[Users] New MPI config designation, specifying libs?

[Scott Hawley]

Hi.  Apparently the build system is looking for -lmpi_cxx, which does not
exist on Nautilus. instead it is -lmpi++.
I tried setting MPI_LIBS directly in my options file, but it didn't remove
the reference.   See error at bottom of this message.

% cat ~/options.nautilus.gnu | grep -i MPI
CPPFLAGS = -LMPICH_IGNORE_CXX_SEEK
MPI_DIR = /opt/sgi/mpt/mpt-2.04/
MPI_LIBS = mpi mpi++



The only place this reference seems to be is..
% grep -r mpi_cxx configs/etk/
configs/etk/bindings/Configuration/Capabilities/make.MPI.defn:MPI_LIBS
= mpi mpi_cxx

(it's not in my environment...
% env | /bin/grep mpi
% 
)



How to fix this?
Thanks,
Scott



make etk SILENT=no
...
________________________________________________________________________
Creating cactus_etk in /nics/c/home/hawleys/Cactus/exe from
CactusArchive/ADM EinsteinAnalysis/ADMAnalysis EinsteinBase/ADMBase
EinsteinAnalysis/ADMConstraints EinsteinBase/ADMCoupling
EinsteinBase/ADMMacros AEIThorns/ADMMass AEIThorns/AEILocalInterp
EinsteinAnalysis/AHFinder EinsteinAnalysis/AHFinderDirect
ExternalLibraries/BLAS CactusBase/Boundary EinsteinAnalysis/CalcK
Carpet/Carpet Carpet/CarpetEvolutionMask Carpet/CarpetIOASCII
Carpet/CarpetIOBasic Carpet/CarpetIOHDF5 Carpet/CarpetIOScalar
Carpet/CarpetInterp Carpet/CarpetInterp2 Carpet/CarpetLib
Carpet/CarpetMask Carpet/CarpetReduce Carpet/CarpetRegrid
Carpet/CarpetRegrid2 Carpet/CarpetSlab Carpet/CarpetTracker
CactusBase/CartGrid3D CactusNumerical/Cartoon2D EinsteinBase/Constants
CactusBase/CoordBase EinsteinBase/CoordGauge CactusNumerical/Dissipation
EinsteinInitialData/DistortedBHIVP EinsteinAnalysis/EHFinder
EinsteinBase/EOS_Base EinsteinEOS/EOS_Hybrid EinsteinEOS/EOS_IdealFluid
EinsteinEOS/EOS_Omni EinsteinEOS/EOS_Polytrope
EinsteinExact/EinsteinExact_Test CactusElliptic/EllBase
CactusElliptic/EllSOR EinsteinInitialData/Exact EinsteinAnalysis/Extract
ExternalLibraries/FFTW3 CactusUtils/Formaline CactusBase/Fortran
EinsteinEvolve/GRHydro EinsteinInitialData/GRHydro_InitData
ExternalLibraries/GSL EinsteinExact/GaugeWave
KrancNumericalTools/GenericFD ExternalLibraries/HDF5 CactusConnect/HTTPD
CactusConnect/HTTPDExtra EinsteinBase/HydroBase
EinsteinAnalysis/Hydro_Analysis EinsteinInitialData/Hydro_InitExcision
EinsteinInitialData/IDAnalyticBH EinsteinInitialData/IDAxiBrillBH
EinsteinInitialData/IDAxiOddBrillBH EinsteinInitialData/IDBrillData
EinsteinInitialData/IDConstraintViolate EinsteinInitialData/IDFileADM
EinsteinInitialData/IDLinearWaves CactusWave/IDScalarWave
CactusWave/IDScalarWaveC CactusWave/IDScalarWaveCXX
CactusWave/IDScalarWaveElliptic CactusBase/IOASCII CactusBase/IOBasic
CactusPUGHIO/IOHDF5 CactusPUGHIO/IOHDF5Util CactusIO/IOJpeg
CactusBase/IOUtil CactusBase/InitBase CactusNumerical/InterpToArray
EinsteinExact/KerrSchild ExternalLibraries/LAPACK ExternalLibraries/LORENE
EinsteinEvolve/LegoExcision CactusNumerical/LocalInterp
CactusNumerical/LocalReduce Carpet/LoopControl McLachlan/ML_ADMConstraints
