[Users] HDF5 compile issues w/ or w/o CactusExternal/HDF5
Luca Baiotti
baiotti at ile.osaka-u.ac.jp
Sat Jun 18 20:10:26 CDT 2011
Scott,
it seems that your compiler does not allow the --enable-cxx option:
"
configure: error: An MPI compiler is being used; --enable-cxx is not allowed
"
Luca
On 19/6/11 9:07 AM, Scott Hawley wrote:
> Thanks Luca. When I compile in CactusExternal/HDF5 and don't set any options, then I get the error shown at the bottom of that run log I included in the message.
>
> %Sent from my iPhone
>
> On Jun 18, 2011, at 6:41 PM, "Luca Baiotti"<baiotti at ile.osaka-u.ac.jp> wrote:
>
>> Hi Scott,
>>
>> in order to use HDF5, as far as I know:
>>
>> - thorn CactusExternal/HDF5 must be compiled in (irrespective of the
>> option settings)
>>
>> - you must never set HDF5 = YES (do not set 'HDF5=' at all)
>>
>> - you can either set HDF5_DIR =<your installation directory> or leave
>> also this setting out of your option list; in the latter case Cactus
>> will build its own HDF5 libraries from source.
>>
>>
>>
>> Hope this helps,
>>
>> Luca
>>
>>
>> On 19/6/11 6:53 AM, Scott Hawley wrote:
>>> Hi.
>>> I'm unable to get HDF5 capability to install. If I set HDF5_DIR=/sw, which is the installation already on my machine, I get the error message that I need a thorn that implements HDF5. ("CST error 1: -> Thorn 'CarpetIOHDF5' requires the capability 'HDF5'.
>>> Please add a thorn that provides 'HDF5' to your ThornList or remove 'CarpetIOHDF5' from it !")
>>>
>>>
>>> If I leave HDF5_DIR unset (and all other "HDF5" flags unset as well) and include CactusExternal/HDF5 in my Thornlist, then I also get an error message saying it's unable to compile, as shown below.
>>>
>>> To be clear, the options settings which are either left in the file or commented out via "#", are:
>>>
>>> HDF5 = YES
>>> HDF5_DIR = /sw
>>> ZLIB_DIR = /sw
>>>
>>> I tried searching online for previous users messages about this or instructions and have not found them.
>>>
>>> What am I doing wrong?
>>> Thanks,
>>> -Scott
>>>
>>>
>>> example of compilation with no HDF5 flags set:
>>>
>>> % gmake texmex
>>>
>>> ...skipping...
>>>
>>> + echo 'HDF5 selected, but HDF5_DIR not set. Checking some places...'
>>> + echo 'END MESSAGE'
>>> ++ '[' gfortran '!=' none ']'
>>> ++ echo lib/libhdf5_fortran.a
>>> + FILES='include/hdf5.h lib/libhdf5.a lib/libhdf5_cpp.a lib/libhdf5_fortran.a lib/libhdf5_hl.a lib/libhdf5_hl_cpp.a'
>>> + DIRS='/usr /usr/local /usr/local/hdf5 /usr/local/packages/hdf5 /usr/local/apps/hdf5 /opt/local /Users/shawley /Users/shawley/hdf5 c:/packages/hdf5'
>>> + for dir in '$DIRS'
>>> + HDF5_DIR=/usr
>>> + for file in '$FILES'
>>> + '[' '!' -r /usr/include/hdf5.h ']'
>>> + unset HDF5_DIR
>>> + break
>>> + '[' -n '' ']'
>>> + for dir in '$DIRS'
>>> + HDF5_DIR=/usr/local
>>> + for file in '$FILES'
>>> + '[' '!' -r /usr/local/include/hdf5.h ']'
>>> + unset HDF5_DIR
>>> + break
>>> + '[' -n '' ']'
>>> + for dir in '$DIRS'
