[Users] reported vs real memory usage + CarpetRegrid2?

Kelly, Bernard J. (GSFC-660.0)[UNIVERSITY OF MARYLAND BALTIMORE COUNTY] bernard.j.kelly at nasa.gov
Tue Sep 10 11:34:37 CDT 2013


Hi.

I'm running a vacuum BHB evolution with a larger-than-usual set of inner
refinement regions (levels 8, 9, 10 11 have radii of 12M, 8M, 6M, and 4M,
respectively)  and consequently the memory usage is a bit higher than
normal. But I'm finding that it jumps up almost 100% after the first
regridding, and stays there.

My diagnostic for this is the result of top on each of the nodes (via
"qtop.pl", a script on the machine I'm using). Sampled before the first
regridding, it shows each core using ~ 1.5% of the node's total memory,
while after regridding, it's more like 2.9% (these are Sandy Bridge nodes,
with 16 available cores).

However, the periodic output message from Carpet reporting the Grid
structure etc. shows regions only marginally larger than before, and ---
crucially for me --- has a marginally larger "Total required memory" (164
GB -> 167 GB, for instance).

So (a) what's using the extra memory, and (b) why isn't Carpet reporting
it? How seriously should I be taking that "Total required memory" message?

I see this with executables generated from both the last (ET_2012_11) and
current (ET_2013_05) stable releases, BTW. I'm attaching the current
parameter file and SCROUT from a run.

Thanks,

Bernard

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