McLachlan/ML_ADMQuantities McLachlan/ML_BSSN McLachlan/ML_BSSN_Helper
McLachlan/ML_BSSN_Test McLachlan/ML_CCZ4 McLachlan/ML_CCZ4_Helper
McLachlan/ML_CCZ4_Test McLachlan/ML_WaveToy ExternalLibraries/MPI
EinsteinInitialData/Meudon_Bin_BH EinsteinInitialData/Meudon_Bin_NS
EinsteinInitialData/Meudon_Mag_NS EinsteinExact/Minkowski
CactusNumerical/MoL EinsteinExact/ModifiedSchwarzschildBL
EinsteinAnalysis/Multipole CactusUtils/NaNChecker EinsteinEvolve/NewRad
CactusUtils/Nice EinsteinInitialData/NoExcision CactusUtils/NoMPI
CactusNumerical/Noise CactusNumerical/Norms PITTNullCode/NullConstr
PITTNullCode/NullDecomp PITTNullCode/NullEvolve PITTNullCode/NullExact
PITTNullCode/NullGrid PITTNullCode/NullInterp PITTNullCode/NullNews
PITTNullCode/NullPsiInt PITTNullCode/NullSHRExtract PITTNullCode/NullVars
ExternalLibraries/OpenSSL CactusPUGH/PUGH CactusPUGH/PUGHInterp
CactusPUGH/PUGHReduce CactusPUGH/PUGHSlab CactusNumerical/Periodic
AEIThorns/PunctureTracker LSUThorns/QuasiLocalMeasures
CactusNumerical/ReflectionSymmetry EinsteinInitialData/RotatingDBHIVP
CactusNumerical/RotatingSymmetry180 CactusNumerical/RotatingSymmetry90
EinsteinUtils/SetMask_SphericalSurface EinsteinExact/ShiftedGaugeWave
CactusNumerical/Slab CactusNumerical/SlabTest CactusConnect/Socket
CactusNumerical/SpaceMask PITTNullCode/SphericalHarmonicDecomp
PITTNullCode/SphericalHarmonicRecon CactusNumerical/SphericalSurface
EinsteinBase/StaticConformal LSUThorns/SummationByParts CactusBase/SymBase
AEIThorns/SystemStatistics TAT/TATelliptic EinsteinUtils/TGRtensor
EinsteinInitialData/TOVSolver CactusUtils/TerminationTrigger
CactusTest/TestArrays CactusTest/TestComplex CactusTest/TestCoordinates
CactusTest/TestFortranDependencies1 CactusTest/TestFortranDependencies2
CactusTest/TestFpointerNULL CactusTest/TestFreeF90
CactusTest/TestGlobalReduce CactusTest/TestInclude1
CactusTest/TestInclude2 CactusTest/TestLocalReduce CactusTest/TestLoop
CactusTest/TestPar CactusTest/TestReduce CactusTest/TestSchedule
CactusTest/TestStrings CactusTest/TestTable CactusTest/TestTimers
CactusTest/TestTypes CactusBase/Time CactusUtils/TimerReport
EinsteinBase/TmunuBase EinsteinInitialData/TwoPunctures
EinsteinExact/Vaidya2 LSUThorns/Vectors CactusWave/WaveBinarySource
CactusWave/WaveToyC CactusWave/WaveToyCXX CactusWave/WaveToyExtra
CactusWave/WaveToyF77 CactusWave/WaveToyF90 CactusWave/WaveToyFreeF90
EinsteinAnalysis/WeylScal4 ExternalLibraries/hwloc
ExternalLibraries/libjpeg ExternalLibraries/zlib
datetime=`/bin/date +'%Y-%m-%dT%H:%M:%S%z' 2>&1` ; \
	if [ $? != 0 ]; then datetime=`/bin/date` ; fi ; \
	gcc -std=gnu99 -m64 -g -O0 -O3 -fopenmp
-DCCTK_COMPILE_DATETIME="$datetime" -c -o
"/nics/c/home/hawleys/Cactus/configs/etk/datestamp.o"
-I"/nics/c/home/hawleys/Cactus/src/include"
-I"/nics/c/home/hawleys/Cactus/configs/etk/config-data"
"/nics/c/home/hawleys/Cactus/src/datestamp.c"
if [ ! -d /nics/c/home/hawleys/Cactus/exe ]; then mkdir -p
/nics/c/home/hawleys/Cactus/exe ; fi
g++ -o "/nics/c/home/hawleys/Cactus/exe/cactus_etk"
-LMPICH_IGNORE_CXX_SEEK -g -DCARPET_DEBUG  -fopenmp  -O2 -m64 -std=gnu++0x