>>> + HDF5_DIR=/usr/local/hdf5
>>> + for file in '$FILES'
>>> + '[' '!' -r /usr/local/hdf5/include/hdf5.h ']'
>>> + unset HDF5_DIR
>>> + break
>>> + '[' -n '' ']'
>>> + for dir in '$DIRS'
>>> + HDF5_DIR=/usr/local/packages/hdf5
>>> + for file in '$FILES'
>>> + '[' '!' -r /usr/local/packages/hdf5/include/hdf5.h ']'
>>> + unset HDF5_DIR
>>> + break
>>> + '[' -n '' ']'
>>> + for dir in '$DIRS'
>>> + HDF5_DIR=/usr/local/apps/hdf5
>>> + for file in '$FILES'
>>> + '[' '!' -r /usr/local/apps/hdf5/include/hdf5.h ']'
>>> + unset HDF5_DIR
>>> + break
>>> + '[' -n '' ']'
>>> + for dir in '$DIRS'
>>> + HDF5_DIR=/opt/local
>>> + for file in '$FILES'
>>> + '[' '!' -r /opt/local/include/hdf5.h ']'
>>> + unset HDF5_DIR
>>> + break
>>> + '[' -n '' ']'
>>> + for dir in '$DIRS'
>>> + HDF5_DIR=/Users/shawley
>>> + for file in '$FILES'
>>> + '[' '!' -r /Users/shawley/include/hdf5.h ']'
>>> + unset HDF5_DIR
>>> + break
>>> + '[' -n '' ']'
>>> + for dir in '$DIRS'
>>> + HDF5_DIR=/Users/shawley/hdf5
>>> + for file in '$FILES'
>>> + '[' '!' -r /Users/shawley/hdf5/include/hdf5.h ']'
>>> + unset HDF5_DIR
>>> + break
>>> + '[' -n '' ']'
>>> + for dir in '$DIRS'
>>> + HDF5_DIR=c:/packages/hdf5
>>> + for file in '$FILES'
>>> + '[' '!' -r c:/packages/hdf5/include/hdf5.h ']'
>>> + unset HDF5_DIR
>>> + break
>>> + '[' -n '' ']'
>>> + '[' -z '' ']'
>>> + echo 'BEGIN MESSAGE'
>>> + echo 'HDF5 not found'
>>> + echo 'END MESSAGE'
>>> + '[' -z '' -o '' = BUILD ']'
>>> + echo 'BEGIN MESSAGE'
>>> + echo 'Building HDF5...'
>>> + echo 'END MESSAGE'
>>> + THORN=HDF5
>>> + NAME=hdf5-1.8.6
>>> ++ dirname /Users/shawley/Cactus/arrangements/ExternalLibraries/HDF5/HDF5.sh
>>> + SRCDIR=/Users/shawley/Cactus/arrangements/ExternalLibraries/HDF5
>>> + BUILD_DIR=/Users/shawley/Cactus/configs/texmex/scratch/build/HDF5
>>> + INSTALL_DIR=/Users/shawley/Cactus/configs/texmex/scratch/external/HDF5
>>> + DONE_FILE=/Users/shawley/Cactus/configs/texmex/scratch/done/HDF5
>>> + HDF5_DIR=/Users/shawley/Cactus/configs/texmex/scratch/external/HDF5
>>> + exec
>>> + set -x
>>> + set -e
>>> + cd /Users/shawley/Cactus/configs/texmex/scratch
>>> + '[' -e /Users/shawley/Cactus/configs/texmex/scratch/done/HDF5 -a /Users/shawley/Cactus/configs/texmex/scratch/done/HDF5 -nt /Users/shawley/Cactus/arrangements/ExternalLibraries/HDF5/dist/hdf5-1.8.6.tar.gz -a /Users/shawley/Cactus/configs/texmex/scratch/done/HDF5 -nt /Users/shawley/Cactus/arrangements/ExternalLibraries/HDF5/HDF5.sh ']'
>>> + echo 'HDF5: Building enclosed HDF5 library'
>>> HDF5: Building enclosed HDF5 library
>>> ++ gmake --help
>>> ++ echo make
>>> + MAKE=make
>>> ++ gtar --help
>>> ++ echo gtar
>>> + TAR=gtar
>>> + '[' -z patch ']'
>>> + '[' gfortran = none ']'
>>> + export FC=gfortran
>>> + FC=gfortran
>>> + export FCFLAGS=-m64
>>> + FCFLAGS=-m64
>>> + export LDFLAGS
>>> + unset LIBS
>>> + unset RPATH
>>> + echo '' rucs
>>> + grep 64
>>> + echo 'HDF5: Preparing directory structure...'
