[Users] Error while compiling ET on cluster

[Jordi Manyer]

Hi,

My name is Jordi Manyer from the astrophysics department in Georgia Tech. I'm trying to build the ET on the cluster Cygnus and I've encountered a problem that I think might be related to one of your thorns:
After compiling the thorns, Formaline starts creating tarballs and eventually outputs an error:

Formaline: Creating configuration git repository...
Formaline: Updating files in git repository...
Creating Formaline tarball for thorn Carpet
Creating Formaline tarball for thorn CarpetIOASCII
Creating Formaline tarball for thorn CarpetIOBasic
Creating Formaline tarball for thorn CarpetIOScalar
Creating Formaline tarball for thorn CarpetInterp
Creating Formaline tarball for thorn CarpetReduce
Creating Formaline tarball for thorn CarpetRegrid
Creating Formaline tarball for thorn CarpetRegrid2
Creating Formaline tarball for thorn CarpetSlab
Creating Formaline tarball for thorn WeightedReduce
________________________________________________________________________
Creating cactus_bbh_i15 in /gpfs/pace2/project/pc1/jfuertes7/Cactus/exe from EinsteinBase/ADMBase EinsteinBase/ADMCoupling EinsteinBase/ADMMacros GTThorns/ADM_EJP Numerical/AEILocalInterp EinsteinAnalysis/AHFinderDirect ExternalLibraries/BLAS GTThorns/Baum CactusBase/Boundary Carpet/Carpet Carpet/CarpetIOASCII Carpet/CarpetIOBasic Carpet/CarpetIOScalar Carpet/CarpetInterp Carpet/CarpetLib Carpet/CarpetReduce Carpet/CarpetRegrid Carpet/CarpetRegrid2 Carpet/CarpetSlab Carpet/CarpetTracker CactusBase/CartGrid3D EinsteinBase/Constants CactusBase/CoordBase EinsteinBase/CoordGauge Carpet/CycleClock CactusNumerical/Dissipation EinsteinBase/EOS_Base EinsteinEOS/EOS_IdealFluid CactusElliptic/EllBase CactusElliptic/EllSOR GTThorns/ExternalEtaBeta CactusUtils/Formaline CactusBase/Fortran ExternalLibraries/GSL KrancNumericalTools/GenericFD CactusConnect/HTTPD CactusConnect/HTTPDExtra GTThorns/IHSpin CactusBase/IOASCII CactusBase/IOBasic CactusBase/IOUtil CactusBase/InitBase Kranc/Kranc2BSSNChi ExternalLibraries/LAPACK CactusNumerical/LocalInterp CactusNumerical/LocalReduce Carpet/LoopControl ExternalLibraries/MPI GTThorns/MinTracker CactusNumerical/MoL EinsteinAnalysis/Multipole CactusUtils/NaNChecker CactusUtils/Nice CactusPUGH/PUGH CactusPUGH/PUGHInterp CactusPUGH/PUGHReduce CactusPUGH/PUGHSlab CactusNumerical/Periodic GTThorns/ProperDistance GTThorns/Psi4Analysis EinsteinAnalysis/QuasiLocalMeasures CactusNumerical/ReflectionSymmetry CactusNumerical/RotatingSymmetry180 CactusNumerical/RotatingSymmetry90 GTThorns/RunStats GTThorns/ShiftTracker CactusNumerical/Slab CactusConnect/Socket CactusNumerical/SpaceMask GTThorns/SphereIntegrate GTThorns/SphereRad CactusNumerical/SphericalSurface EinsteinBase/StaticConformal CactusNumerical/SummationByParts CactusBase/SymBase CactusUtils/SystemTopology EinsteinUtils/TGRtensor GTThorns/TeukolskyADMBase CactusBase/Time CactusUtils/TimerReport Carpet/Timers EinsteinBase/TmunuBase CactusUtils/Trigger GTThorns/TwoPunctures CactusUtils/Vectors GTThorns/WaveExtract GTThorns/WeightedReduce EinsteinAnalysis/WeylScal4 GTThorns/Ylm_Decomp ExternalLibraries/hwloc ExternalLibraries/libjpeg ExternalLibraries/zlib
fatal: bad revision 'HEAD'
Formaline: Committing source tree to git repository...
Formaline: Created git tag build-bbh_i15-login-s1.pace.gatech.edu-jfuertes7-2018.11.21-15.14.51-28991
Formaline: Updated git branch config-bbh_i15-login-s1.pace.gatech.edu-gpfs-pace2-project-pc1-jfuertes7-Cactus
Formaline: Optimising git repository (slow only the first time)...
/gpfs/pace2/project/pc1/jfuertes7/Cactus/configs/bbh_i15/lib/libthorn_Multipole.a(multipole.cc.o): In function `_INTERNAL_85__gpfs_pace2_project_pc1_jfuertes7_Cactus_configs_bbh_i15_build_Multipole_multipole_cc_d1a966a7::output_modes(_cGH*, Multipole::variable_desc const*, double const*, Multipole::mode_array const&)':
/gpfs/pace2/project/pc1/jfuertes7/Cactus/configs/bbh_i15/build/Multipole/multipole.cc:128: undefined reference to `Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc const*, double const*, Multipole::mode_array const&)'
make[1]: *** [/gpfs/pace2/project/pc1/jfuertes7/Cactus/exe/cactus_bbh_i15] Error 1
make[1]: *** Waiting for unfinished jobs....
Formaline: Pushing to master git repository...
Formaline: Optimising git repository (slow only the first time)...
Formaline: Pushing to local git repository /gpfs/pace2/project/pc1/jfuertes7/Cactus/../CactusSourceJar.git...
Formaline: Optimising git repository (slow only the first time)...
Formaline: Done.
Formaline: (Formaline has finished updating the git repositories.
Formaline: If the build process seems to hang, some other command
Formaline: is still running, e.g. the final link stage.)
make: *** [bbh_i15] Error 2


Have you ever encountered something similar? The compiler in intel 15.0 with mvapich2 2.1 and mkl 11.2

Thanks,
Jordi




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