[Users] interpolation error
Zach Etienne
zachetie at gmail.com
Thu May 30 11:47:00 CDT 2019
Dear Chia-Hui,
out_of_bounds_xyz is denoted as STEERABLE=ALWAYS. Therefore you can change
the value at any time in your parameter file, even after a checkpoint.
-Zach
* * *
Prof. Zachariah Etienne
West Virginia University
*https://math.wvu.edu/~zetienne/ <https://math.wvu.edu/~zetienne/>*
https://blackholesathome.net
On Thu, May 30, 2019 at 11:43 AM 林家暉 <r06222015 at ntu.edu.tw> wrote:
> Dear Rolnd and Zach,
>
> Thanks for your explanation. My domain size is (-540,-540,-540)x(540,540,540),
> so the interpolation point is outside of the domain as you said.
>
> For using out_of_bounds_xyz, do I need to rerun the simulation from the
> beginning or I can run it from the last checkpoint after adding out_of_bounds_xyz
> in the parameter file ?
>
> Best regards,
>
> Chia-Hui
> ------------------------------
> *寄件者:* Zach Etienne <zachetie at gmail.com>
> *寄件日期:* 2019年5月30日 下午 11:03:03
> *收件者:* Haas, Roland
> *副本:* 林家暉; Einstein Toolkit Users
> *主旨:* Re: [Users] interpolation error
>
> Hi Chia-Hui,
>
> particle_tracerET already has a parameter for this: out_of_bounds_xyz
>
> I follow the general rule of setting it to about 80% of my (coarsest) grid
> size.
>
> -Zach
>
> * * *
> Prof. Zachariah Etienne
> West Virginia University
> *https://math.wvu.edu/~zetienne/ <https://math.wvu.edu/~zetienne/>*
> https://blackholesathome.net
>
>
> On Thu, May 30, 2019 at 10:58 AM Haas, Roland <rhaas at illinois.edu> wrote:
>
>> Hello Chia-Hui,
>>
>> the error message indicates that the code tried to interpolation a
>> quantity to location (x,y,z)=(-157.725,-576.349,-99.2027) but that the
>> grid only has a size of (xmin,ymin,zmin)x(xmax,ymax,zmax) =
>> (-576,-576,-576)x(576,576,576) (where I made a guess for the ymax and
>> zmax values given that the output only shows the shape of the grid on
>> one MPI rank).
>>
>> So the interpolation point is outside of the domain.
>>
>> Depending on what caused the interpolation this could mean eg that a
>> tracer particle (given the function name
>> "DoOneRK4StepForParticleTracerET") tried to leave the domain. This is
>> something that needsto be fixed in the particle_tracerET thorn,
>> probably by making it deactivate particles that get too close to the
>> edge of the domain.
>>
>> Yours,
>> Roland
>>
>> > Hello,
>> >
>> > I am using IllinoisGRMHD with the test with nsns_test.par in
>> https://bitbucket.org/zach_etienne/wvuthorns_diagnostics/src/master/NSNS_parameter_files/
>> .
>> >
>> > The simulation runs well until t~5300 and an error occurs. The error
>> message is like this:
>> >
>> >
>> > WARNING level 1 from host nid02210 process 0
>> > while executing schedule bin particle_tracerET, routine
>> particle_tracerET::DoOneRK4StepForParticleTracerET
>> > in thorn AEILocalInterp, file
>> /global/u1/c/chlin/et/Cactus/arrangements/Numerical/AEILocalInterp/src/Lagrange-tensor-product/../template.c:1109:
>> > ->
>> > CCTK_InterpLocalUniform():
>> > interpolation point is either outside the grid,
>> > or inside but too close to the grid boundary!
>> > (this may be caused by a global interpolation with
>> > driver::ghost_size too small)
>> > 0-origin interpolation point number pt=0 of N_interp_points=1
>> > interpolation point (x,y,z)=(-157.725,-576.349,-99.2027)
>> > grid x_min(delta_x)x_max = -576(18)576
>> > grid y_min(delta_y)y_max = -576(18)54
>> > grid z_min(delta_z)z_max = -576(18)54
>> >
>> > WARNING level 1 from host nid02210 process 0
>> > while executing schedule bin particle_tracerET, routine
>> particle_tracerET::DoOneRK4StepForParticleTracerET
>> > in thorn particle_tracerET, file
>> /global/u1/c/chlin/et/Cactus/arrangements/WVUThorns_Diagnostics/particle_tracerET/src/Interpolate_velocities_at_particle_positions.C:131:
>> > -> interpolation screwed up
>> > WARNING level 1 from host nid02210 process 1
>> > while executing schedule bin particle_tracerET, routine
>> particle_tracerET::DoOneRK4StepForParticleTracerET
>> > in thorn particle_tracerET, file
>> /global/u1/c/chlin/et/Cactus/arrangements/WVUThorns_Diagnostics/particle_tracerET/src/Interpolate_velocities_at_particle_positions.C:131:
>> > -> interpolation screwed up
>> > srun: error: nid02211: tasks 2-3: Exited with exit code 1
>> > srun: Terminating job step 21753671.0
>> > srun: error: nid02210: tasks 0-1: Exited with exit code 1
>> >
>> >
>> > I think maybe t can be avoided by decreasing the timestep so that the
>> tracer particle would not move too fast to make the interpolation screwed
>> up but I am not sure. So what I want to ask is :
>> >
>> > 1. It this error can be avoided by decreasing the timestep ?
>> > 2. If so, how can I decrease the timestep in parameter file (or in
>> other places)?
>> >
>> >
>> > Thank you.
>> > Best regards,
>> > Chia-Hui
>>
>>
>>
>> --
>> My email is as private as my paper mail. I therefore support encrypting
>> and signing email messages. Get my PGP key from http://pgp.mit.edu .
>> _______________________________________________
>> Users mailing list
>> Users at einsteintoolkit.org
>> http://lists.einsteintoolkit.org/mailman/listinfo/users
>>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: http://lists.einsteintoolkit.org/pipermail/users/attachments/20190530/b080e448/attachment.html
More information about the Users
mailing list