>>> HDF5: Preparing directory structure...
>>> + mkdir build external done
>>> + true
>>> + rm -rf /Users/shawley/Cactus/configs/texmex/scratch/build/HDF5 /Users/shawley/Cactus/configs/texmex/scratch/external/HDF5
>>> + mkdir /Users/shawley/Cactus/configs/texmex/scratch/build/HDF5 /Users/shawley/Cactus/configs/texmex/scratch/external/HDF5
>>> + echo 'HDF5: Unpacking archive...'
>>> HDF5: Unpacking archive...
>>> + pushd /Users/shawley/Cactus/configs/texmex/scratch/build/HDF5
>>> ~/Cactus/configs/texmex/scratch/build/HDF5 ~/Cactus/configs/texmex/scratch
>>> + gtar xzf /Users/shawley/Cactus/arrangements/ExternalLibraries/HDF5/dist/hdf5-1.8.6.tar.gz
>>> + patch -p0
>>> patching file hdf5-1.8.6/test/dt_arith.c
>>> + echo 'HDF5: Configuring...'
>>> HDF5: Configuring...
>>> + cd hdf5-1.8.6
>>> ++ '[' -n gfortran ']'
>>> ++ echo '' --enable-fortran
>>> + ./configure --prefix=/Users/shawley/Cactus/configs/texmex/scratch/external/HDF5 --with-zlib=/Users/shawley/Cactus/configs/texmex/scratch/external/zlib --enable-cxx --enable-fortran
>>> checking for a BSD-compatible install... usage: install installation-prefix
>>>
>>> Example: install /usr/local
>>>
>>> Note: See script source for user-modifiable environment variables that may
>>> need to be tailored to your desired compilation environment.
>>> /usr/bin/install -c
>>> checking whether build environment is sane... yes
>>> checking for a thread-safe mkdir -p... bin/install-sh -c -d
>>> checking for gawk... gawk
>>> checking whether make sets $(MAKE)... yes
>>> checking whether to enable maintainer-specific portions of Makefiles... no
>>> checking build system type... i386-apple-darwin10.7.4
>>> checking host system type... i386-apple-darwin10.7.4
>>> checking shell variables initial values... done
>>> checking if basename works... yes
>>> checking if xargs works... yes
>>> checking for cached host... none
>>> checking for config i386-apple-darwin10.7.4... no
>>> checking for config i386-apple-darwin10.7.4... no
>>> checking for config apple-darwin10.7.4... no
>>> checking for config apple-darwin10.7.4... no
>>> checking for config i386-darwin10.7.4... no
>>> checking for config i386-darwin10.7.4... no
>>> checking for config i386-apple... no
>>> checking for config darwin10.7.4... no
>>> checking for config darwin10.7.4... no
>>> checking for config apple... found
>>> compiler '/sw/bin/mpicc' is GNU gcc-4.2.1
>>> compiler 'gfortran' is GNU gfortran-4.4.4
>>> Warning: shared libraries are not supported with Fortran
>>> Disabling shared libraries
>>> No match to get cc_version_info for /sw/bin/mpicc
>>> No match to get cxx_version_info for /sw/bin/mpic++
>>> checking for config ./config/site-specific/host-provision.local... no
>>> checking for config ./config/site-specific/host-local... no
>>> checking for gcc... /sw/bin/mpicc
>>> checking whether the C compiler works... yes
>>> checking for C compiler default output file name... a.out
>>> checking for suffix of executables...