-D__builtin_isinf=std::isinf -D__builtin_isnan=std::isnan -g -O0 -O3
-fopenmp    "/nics/c/home/hawleys/Cactus/configs/etk/datestamp.o"
-L/nics/c/home/hawleys/Cactus/configs/etk/lib -lthorn_Cactus
-lthorn_CactusBindings -lthorn_CarpetEvolutionMask -lthorn_IOHDF5
-lthorn_IOHDF5Util -lthorn_CarpetIOScalar -lthorn_ML_WaveToy
-lthorn_Meudon_Mag_NS -lthorn_HTTPDExtra -lthorn_HTTPD
-lthorn_RotatingSymmetry90 -lthorn_NoExcision -lthorn_Hydro_InitExcision
-lthorn_ML_BSSN_Helper -lthorn_GaugeWave -lthorn_NullPsiInt
-lthorn_PUGHInterp -lthorn_Cartoon2D -lthorn_SetMask_SphericalSurface
-lthorn_EHFinder -lthorn_EOS_IdealFluid -lthorn_ModifiedSchwarzschildBL
-lthorn_Multipole -lthorn_CarpetTracker -lthorn_SphericalHarmonicRecon
-lthorn_QuasiLocalMeasures -lthorn_TGRtensor -lthorn_Exact
-lthorn_Periodic -lthorn_IOJpeg -lthorn_CarpetRegrid
-lthorn_TestGlobalReduce -lthorn_CarpetInterp2 -lthorn_Vaidya2
-lthorn_GRHydro_InitData -lthorn_TestLoop -lthorn_LegoExcision
-lthorn_ADMMass -lthorn_ADM -lthorn_CarpetSlab -lthorn_NoMPI
-lthorn_PunctureTracker -lthorn_CarpetRegrid2 -lthorn_IDScalarWaveElliptic
-lthorn_IDScalarWaveCXX -lthorn_IDScalarWaveC -lthorn_IDScalarWave
-lthorn_ML_ADMQuantities -lthorn_ML_BSSN -lthorn_WaveToyExtra
-lthorn_CarpetMask -lthorn_ML_CCZ4_Helper -lthorn_ML_CCZ4
-lthorn_AHFinderDirect -lthorn_Meudon_Bin_BH -lthorn_ADMConstraints
-lthorn_ML_ADMConstraints -lthorn_PUGHSlab
-lthorn_TestFortranDependencies1 -lthorn_TwoPunctures -lthorn_CalcK
-lthorn_IOBasic -lthorn_NullExact -lthorn_NullConstr -lthorn_NullNews
-lthorn_CarpetInterp -lthorn_IDBrillData -lthorn_Extract
-lthorn_WaveBinarySource -lthorn_WaveToyFreeF90 -lthorn_WaveToyF90
-lthorn_WaveToyF77 -lthorn_WaveToyCXX -lthorn_WaveToyC
-lthorn_IDAxiOddBrillBH -lthorn_CarpetIOBasic -lthorn_CarpetIOASCII
-lthorn_Minkowski -lthorn_SlabTest -lthorn_Dissipation
-lthorn_SphericalSurface -lthorn_EOS_Hybrid -lthorn_EOS_Polytrope
-lthorn_DistortedBHIVP -lthorn_Meudon_Bin_NS -lthorn_LORENE -lthorn_LAPACK
-lthorn_IDAxiBrillBH -lthorn_EllSOR -lthorn_NewRad -lthorn_IOASCII
-lthorn_NullSHRExtract -lthorn_NullEvolve -lthorn_NullInterp
-lthorn_NullDecomp -lthorn_NullGrid -lthorn_AHFinder
-lthorn_RotatingDBHIVP -lthorn_SphericalHarmonicDecomp -lthorn_WeylScal4
-lthorn_IDConstraintViolate -lthorn_TOVSolver -lthorn_GRHydro
-lthorn_TmunuBase -lthorn_SpaceMask -lthorn_EOS_Omni -lthorn_IDAnalyticBH
-lthorn_ShiftedGaugeWave -lthorn_CarpetIOHDF5 -lthorn_HDF5
-lthorn_NaNChecker -lthorn_PUGHReduce -lthorn_PUGH -lthorn_CarpetReduce
-lthorn_Carpet -lthorn_CarpetLib -lthorn_ADMAnalysis -lthorn_zlib
-lthorn_libjpeg -lthorn_hwloc -lthorn_Time -lthorn_TestTypes
-lthorn_TestTimers -lthorn_TestTable -lthorn_TestStrings
-lthorn_TestSchedule -lthorn_TestReduce -lthorn_TestPar
-lthorn_TestLocalReduce -lthorn_TestInclude2 -lthorn_TestInclude1
-lthorn_TestFreeF90 -lthorn_TestFpointerNULL
-lthorn_TestFortranDependencies2 -lthorn_TestCoordinates
-lthorn_TestComplex -lthorn_TestArrays -lthorn_TerminationTrigger
-lthorn_TATelliptic -lthorn_SystemStatistics -lthorn_SymBase
