[Users] Problem with compiling Einstein Toolkit on Cray system

L.S. Oswald lo280 at cam.ac.uk
Tue Sep 13 10:02:09 CDT 2016


In fact that's what I tried originally, but I realised the commands only 
work if you're compiling on Queen Bee, not any other supercomputer. 
Google tells me that the Queen Bee supercomputer has been retired, so I 
wouldn't be able to obtain an account on it in any case.

Lucy

On 2016-09-12 4:33 pm, Erik Schnetter wrote:
> Lucy
> 
> Have you tried using the Einstein Toolkit on Queen Bee, as suggested
> here <https://docs.einsteintoolkit.org/et-docs/Tutorial_for_New_Users
> [4]>?
> 
> -erik
> 
> On Tue, Sep 6, 2016 at 11:56 AM, L.S. Oswald <lo280 at cam.ac.uk> wrote:
> 
>> Dear Erik
>> 
>> In general I've been using the commands at
>> 
> https://docs.einsteintoolkit.org/et-docs/Simplified_Tutorial_for_New_Users
>> [1]. I have tried configuring with the debian.cfg file and also
>> attempted creating my own configuration file. Moving onto a
>> different computer solved my MPI issue but produced a new error,
>> which I've written about in my reply to Rahul. I'm afraid I don't
>> know what type of computer I'm using now but I should be able to
>> find out tomorrow.
>> 
>> Hopefully my other email gives an overview of my latest problem. I
>> attach the full log of the output received when building the
>> toolkit.
>> 
>> Many thanks for your help,
>> 
>> Lucy
>> 
>> On 2016-09-06 5:41 pm, Erik Schnetter wrote:
>> 
>> Lucy
>> 
>> The Simulation Factory has several example option lists for Cray
>> systems; look e.g. at bluewaters or edison. I don't recommend
>> changing
>> the "config-info" file, since this file will be overwritten.
>> Instead,
>> you can set such options in your option list.
>> 
>> If you need more help, then we'll need more details: What kind of
>> Cray
>> system is this? What options did you pass when you configured the
>> Einstein Toolkit? What output did you receive while configuring?
>> etc.
>> 
>> -erik
>> 
>> On Mon, Aug 29, 2016 at 12:47 PM, L.S. Oswald <lo280 at cam.ac.uk>
>> wrote:
>> 
>> Hello
>> 
>> I'm attempting to install the Einstein Toolkit on Dora, which is a
>> Cray
>> system supercomputer. In doing so I came across the following
>> error:
>> 
>> Configuration script for thorn MPI returned exit code 5
>> Error message: 'MPI could not be configured: neither
>> automatic nor
>> manual configuration succeeded'
>> 
>> In addition the log stated that:
>> No MPI compiler wrapper found beneath MPI_DIR (MPI_DIR =
>> /usr)
>> 
>> I subsequently discovered that it was looking in the wrong place
>> for the
>> MPI root directory and that the reason it was looking under /usr
>> instead
>> of /opt/cray/mpt/7.3.2/gni/mpich-cray/8.3 was because that was the
>> setting in the ubuntu configuration file that I had used when
>> configuring SimFactory. On a reattempt therefore I did not use the
>> ubuntu.cfg file when configuring SimFactory, and got the following
>> error
>> instead:
>> 
>> Configuring with flesh MPI
>> Warning: use of flesh MPI via MPI option is deprecated and
>> should be replaced with the thorn ExternalLibraries/MPI and its
>> MPI_DIR
>> option
>> MPI selected, but no known MPI method - what is
>> "/opt/cray/mpt/7.3.2/gni/mpich-cray/8.3" ?
>> 
>> Attempts at altering the Makefile and the config-info file resulted
>> in
>> either no change, or more errors.
>> 
>> Please would you be able to advise me on the correct way to specify
>> the
>> root directory for MPI?
>> 
>> Many thanks,
>> 
>> Lucy Oswald
>> _______________________________________________
>> Users mailing list
>> Users at einsteintoolkit.org
>> http://lists.einsteintoolkit.org/mailman/listinfo/users [2] [1]
>> 
>> --
>> 
>> Erik Schnetter <schnetter at cct.lsu.edu>
>> http://www.perimeterinstitute.ca/personal/eschnetter/ [3] [2]
>> 
>> Links:
>> ------
>> [1] http://lists.einsteintoolkit.org/mailman/listinfo/users [2]
>> [2] http://www.perimeterinstitute.ca/personal/eschnetter/ [3]
> 
> --
> 
> Erik Schnetter <schnetter at cct.lsu.edu>
> http://www.perimeterinstitute.ca/personal/eschnetter/ [3]
> 
> Links:
> ------
> [1] 
> https://docs.einsteintoolkit.org/et-docs/Simplified_Tutorial_for_New_Users
> [2] http://lists.einsteintoolkit.org/mailman/listinfo/users
> [3] http://www.perimeterinstitute.ca/personal/eschnetter/
> [4] https://docs.einsteintoolkit.org/et-docs/Tutorial_for_New_Users


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