[Users] help/advice in getting optionlist working
Comer Duncan
comer.duncan at gmail.com
Sat Sep 1 13:32:47 CDT 2012
Hi,
Having gotten einsteintoolkit built on my local macbook, I have decided to
try to get things built on the Ohio Supercomputer Center's front end. I
have taken one of the config files for ranger and have used it as a base
from which I made some changes with particular attention to the locations
of needed things on the OSC system. I have tried the following while in
the Cactus directory:
./simfactory/bin/sim setup
which did complete with a basic setup (had to do this twice as I logged
onto the OSC frontend two separate times and got two different machines,
which is not surprising I guess).
While in the Cactus directory:
./simfactory/bin/sim build --optionlist=oscoptionlist
--thornlist=thornlists/einsteintoolkit.th >& attempt5.9.1.2012.out &
where oscoptionlist is the edited version of the ranger optionlist I used.
I am attaching this optionlist. At the end of the output file I see the
following:
HDF5: Installing checker...
/usr/bin/install -c h5check
'/nfs/05/bgs001/Cactus/configs/sim/scratch/external/HDF5/bin'
~/Cactus/configs/sim/scratch
HDF5: Cleaning up...
HDF5: Done.
HDF5 selected, but HDF5_DIR not set. Checking some places...
HDF5 not found
Using bundled HDF5...
Building HDF5
Checking consistency...
Creating Thorn-Flesh bindings...
Creating implementation bindings...
Creating parameter bindings...
Creating variable bindings...
Creating schedule bindings...
Creating function bindings...
CST finished.
/nfs/05/bgs001/Cactus/arrangements/Carpet/CarpetLib/src/make.configuration.defn:5:
*** Configuration error: The Carpet thorns require MPI. Please configure
with MPI, or remove the Carpet thorns from the ThornList.. Stop.
make: *** [sim] Error 2
So, the system I run on uses module and the loaded modules are:
-bash-4.1$ module list
Currently Loaded Modules:
1) torque/2.5.12 3) modules/1.0 5) mkl/10.3.0 7) fftw3/3.3
2) moab/6.1.5 4) intel/12.1.4.319 6) mvapich2/1.7
I believe/think that the optionlist file reflects the loaded mvapich libs,
but maybe I have missed something...
Can you please help me get over this hurdle?
Thanks for your help.
Comer
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