intel10.1'
  Setting MPICH_DEVICE to 'ch_gen2'
  Setting PTHREADS to 'yes'
  Setting LIBXML2_DIR to '/home/knarf/utils'
End of options from 'queenbee.options'.
creating cache ./config.cache
checking host system type... x86_64-unknown-linux-gnu
checking whether make sets ${MAKE}... yes
checking whether the C compiler (icc -g -std=gnu99 -ansi_alias -g -Wl,-rpath,/home/eschnett/hdf5-1.8.2/lib -Wl,-rpath,/usr/local/packages/gsl-1.9-intel9.1/lib) works... yes
checking whether the C compiler (icc -g -std=gnu99 -ansi_alias -g -Wl,-rpath,/home/eschnett/hdf5-1.8.2/lib -Wl,-rpath,/usr/local/packages/gsl-1.9-intel9.1/lib) is a cross-compiler... no
checking whether we are using GNU C... yes
checking whether the C++ compiler (icpc -g -std=gnu99 -restrict -g -Wl,-rpath,/home/eschnett/hdf5-1.8.2/lib -Wl,-rpath,/usr/local/packages/gsl-1.9-intel9.1/lib) works... yes
checking whether the C++ compiler (icpc -g -std=gnu99 -restrict -g -Wl,-rpath,/home/eschnett/hdf5-1.8.2/lib -Wl,-rpath,/usr/local/packages/gsl-1.9-intel9.1/lib) is a cross-compiler... no
checking whether we are using GNU C++... yes
checking for ranlib... ranlib
checking for nvcc... no
checking for perl... perl
checking for gtar... gtar
checking for gzip... gzip
checking for gpatch... no
checking for patch... patch
checking for git... git
checking for ar... ar
checking for mkdir... mkdir
checking for bash... /bin/sh
Setting CACHELINE_BYTES to 64
Setting CACHE_SIZE to 6144*1024 bytes
checking how to run the C preprocessor... cpp
checking for ANSI C header files... yes
checking whether byte ordering is bigendian... no
checking size of long long... 8
checking size of long int... 8
checking size of int... 4
checking size of short int... 2
checking size of long double... 16
checking size of double... 8
checking size of float... 4
checking size of char *... 8
checking for the null device... /dev/null
checking for gethostbyname... yes
checking whether mode_t is defined... yes
checking for availability of gettimeofday timing... yes
checking if gettimeofday needs timezone... yes
checking for availability of getrusage timing... yes
checking for availability of _ftime timing... no
checking for time.h... yes
checking for sys/time.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for string.h... yes
checking for assert.h... yes
checking for tgmath.h... yes
checking for sys/stat.h... yes
checking for getopt.h... yes
checking for dirent.h... yes
checking for c_asm.h... no
checking for intrinsics.h... no
checking for mach/mach_time.h... no
checking for regex.h... yes
checking for sys/filio.h... no
checking for sys/ioctl.h... yes
checking for sys/socket.h... yes
checking for netinet/in.h... yes
checking for netdb.h... yes
checking for arpa/inet.h... yes
checking for winsock2.h... no
checking for crypt.h... yes
checking for signal.h... yes
checking for malloc.h... yes
checking whether time.h and sys/time.h may both be included... yes
checking whether socklen_t is defined... yes
checking whether SOCKET is defined... no
checking for hrtime_t... no
checking for gethrtime... no
checking for read_real_time... no
checking for time_base_to_time... no
checking for clock_gettime... no
checking for mach_absolute_time... no
checking for _rtc intrinsic... no
checking for mallinfo... yes
checking for mallopt... yes
checking whether M_MMAP_THRESHOLD is defined... yes
checking if __int64 is defined... yes
checking for vector... yes
checking for vector.h... yes
checking for getopt_long_only... yes
checking for working const... yes
checking for C inline... inline
checking for C static inline... static inline
checking for C restrict... restrict
checking for C++ restrict... restrict
checking for C bool... no
checking for CXX bool... yes
checking for C _Pragma... yes
checking for C function __attribute__((__noinline__))... yes
checking for CXX function __attribute__((__noinline__))... yes
checking for CXX member function __attribute__((__noinline__))... yes
checking for C __attribute__((__unused__))... yes
checking for CXX __attribute__((__unused__))... yes
checking for C __attribute__((__aligned__(...)))... yes
checking for CXX __attribute__((__aligned__(...)))... yes
checking for Fortran REAL*4... yes
checking for Fortran REAL*8... yes
checking for Fortran REAL*16... yes
checking for Fortran COMPLEX*8... yes
checking for Fortran COMPLEX*16... yes
checking for Fortran COMPLEX*32... yes
checking for crypt... no
checking for crypt in library crypt... yes
checking for finite... yes
checking for isnan... yes
checking for isinf... yes
checking for mkstemp... yes
checking for va_copy... yes
checking for main in library c_r... no
checking for main in library pthread... yes
Configuring with HDF5.
  Using HDF5 package in /home/eschnett/hdf5-1.8.2
Configuring with MPI
  MPICH selected
  Cannot execute /usr/local/packages/mvapich-0.98-intel10.1/bin/tarch

Error creating configuration etk
gmake: *** [etk] Error 2

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