[Users] Any 64-bit issues I should be aware of?

Ian Smith the.pond at dsl.pipex.com
Wed Aug 20 11:17:10 CDT 2014


Hi again list,

I've just done another install onto my 64-bit Ubuntu 14.04 machine (the 
32-bit Debian one is running now), and when I submit a job I get this 
output:

$ ./simfactory/bin/sim show-output --follow static_tov
Simulation name: static_tov
================================================================================
The job's Formaline output is:
================================================================================
(file does not exist)
================================================================================
The job's stdout is:
================================================================================
Simulation name: static_tov
Running simulation static_tov
Preparing:
Checking:
/home/ian/simulations/static_tov/output-0001-active
bonsai
Wed Aug 20 17:10:06 BST 2014
Environment:
Starting:
INFO (Cactus): Increasing logging level from 0 to 3
Wed Aug 20 17:10:07 BST 2014
Simfactory Done at date: 0

================================================================================
The job's stderr is:
================================================================================
+ set -e
+ cd /home/ian/simulations/static_tov/output-0001-active
+ echo Checking:
+ pwd
+ hostname
+ date
+ echo Environment:
+ export GMON_OUT_PREFIX=gmon.out
+ GMON_OUT_PREFIX=gmon.out
+ export OMP_NUM_THREADS=4
+ OMP_NUM_THREADS=4
+ env
+ echo Starting:
++ date +%s
+ export CACTUS_STARTTIME=1408551006
+ CACTUS_STARTTIME=1408551006
+ mpirun -np 1 
/home/ian/simulations/static_tov/SIMFACTORY/exe/cactus_sim -L 3 
/home/ian/simulations/static_tov/output-0001/static_tov_small.par
[bonsai:02183] *** Process received signal ***
[bonsai:02183] Signal: Segmentation fault (11)
[bonsai:02183] Signal code: Address not mapped (1)
[bonsai:02183] Failing at address: 0x44000098
[bonsai:02183] [ 0] /lib/x86_64-linux-gnu/libpthread.so.0(+0x10340) 
[0x7fefca300340]
[bonsai:02183] [ 1] /usr/lib/libmpich.so.10(PMPI_Comm_rank+0x4b) 
[0x7fefc800d63b]
[bonsai:02183] [ 2] 
/home/ian/simulations/static_tov/SIMFACTORY/exe/cactus_sim(CactusDefaultMyProc+0x6f) 
[0xc2951f]
[bonsai:02183] [ 3] 
/home/ian/simulations/static_tov/SIMFACTORY/exe/cactus_sim(CCTKi_CommandLineFinished+0x40) 
[0xc16380]
[bonsai:02183] [ 4] 
/home/ian/simulations/static_tov/SIMFACTORY/exe/cactus_sim(CCTKi_ProcessCommandLine+0x204) 
[0xc00744]
[bonsai:02183] [ 5] 
/home/ian/simulations/static_tov/SIMFACTORY/exe/cactus_sim(CCTKi_InitialiseCactus+0x3c) 
[0xbfd8ec]
[bonsai:02183] [ 6] 
/home/ian/simulations/static_tov/SIMFACTORY/exe/cactus_sim(main+0x1e) 
[0xbf542e]
[bonsai:02183] [ 7] 
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf5) [0x7fefc6f83ec5]
[bonsai:02183] [ 8] 
/home/ian/simulations/static_tov/SIMFACTORY/exe/cactus_sim() [0xbfd62c]
[bonsai:02183] *** End of error message ***
--------------------------------------------------------------------------
mpirun noticed that process rank 0 with PID 2183 on node bonsai exited 
on signal 11 (Segmentation fault).
--------------------------------------------------------------------------

================================================================================

anyone else encountered or dealt with this?

Cheers,

Ian.


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