>>> checking whether we are cross compiling... no
>>> checking for suffix of object files... o
>>> checking whether we are using the GNU C compiler... yes
>>> checking whether /sw/bin/mpicc accepts -g... yes
>>> checking for /sw/bin/mpicc option to accept ISO C89... none needed
>>> checking for style of include used by make... GNU
>>> checking dependency style of /sw/bin/mpicc... gcc3
>>> checking if Fortran interface enabled... yes
>>> checking whether we are using the GNU Fortran compiler... yes
>>> checking whether gfortran accepts -g... yes
>>> checking for Fortran flag to compile .f90 files... none
>>> checking whether we are using the GNU Fortran compiler... (cached) yes
>>> checking whether gfortran accepts -g... (cached) yes
>>> checking what gfortran does with modules... MODULE.mod
>>> checking how gfortran finds modules... -I
>>> checking how to get verbose linking output from gfortran... -v
>>> checking for Fortran libraries of gfortran... -L/sw/lib -L/Users/shawley/lib -L/Users/shawley/texmex/lib -L/sw/lib/gcc4.4/lib/ -L/sw/lib/gcc4.4/lib/gcc/x86_64-apple-darwin10.7.3/4.4.4 -L/sw/lib/gcc4.4/lib/gcc/x86_64-apple-darwin10.7.3/4.4.4/../../.. -lgfortranbegin -lgfortran
>>> checking for dummy main to link with Fortran libraries... none
>>> checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore
>>> checking if Fortran compiler supports intrinsic SIZEOF... yes
>>> checking if Fortran default REAL is DOUBLE PRECISION... no
>>> checking whether we are using the GNU C++ compiler... yes
>>> checking whether /sw/bin/mpic++ accepts -g... yes
>>> checking dependency style of /sw/bin/mpic++... gcc3
>>> checking how to run the C++ preprocessor... /sw/bin/mpic++ -E
>>> checking if c++ interface enabled... yes
>>> checking if /sw/bin/mpic++ needs old style header files in includes... no
>>> checking if /sw/bin/mpic++ can handle namespaces... yes
>>> checking if /sw/bin/mpic++ supports std... yes
>>> checking if /sw/bin/mpic++ supports bool types... yes
>>> checking if /sw/bin/mpic++ has offsetof extension... yes
>>> checking if /sw/bin/mpic++ can handle static cast... yes
>>> checking for perl... perl
>>> checking whether make sets $(MAKE)... (cached) yes
>>> checking for tr... /usr/bin/tr
>>> checking if srcdir= and time commands work together... yes
>>> checking for mpiexec... none
>>> checking how to print strings... printf
>>> checking for a sed that does not truncate output... /usr/bin/sed
>>> checking for grep that handles long lines and -e... /usr/bin/grep
>>> checking for egrep... /usr/bin/grep -E
>>> checking for fgrep... /usr/bin/grep -F
>>> checking for ld used by /sw/bin/mpicc... /sw/bin/mpic++
>>> checking if the linker (/sw/bin/mpic++) is GNU ld... no
>>> checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm
>>> checking the name lister (/usr/bin/nm) interface... BSD nm
>>> checking whether ln -s works... yes
>>> checking the maximum length of command line arguments... 196608
>>> checking whether the shell understands some XSI constructs... yes
>>> checking whether the shell understands "+="... yes
>>> checking for /sw/bin/mpic++ option to reload object files... -r
>>> checking for objdump... no
>>> checking how to recognize dependent libraries... pass_all
>>> checking for ar... ar
>>> checking for strip... strip
>>> checking for ranlib... ranlib
>>> checking command to parse /usr/bin/nm output from /sw/bin/mpicc object... ok
>>> checking for dsymutil... dsymutil
>>> checking for nmedit... nmedit
>>> checking for lipo... lipo