-lthorn_SummationByParts -lthorn_Socket -lthorn_ReflectionSymmetry
-lthorn_OpenSSL -lthorn_NullVars -lthorn_Norms -lthorn_Nice -lthorn_MoL
-lthorn_ML_CCZ4_Test -lthorn_ML_BSSN_Test -lthorn_LocalReduce
-lthorn_LocalInterp -lthorn_InterpToArray -lthorn_Fortran -lthorn_FFTW3
-lthorn_EllBase -lthorn_EinsteinExact_Test -lthorn_EOS_Base
-lthorn_CoordGauge -lthorn_Constants -lthorn_BLAS -lthorn_AEILocalInterp
-lthorn_ADMMacros -lthorn_ADMCoupling -lthorn_Formaline
-lthorn_RotatingSymmetry180 -lthorn_Slab -lthorn_Hydro_Analysis
-lthorn_HydroBase -lthorn_InitBase -lthorn_KerrSchild -lthorn_LoopControl
-lthorn_Vectors -lthorn_GSL -lthorn_GenericFD -lthorn_IDLinearWaves
-lthorn_IDFileADM -lthorn_IOUtil -lthorn_StaticConformal -lthorn_ADMBase
-lthorn_Boundary -lthorn_TimerReport -lthorn_MPI -lthorn_Noise
-lthorn_CartGrid3D -lthorn_CoordBase -lthorn_Cactus -lthorn_CactusBindings
-lthorn_Formaline-cactus-source -L/usr/lib/
-L/nics/c/home/hawleys/Cactus/configs/etk/scratch/external/hwloc/lib
-L/opt/sgi/mpt/mpt-2.04//lib
-L/nics/c/home/hawleys/Cactus/configs/etk/scratch/external/LORENE/Lib
-L/usr/lib/ 
-L/nics/c/home/hawleys/Cactus/configs/etk/scratch/external/HDF5/lib
-L/sw/analysis/gsl/1.14/sles11.1_gnu4.3.4/lib
-L/sw/analysis/fftw/3.3/sles11.1_gnu4.3.4/lib
-L/sw/analysis/gotoblas2/2.1.13/sles11.1_gnu4.3.4/
-L/usr/lib64/gcc/x86_64-suse-linux/4.3 -Wl,-rpath,/usr/lib/
-Wl,-rpath,/nics/c/home/hawleys/Cactus/configs/etk/scratch/external/hwloc/l
ib -Wl,-rpath,/opt/sgi/mpt/mpt-2.04//lib
-Wl,-rpath,/nics/c/home/hawleys/Cactus/configs/etk/scratch/external/LORENE/
Lib -Wl,-rpath,/usr/lib/
-Wl,-rpath,/nics/c/home/hawleys/Cactus/configs/etk/scratch/external/HDF5/li
b -Wl,-rpath,/sw/analysis/gsl/1.14/sles11.1_gnu4.3.4/lib
-Wl,-rpath,/sw/analysis/fftw/3.3/sles11.1_gnu4.3.4/lib
-Wl,-rpath,/sw/analysis/gotoblas2/2.1.13/sles11.1_gnu4.3.4/
-Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/4.3 -llapack -lpthread -lz
-ljpeg -lhwloc -lmpi -lmpi_cxx -llorene_export -llorene -llorenef77
-llapack -lhdf5_hl_cpp -lhdf5_cpp -lhdf5hl_fortran -lhdf5_fortran
-lhdf5_hl -lhdf5 -lz -lm -lgsl -lgslcblas -lm -lfftw3 -lblas -lcrypt -ldl
-lgfortran
/usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../x86_64-suse-linux/bin/ld:
skipping incompatible /usr/lib//libpthread.so when searching for -lpthread
/usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../x86_64-suse-linux/bin/ld:
skipping incompatible /usr/lib//libpthread.a when searching for -lpthread
/usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../x86_64-suse-linux/bin/ld:
skipping incompatible /usr/lib//libpthread.so when searching for -lpthread
/usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../x86_64-suse-linux/bin/ld:
skipping incompatible /usr/lib//libpthread.a when searching for -lpthread
/usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../x86_64-suse-linux/bin/ld:
cannot find -lmpi_cxx
collect2: ld returned 1 exit status
make[1]: *** [/nics/c/home/hawleys/Cactus/exe/cactus_etk] Error 1
make[1]: Leaving directory `/nics/c/home/hawleys/Cactus'
make: *** [etk] Error 2