[Users] ETK in NERSC machines (Hopper/Carver) does not work properly

Jose Fiestas Iquira jafiestas at lbl.gov
Sat Mar 10 14:58:47 CST 2012


Hi,
I syncronized as well from Queenbee to Hopper/Carver getting the same
errors. I will try to set bash in NIM, loggin again and start from scratch.
Will report.
Thanks,
Jose


On Sat, Mar 10, 2012 at 8:20 AM, Hemant Shukla <hshukla at lbl.gov> wrote:

> Hi Erik,
>
> I did just that. I checked out a brand new set of ETK on Carver and got
> the same errors that were emailed yesterday. Is appears that LSUThorns do
> not exist in the repository anymore. Or at least they are not getting
> checked out.
>
> - Hemant
>
>
>
>
> On Sat, Mar 10, 2012 at 4:05 AM, Erik Schnetter <schnetter at cct.lsu.edu>wrote:
>
>> Jose
>>
>> This is worrysome.
>>
>> Can you check out the Einstein Toolkit on another machine, e.g. your
>> local laptop or workstation? If so, you are fine; you can then use
>> Simfactory to copy your source tree via "sim sync hopper". (In fact,
>> this is how I work -- I have only a single "real" checkout on my
>> laptop, and I then copy this source tree to all other machines.)
>>
>> -erik
>>
>> On Fri, Mar 9, 2012 at 7:41 PM, Jose Fiestas Iquira <jafiestas at lbl.gov>
>> wrote:
>> > Dear colleagues,
>> >
>> > I was trying the last days to install an own application based on ETK in
>> > NERSC machines (Hopper/Carver), having some problems during the
>> compilation.
>> > Before trying to find the real problem, I started from scratch and
>> realize I
>> > can not even checkout ETK properly.
>> > Does somebody tried it in machines different as LONI machines since the
>> last
>> > release? Would appreciate any experience about it.
>> > Below my steps:
>> >
>> >
>> > 1. GetComponents <Einstein Toolkit>  (release version)
>> > curl -O https://raw.github.com/gridaphobe/CRL/master/GetComponents
>> > ..............................
>> > 183 components checked out.
>> >   0 components updated.
>> >
>> >   Unable to process simfactory2
>> >   Unable to process LSUThorns/QuasiLocalMeasures
>> >   Unable to process LSUThorns/SummationByParts
>> >   Unable to process LSUThorns/Vectors
>> >
>> > Summary of Warnings:
>> >
>> > Could not checkout module simfactory2
>> >
>> >
>> > Could not checkout module LSUThorns/QuasiLocalMeasures
>> >
>> >
>> > Could not checkout module LSUThorns/SummationByParts
>> >
>> >
>> > Could not checkout module LSUThorns/Vectors
>> >
>> >
>> >   Time Elapsed: 26 minutes, 19 seconds
>> > ..............................................
>> >
>> > 2. GetComponent  <WaveDemo>
>> > ./GetComponents
>> > http://cactuscode.org/documentation/tutorials/wavetoydemo/WaveDemo.th
>> >
>> > Went OK
>> >
>> > 3.  cd Cactus
>> > gmake WaveDemo-config
>> > gmake WaveDemo
>> >
>> >
>> > ------------------------------------------------------
>> > Warnings were generated during execution of the CST
>> > ------------------------------------------------------
>> >
>> >
>> > CST error 1:
>> >   -> Duplicate thornname LocalReduce in CactusBase and CactusNumerical
>> >
>> >
>> > CST error 2:
>> >   -> Thorn 'CarpetLib' requires the capability 'Vectors'.
>> >      Please add a thorn that provides 'Vectors' to your ThornList or
>> remove
>> > 'CarpetLib' from it !
>> >
>> >
>> > CST error 3:
>> >   -> Thorn 'ML_BSSN' requires the capability 'Vectors'.
>> >      Please add a thorn that provides 'Vectors' to your ThornList or
>> remove
>> > 'ML_BSSN' from it !
>> >
>> >
>> > CST error 4:
>> >   -> Thorn 'ML_BSSN_O2' requires the capability 'Vectors'.
>> >      Please add a thorn that provides 'Vectors' to your ThornList or
>> remove
>> > 'ML_BSSN_O2' from it !
>> >
>> >
>> > CST error 5:
>> >   -> ID_BIN_BH (thorn Meudon_Bin_BH) inherits from SummationByParts
>> >      No thorn in your current ThornList implements SummationByParts
>> >      Either remove Meudon_Bin_BH, or add a thorn to your
>> >       ThornList implementing SummationByParts
>> >      Available thorns in arrangements directory implementing
>> > SummationByParts:
>> >         LSUThorns/SummationByParts
>> >
>> >
>> > CST error 6:
>> >   -> MEUDON_BIN_NS (thorn Meudon_Bin_NS) inherits from SummationByParts
>> >      No thorn in your current ThornList implements SummationByParts
>> >      Either remove Meudon_Bin_NS, or add a thorn to your
>> >       ThornList implementing SummationByParts
>> >      Available thorns in arrangements directory implementing
>> > SummationByParts:
>> >         LSUThorns/SummationByParts
>> >
>> >
>> > CST error 7:
>> >   -> Configuration script for thorn BLAS returned exit code 1
>> >      Error message: 'Error while building BLAS. Aborting.'
>> >
>> >
>> > CST error 8:
>> >   -> Configuration script for thorn LAPACK returned exit code 1
>> >      Error message: 'Error while building LAPACK. Aborting.'
>> >
>> > ------------------------------------------------------
>> >
>> > gmake[1]: ***
>> >
>> [/project/projectdirs/snfactry/hshukla/CACTUS/Cactus/configs/WaveDemo/config-data/make.thornlist]
>> > Error 1
>> > gmake: *** [WaveDemo] Error 2
>> >
>> >
>> > 4.  Copied LSUThorns by hand and repeated step 3 and got the same
>> errors.
>> >
>> > 183 components checked out.
>> >   0 components updated.
>> >
>> >   Unable to process simfactory2
>> >   Unable to process LSUThorns/QuasiLocalMeasures
>> >   Unable to process LSUThorns/SummationByParts
>> >   Unable to process LSUThorns/Vectors
>> >
>> > Summary of Warnings:
>> >
>> > Could not checkout module simfactory2
>> >
>> >
>> > Could not checkout module LSUThorns/QuasiLocalMeasures
>> >
>> >
>> > Could not checkout module LSUThorns/SummationByParts
>> >
>> >
>> > Could not checkout module LSUThorns/Vectors
>> >
>> >
>> >   Time Elapsed: 26 minutes, 19 seconds
>> >
>> > Best,
>> > Jose
>> >
>> > _______________________________________________
>> > Users mailing list
>> > Users at einsteintoolkit.org
>> > http://lists.einsteintoolkit.org/mailman/listinfo/users
>> >
>>
>>
>>
>> --
>> Erik Schnetter <schnetter at cct.lsu.edu>
>> http://www.perimeterinstitute.ca/personal/eschnetter/
>>
>
>
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