>>> checking for otool... otool
>>> checking for otool64... no
>>> checking for -single_module linker flag... yes
>>> checking for -exported_symbols_list linker flag... yes
>>> checking for -force_load linker flag... yes
>>> checking how to run the C preprocessor... /usr/bin/cpp
>>> checking for ANSI C header files... yes
>>> checking for sys/types.h... yes
>>> checking for sys/stat.h... yes
>>> checking for stdlib.h... yes
>>> checking for string.h... yes
>>> checking for memory.h... yes
>>> checking for strings.h... yes
>>> checking for inttypes.h... yes
>>> checking for stdint.h... yes
>>> checking for unistd.h... yes
>>> checking for dlfcn.h... yes
>>> checking for objdir... .libs
>>> checking if /sw/bin/mpicc supports -fno-rtti -fno-exceptions... no
>>> checking for /sw/bin/mpicc option to produce PIC... -fno-common -DPIC
>>> checking if /sw/bin/mpicc PIC flag -fno-common -DPIC works... yes
>>> checking if /sw/bin/mpicc static flag -static works... no
>>> checking if /sw/bin/mpicc supports -c -o file.o... yes
>>> checking if /sw/bin/mpicc supports -c -o file.o... (cached) yes
>>> checking whether the /sw/bin/mpicc linker (/sw/bin/mpic++) supports shared libraries... yes
>>> checking dynamic linker characteristics... darwin10.7.4 dyld
>>> checking how to hardcode library paths into programs... immediate
>>> checking for dlopen in -ldl... yes
>>> checking whether a program can dlopen itself... yes
>>> checking whether a statically linked program can dlopen itself... yes
>>> checking whether stripping libraries is possible... yes
>>> checking if libtool supports shared libraries... yes
>>> checking whether to build shared libraries... no
>>> checking whether to build static libraries... yes
>>> checking how to run the C++ preprocessor... /sw/bin/mpic++ -E
>>> checking for ld used by /sw/bin/mpic++... /sw/bin/mpic++
>>> checking if the linker (/sw/bin/mpic++) is GNU ld... no
>>> checking whether the /sw/bin/mpic++ linker (/sw/bin/mpic++) supports shared libraries... yes
>>> checking for /sw/bin/mpic++ option to produce PIC... -fno-common -DPIC
>>> checking if /sw/bin/mpic++ PIC flag -fno-common -DPIC works... yes
>>> checking if /sw/bin/mpic++ static flag -static works... no
>>> checking if /sw/bin/mpic++ supports -c -o file.o... yes
>>> checking if /sw/bin/mpic++ supports -c -o file.o... (cached) yes
>>> checking whether the /sw/bin/mpic++ linker (/sw/bin/mpic++) supports shared libraries... yes
>>> checking dynamic linker characteristics... darwin10.7.4 dyld
>>> checking how to hardcode library paths into programs... immediate
>>> checking if libtool supports shared libraries... yes
>>> checking whether to build shared libraries... no
>>> checking whether to build static libraries... yes
>>> checking for gfortran option to produce PIC... -fno-common
>>> checking if gfortran PIC flag -fno-common works... yes
>>> checking if gfortran static flag -static works... no
>>> checking if gfortran supports -c -o file.o... yes
>>> checking if gfortran supports -c -o file.o... (cached) yes
>>> checking whether the gfortran linker (/sw/bin/mpic++) supports shared libraries... yes
>>> checking dynamic linker characteristics... darwin10.7.4 dyld
>>> checking how to hardcode library paths into programs... immediate
>>> checking if we should install only statically linked executables... no
>>> checking if -Wl,-rpath should be used to link shared libs in nondefault directories... yes
>>> checking make... checking how make searches directories... VPATH=DIR1 DIR2 ...
