[Users] Issues getting Einstein Toolkit built on Scientific Linux 6

[Erik Schnetter]

Joe

You are probably using a parallel make that runs several commands at once.
The failing command is thus not always the last one before the error
message.

Could you show us a bit more context, e.g. the twenty lines before the
error message?

-erik




On Thu, Dec 13, 2012 at 8:04 PM, Joe Hellmers <jhellmer at rohan.sdsu.edu>wrote:

> I installed gsl using yum as indicated below.
> (Note: I didn't modify sl6.cfg at all)
>
>   I'm not getting the error I was, but then I got
>
> Creating hwloc-gather-topology.1 man page...
>   CCLD     lstopo-no-graphics
>   CCLD     hwloc-assembler
> /usr/bin/ld:uca/bin/ld: cannot find -lzc
> collect2: ld returned 1 exit status
> make[3]: *** [lstopo-no-graphics] Error 1
> make[3]: *** Waiting for unfinished jobs....
> make[3]: *** [hwloc-assembler] Error 1
> make[2]: *** [all-recursive] Error 1
>
> CST error 1:
>   -> Configuration script for thorn HWLOC returned exit code 1
>      (no error message)
>
> hwloc selected, but HWLOC_DIR not set. Checking some places...
>
> I was able to get past that by installing hwloc-devel using yum as well.
>
> Now I'm getting some sort of complile error
>
> COMPILING
> /home/hellmersjl/EinsteinToolkit/Cactus/arrangements/EinsteinInitialData/Hydro_InitExcision/src/Hydro_InitExcision.c
> make[3]: *** [announce.cc.o] Error 1
> make[2]: *** [make.checked] Error 2
> make[1]: ***
> [/home/hellmersjl/EinsteinToolkit/Cactus/configs/sim/lib/libthorn_Formaline.a]
> Error 2
> make[1]: *** Waiting for unfinished jobs....
> COMPILING
> /home/hellmersjl/EinsteinToolkit/Cactus/configs/sim/bindings/build/Hydro_InitExcision/cctk_ThornBindings.c
> Creating
> /home/hellmersjl/EinsteinToolkit/Cactus/configs/sim/lib/libthorn_Hydro_InitExcision.a
> make: *** [sim] Error 2
>
> Not sure what to try next.
>
> Joe
>
>
> On Dec 12, 2012, at 8:04 PM, Barry Wardell wrote:
>
> On Wed, Dec 12, 2012 at 10:10 AM, Erik Schnetter <schnetter at cct.lsu.edu>wrote:
>
>> The difference here is that HDF5 is expected to be installed manually,
>> which is much more work than e.g. "sudo apt-get install gsl".
>>
>> The starting point of the discussion was that there was another person
>> using SL6, and problems ensued because GSL was expected to be installed,
>> but this was not documented in the option list.
>>
>
> OK, I have made the SL6 optionlist as generic as possible and included the
> relevant 'yum install gsl-devel' comments. If there are packages which I
> forgot to mention, please let me know.
>
>
>


-- 
Erik Schnetter <schnetter at cct.lsu.edu>
http://www.perimeterinstitute.ca/personal/eschnetter/
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