[Users] CarpetIOHDF5 to S5 converter for yt

[Roland Haas]

Hello Erik, Jonah,

this failed for me when calculating the active regions with:

Calculating active regions...
  discretization: iteration.0000350208-timelevel.0-map.000-level.00
    region: {([0,0,0]:[89,89,50])}
terminate called after throwing an instance of 'std::out_of_range'
  what():  vector::_M_range_check: __n (which is 0) >= this->size() (which is 0)
Aborted (core dumped)

The code that generated the HDF5 is the 2016_05 CarpetIOHDF5 3d output code for vertex centering and with mesh refinement and Llama. 

Is any of those (not master code, Llama?) likely to cause this?

Yours,
Roland

> Roland
> 
> Yes, such a converter exists; it is part of the SimulationIO package <
> https://github.com/eschnett/SimulationIO>, and is called  
> "sio-convert-carpet-output". It should be built by the default makefile
> target.
> 
> You call it as "./sio-convert-carpet-output [--copy|--extlink]? <output
> file name> {<input file name>}*". There is one output file, and there can
> be multiple input files (e.g. one for each process). The "copy" option
> copies datasets, the "extlink" option creates external links to the
> original HDF5 files. The latter is faster and creates smaller files, but
> you obviously need to keep the originals around, and need to preserve their
> path (either their relative or absolute path, depending on what you
> specified on the command line).
> 
> I believe one of these two options is currently broken in the development
> version, sorry about this. I don't recall which.
> 
> -erik
> 
> 
> On Fri, Sep 30, 2016 at 5:01 PM, Roland Haas <rhaas at illinois.edu> wrote:
> 
> > Hello Jonah, Einstein Toolkit users,
> >
> > I think you were working on a plugin to read S5 files into yt, right?
> > Do you also have a converter tool to convert CarpetIOHDF5 3d output
> > files (vertex centered, mesh refined) to S5 files? If only cell
> > centering is supported this is also fine as or this project a slight
> > inaccuracy does not matter.
> >
> > I would be working with Nathan Goldbaum locally to read them into yt so
> > once I have them in that format I will hopefully be home free.
> >
> > Yours,
> > Roland
> >
> > --
> > My email is as private as my paper mail. I therefore support encrypting
> > and signing email messages. Get my PGP key from http://keys.gnupg.net.
> >
> > _______________________________________________
> > Users mailing list
> > Users at einsteintoolkit.org
> > http://lists.einsteintoolkit.org/mailman/listinfo/users
> >
> >  
> 
> 



-- 
My email is as private as my paper mail. I therefore support encrypting
and signing email messages. Get my PGP key from http://keys.gnupg.net.
-------------- next part --------------
A non-text attachment was scrubbed...
Name: not available
Type: application/pgp-signature
Size: 163 bytes
Desc: OpenPGP digital signature
Url : http://lists.einsteintoolkit.org/pipermail/users/attachments/20161005/4caaf398/attachment.bin