>>> checking whether make will build with undefined variables... yes
>>> checking for production mode... production
>>> checking for ceil in -lm... yes
>>> checking for ANSI C header files... (cached) yes
>>> checking whether time.h and sys/time.h may both be included... yes
>>> checking for difftime... yes
>>> checking for gettimeofday... yes
>>> checking sys/resource.h usability... yes
>>> checking sys/resource.h presence... yes
>>> checking for sys/resource.h... yes
>>> checking sys/time.h usability... yes
>>> checking sys/time.h presence... yes
>>> checking for sys/time.h... yes
>>> checking for unistd.h... (cached) yes
>>> checking sys/ioctl.h usability... yes
>>> checking sys/ioctl.h presence... yes
>>> checking for sys/ioctl.h... yes
>>> checking for sys/stat.h... (cached) yes
>>> checking sys/socket.h usability... yes
>>> checking sys/socket.h presence... yes
>>> checking for sys/socket.h... yes
>>> checking for sys/types.h... (cached) yes
>>> checking stddef.h usability... yes
>>> checking stddef.h presence... yes
>>> checking for stddef.h... yes
>>> checking setjmp.h usability... yes
>>> checking setjmp.h presence... yes
>>> checking for setjmp.h... yes
>>> checking features.h usability... no
>>> checking features.h presence... no
>>> checking for features.h... no
>>> checking for stdint.h... (cached) yes
>>> checking io.h usability... no
>>> checking io.h presence... no
>>> checking for io.h... no
>>> checking winsock.h usability... no
>>> checking winsock.h presence... no
>>> checking for winsock.h... no
>>> checking sys/timeb.h usability... yes
>>> checking sys/timeb.h presence... yes
>>> checking for sys/timeb.h... yes
>>> checking if configure should try to set up large file support... yes
>>> checking for special C compiler options needed for large files... no
>>> checking for _FILE_OFFSET_BITS value needed for large files... no
>>> checking if large (64-bit) files are supported on this system.... yes
>>> skipping test for lseek64(), fseeko64 , ftello64, ftruncate64() because off64_t is not defined
>>> checking for fseeko... yes
>>> checking for ftello... yes
>>> checking for stat64... yes
>>> checking for fstat64... yes
>>> checking for off_t... yes
>>> checking for size_t... yes
>>> checking for ssize_t... yes
>>> checking for ptrdiff_t... yes
>>> checking whether byte ordering is bigendian... no
>>> checking size of char... 1
>>> checking size of short... 2
>>> checking size of int... 4
>>> checking size of unsigned... 4
>>> checking size of long... 8
>>> checking size of long long... 8
>>> checking size of __int64... 0
>>> checking size of float... 4
>>> checking size of double... 8
>>> checking size of long double... 16
>>> checking size of int8_t... 1
>>> checking size of uint8_t... 1
>>> checking size of int_least8_t... 1
>>> checking size of uint_least8_t... 1
>>> checking size of int_fast8_t... 1
>>> checking size of uint_fast8_t... 1
>>> checking size of int16_t... 2
>>> checking size of uint16_t... 2
>>> checking size of int_least16_t... 2
>>> checking size of uint_least16_t... 2
>>> checking size of int_fast16_t... 2
>>> checking size of uint_fast16_t... 2
>>> checking size of int32_t... 4
>>> checking size of uint32_t... 4
>>> checking size of int_least32_t... 4
>>> checking size of uint_least32_t... 4
>>> checking size of int_fast32_t... 4
>>> checking size of uint_fast32_t... 4
>>> checking size of int64_t... 8
>>> checking size of uint64_t... 8
>>> checking size of int_least64_t... 8
>>> checking size of uint_least64_t... 8
>>> checking size of int_fast64_t... 8
>>> checking size of uint_fast64_t... 8
>>> checking size of size_t... 8
>>> checking size of ssize_t... 8
>>> checking size of ptrdiff_t... 8
>>> checking size of off_t... 8
>>> checking size of off64_t... 0
>>> checking if dev_t is scalar... yes
>>> checking for dmalloc library... suppressed
>>> checking zlib.h usability... yes
>>> checking zlib.h presence... yes
>>> checking for zlib.h... yes
>>> checking for compress2 in -lz... yes
>>> checking for compress2... yes
>>> checking for szlib... suppressed
>>> checking for pthread... suppressed
>>> checking for thread safe support... no
>>> checking for tm_gmtoff in struct tm... yes
>>> checking for __tm_gmtoff in struct tm... no
