[Users] help with configuration on local cluster?

Babiuc-Hamilton, Maria babiuc at marshall.edu
Fri Jun 1 14:26:58 CDT 2012


Hello,

I need help with configuring and compiling Cactus on BigGreen, a local cluster at Marshall University.
uname -a
Linux biggreen.marshall.edu 2.6.32-71.7.1.el6.x86_64 #1 SMP Mon Jun 27 07:24:50 BST 2011 x86_64 x86_64 x86_64 GNU/Linux

Other specifications are:  276 central processing unit cores, 552 gigabytes of memory, 10 terabytes of storage, 8 NVidia Tesla graphics processing units with 448 cores.

I am using a generic configuration:
CPP = cpp
FPP = cpp
CC  = gcc
CXX = g++
F77 = gfortran
F90 = gfortran

FPPFLAGS = -traditional
CFLAGS   = -std=gnu99


OPTIMISE           = yes
CPP_OPTIMISE_FLAGS =
C_OPTIMISE_FLAGS   = -O2
CXX_OPTIMISE_FLAGS = -O2

OPENMP           = yes
CPP_OPENMP_FLAGS = -openmp
FPP_OPENMP_FLAGS = -fopenmp
C_OPENMP_FLAGS   = -openmp
CXX_OPENMP_FLAGS = -openmp
F77_OPENMP_FLAGS = -openmp
F90_OPENMP_FLAGS = -openmp

WARN           = yes
CPP_WARN_FLAGS = -Wall
C_WARN_FLAGS   = -Wall
CXX_WARN_FLAGS = -Wall

#enable MPI
MPI = OpenMPI
OPENMPI_DIR = /opt/openmpi
#OPENMPI_DIR = openmpi/1.4.3

HDF5_DIR=BUILD


The errors I'm getting are:
------------------------------------------------------
There were 4 errors during execution of the CST
These must be corrected before compilation can proceed
------------------------------------------------------



------------------------------------------------------
Warnings were generated during execution of the CST
------------------------------------------------------


CST error 1:
  -> Configuration script for thorn FFTW3 returned exit code 1
     (no error message)


CST error 2:
  -> Configuration script for thorn GSL returned exit code 1
     (no error message)


CST error 3:
  -> Configuration script for thorn LORENE returned exit code 1
     (no error message)


CST error 4:
  -> Configuration script for thorn HDF5 returned exit code 1
     (no error message)



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