[Users] Changing the default directory for simulations

Maitraya Bhattacharyya maitraya.linux at gmail.com
Thu Aug 10 12:29:31 CDT 2017


Hi Ian,

I noticed that there is a CESSI-BEAST.ini. I have 24 cores on my machine, I
did the following changes,

ppn             = 256
max-num-threads = 256
num-threads     = 24
nodes           = 1

While running, I see the following:

+ set -e
+ cd
/disk1/maitraya/Einstein_Toolkit/ET_Simulations/static_tov/output-0000-active
+ echo Checking:
+ pwd
+ hostname
+ date
+ echo Environment:
+ export CACTUS_NUM_PROCS=1
+ CACTUS_NUM_PROCS=1
+ export CACTUS_NUM_THREADS=24
+ CACTUS_NUM_THREADS=24
+ export GMON_OUT_PREFIX=gmon.out
+ GMON_OUT_PREFIX=gmon.out
+ export OMP_NUM_THREADS=24
+ OMP_NUM_THREADS=24
+ env
+ echo Starting:
++ date +%s
+ export CACTUS_STARTTIME=1502385989
+ CACTUS_STARTTIME=1502385989
+ mpirun -np 1
/disk1/maitraya/Einstein_Toolkit/ET_Simulations/static_tov/SIMFACTORY/exe/cactus_sim
-L 3
/disk1/maitraya/Einstein_Toolkit/ET_Simulations/static_tov/output-0000/static_tov.par

I want to get the -np of the mpirun command to be 24. How do I achieve this
?

Maitraya.

On Thu, Aug 10, 2017 at 10:21 PM, Maitraya Bhattacharyya <
maitraya.linux at gmail.com> wrote:

> Hi,
>
> There isn't one, so I assume that I will have to create one ?
>
> Maitraya.
>
> On Thu, Aug 10, 2017 at 10:09 PM, Ian Hinder <ian.hinder at aei.mpg.de>
> wrote:
>
>>
>> On 10 Aug 2017, at 11:32, Maitraya Bhattacharyya <
>> maitraya.linux at gmail.com> wrote:
>>
>> Hi Ian,
>>
>> Sorry! I forgot to reply to all.
>>
>> My symfactory defs.local.ini is:
>>
>>
>> [default]
>> user            = mkb14ip002
>> email           = mkb14ip002
>> allocation      = NO_ALLOCATION
>>
>> [CESSI-BEAST]
>> user            = mkb14ip002
>> email           = mkb14ip002
>> allocation      = NO_ALLOCATION
>> basedir     = /disk1/maitraya/Einstein_Toolkit/ET_Simulations
>>
>> My machine is CESSI-BEAST, something that I added later for basedir to
>> work.
>>
>> The command I typed was:  ./simfactory/bin/sim submit static_tov
>> --parfile=par/static_tov.par --procs=20 --walltime=8:0:0
>>
>> And the output:
>> Warning: simulation "static_tov" does not exist or is not readable
>> Parameter file: /disk1/maitraya/Einstein_Toolk
>> it/Cactus/par/static_tov.par
>> Skeleton Created
>> Job directory: "/disk1/maitraya/Einstein_Tool
>> kit/ET_Simulations/static_tov"
>> Executable: "/disk1/maitraya/Einstein_Toolkit/Cactus/exe/cactus_sim"
>> Option list: "/disk1/maitraya/Einstein_Toolkit/ET_Simulations/static_tov/
>> SIMFACTORY/cfg/OptionList"
>> Submit script: "/disk1/maitraya/Einstein_Tool
>> kit/ET_Simulations/static_tov/SIMFACTORY/run/SubmitScript"
>> Run script: "/disk1/maitraya/Einstein_Toolkit/ET_Simulations/static_tov/
>> SIMFACTORY/run/RunScript"
>> Parameter file: "/disk1/maitraya/Einstein_Tool
>> kit/ET_Simulations/static_tov/SIMFACTORY/par/static_tov.par"
>> Assigned restart id: 0
>> Error: Too many nodes specified: nodes=20 (maxnodes is 1)
>> Aborting Simfactory.
>>
>>
>> Please can you post simfactory/mdb/machines/CESSI-BEAST.ini?
>>
>> You probably want to set "ppn = 20" in that file.
>>
>> --
>> Ian Hinder
>> http://members.aei.mpg.de/ianhin
>>
>>
>
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