>>> checking for global timezone variable... yes
>>> checking whether struct tm is in sys/time.h or time.h... time.h
>>> checking for struct tm.tm_zone... yes
>>> checking for struct timezone... yes
>>> checking whether gettimeofday() gives timezone... yes
>>> checking for st_blocks in struct stat... yes
>>> checking for _getvideoconfig... no
>>> checking for gettextinfo... no
>>> checking for GetConsoleScreenBufferInfo... no
>>> checking for _scrsize... no
>>> checking for ioctl... yes
>>> checking for struct videoconfig... no
>>> checking for struct text_info... no
>>> checking for TIOCGWINSZ... yes
>>> checking for TIOCGETD... yes
>>> checking for alarm... yes
>>> checking for BSDgettimeofday... no
>>> checking for fork... yes
>>> checking for frexpf... yes
>>> checking for frexpl... yes
>>> checking for gethostname... yes
>>> checking for getpwuid... yes
>>> checking for getrusage... yes
>>> checking for lstat... yes
>>> checking for rand_r... yes
>>> checking for random... yes
>>> checking for setsysinfo... no
>>> checking for signal... yes
>>> checking for longjmp... yes
>>> checking for setjmp... yes
>>> checking for siglongjmp... yes
>>> checking for sigsetjmp... yes
>>> checking for sigprocmask... yes
>>> checking for snprintf... yes
>>> checking for srandom... yes
>>> checking for strdup... yes
>>> checking for symlink... yes
>>> checking for system... yes
>>> checking for tmpfile... yes
>>> checking for vasprintf... yes
>>> checking for waitpid... yes
>>> checking for vsnprintf... yes
>>> checking if vsnprintf returns correct value... yes
>>> checking if lone colon can be used as an argument... yes
>>> checking for an ANSI C-conforming const... yes
>>> checking for inline... inline
>>> checking for __attribute__ extension... yes
>>> checking for __func__ extension... yes
>>> checking for __FUNCTION__ extension... yes
>>> checking for C99 designated initialization support... yes
>>> checking how to print long long... %ld and %lu
>>> checking Threads support system scope... yes
>>> checking for gpfs... suppressed
>>> checking for debug flags... none
>>> checking whether function stack tracking is enabled... no
>>> checking whether metadata trace file code is enabled... no
>>> checking for API tracing... no
>>> checking for instrumented library... no
>>> checking whether to clear file buffers... yes
>>> checking whether a memory checking tool will be used... no
>>> configure: error: An MPI compiler is being used; --enable-cxx is not allowed
>>> + (( 1 ))
>>> + echo 'BEGIN ERROR'
>>> + echo 'Error while building HDF5. Aborting.'
>>> + echo 'END ERROR'
>>> + exit 1
>>> HDF5 selected, but HDF5_DIR not set. Checking some places...
>>> HDF5 not found
>>> Building HDF5...
>>>
>>> CST error 1:
>>> -> Configuration script for thorn HDF5 returned exit code 1
>>> Error message: 'Error while building HDF5. Aborting.'
>>>
>>> Checking consistency...
>>> Creating Thorn-Flesh bindings...
>>> Creating implementation bindings...
>>> Creating parameter bindings...
>>> Creating variable bindings...
>>> Creating schedule bindings...
>>> Creating function bindings...
>>>
>>>
>>> ------------------------------------------------------
>>> There was 1 error during execution of the CST
>>> This must be corrected before compilation can proceed
>>> ------------------------------------------------------
>>>
>>>
>>>
>>> ------------------------------------------------------
>>> Warnings were generated during execution of the CST
>>> ------------------------------------------------------
>>>
>>>
>>> CST error 1:
>>> -> Configuration script for thorn HDF5 returned exit code 1
>>> Error message: 'Error while building HDF5. Aborting.'
>>>
>>> ------------------------------------------------------
>>>
>>> make[1]: *** [/Users/shawley/Cactus/configs/texmex/config-data/make.thornlist] Error 1
>>> make: *** [texmex] Error 2
>>> provision.local 19>
>>>
>>>
>>>
>>>
>>> _______________________________________________
>>> Users mailing list
>>> Users at einsteintoolkit.org
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>>
>> --
>> Thanks for saving energy!
>> 節電のため、ご協力をお願いいたします。
>> _______________________________________________
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