[Users] M1 Mac Compiling error

Garrison, David Garrison at uhcl.edu
Wed May 25 11:23:19 CDT 2022 

It works!

Thanks,

-DG

On May 25, 2022, at 10:36 AM, Garrison, David <Garrison at uhcl.edu<mailto:Garrison at uhcl.edu>> wrote:

Hello,

I’ve got 3 M1 Macs.  A 2021 MacBook Air with an M1 and over 20 years of Time Machine backups, a 2021 iMac with an M1 and a different set of old Time Machine backups and a brand new 2022 MacBook Pro with an M1 Max and a fresh OS with no legacy files.  For some reason, I only got ET to compile on the MacBook Air.  I have no idea why this is.  The other 2 give me the error that I shared.  I tried using HomeBrew and MacPorts as well as Intel’s OneApi on each of these.  I’ll check out the link you sent to see if I missed anything.  It would be good to have some documentation on how to install ET on a fresh M1 since that is the first sub-$1000 Mac that seems to be able to effectively run ET code.

-DG

On May 25, 2022, at 10:20 AM, Roland Haas <rhaas at illinois.edu<mailto:rhaas at illinois.edu>> wrote:

Hello David,

looking at your included output somehow clang got involved.

We do not actually document (or support) compiling the ET using clang
on a mac.

Last I heard was that someone did manage to compile the ET with the
latest release on a M1 mac using one of HomeBrew or MacPorts
(installing the packages listed at the top of:
https://github.com/nds-org/jupyter-et/blob/master/tutorial-server/notebooks/CactusTutorial.ipynb<https://urldefense.com/v3/__https://github.com/nds-org/jupyter-et/blob/master/tutorial-server/notebooks/CactusTutorial.ipynb__;!!BCR0FSePrR4x!Dv3eK7C5wwOsMA-_nwPZkJUqvF5JklYngcHpSULm4pPMZp6EXmvyqBji_ioZsO9HCUmes3yvNl6nVRMSb1M$> in the Prerequisites section).

Did you give that a try already?

Yours,
Roland

I’ve tried building from scratch several times using the real clean option between builds.  This is happening on 2 different computers and has been going on for weeks.

-DG
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On May 5, 2022, at 12:45 PM, Erik Schnetter <schnetter at gmail.com<mailto:schnetter at gmail.com><mailto:schnetter at gmail.com>> wrote:

David

Superficially, this looks as if a file was miscompiled. This might
happen if you interrupt a build, and an incomplete object file is left
over. The next build might not detect this.

Starting a new build from scratch would then resolve this.

-erik


On Wed, May 4, 2022 at 4:35 PM Garrison, David <Garrison at uhcl.edu<mailto:Garrison at uhcl.edu><mailto:Garrison at uhcl.edu>> wrote:

Hello,

I keep getting the errors below when I try to compile my ETK code on my M1 Macs. Any ideas on how to correct this?

Updating /Users/garrison/Applications/Cactus/configs/specgrmhd/lib/libthorn_CactusBindings.a
Creating cactus_specgrmhd in /Users/garrison/Applications/Cactus/exe from CactusBase/Boundary CactusBase/CartGrid3D CactusBase/CoordBase CactusBase/Fortran CactusBase/IOASCII CactusBase/IOBasic CactusBase/IOUtil CactusBase/InitBase CactusNumerical/InterpToArray CactusNumerical/LocalInterp2 CactusNumerical/LocalReduce SpecCosmo/MHD_Analysis SpecCosmo/MHD_INIT ExternalLibraries/MPI SpecCosmo/MoL CactusUtils/NaNChecker CactusUtils/Nice CactusNumerical/Noise CactusNumerical/Norms CactusPUGH/PUGH CactusPUGH/PUGHInterp CactusPUGH/PUGHReduce CactusPUGH/PUGHSlab CactusNumerical/Periodic CactusNumerical/Slab SpecCosmo/SpecGRMHD CactusBase/SymBase CactusUtils/SystemStatistics CactusBase/Time CactusUtils/TimerReport CactusUtils/Vectors ExternalLibraries/zlib
Undefined symbols for architecture arm64:
"_analysis1_", referenced from:
_CCTKi_BindingsSchedule_MHD_Analysis in ScheduleMHD_Analysis.c.o
"_analysis2_", referenced from:
_CCTKi_BindingsSchedule_MHD_Analysis in ScheduleMHD_Analysis.c.o
"_analysis3_", referenced from:
_CCTKi_BindingsSchedule_MHD_Analysis in ScheduleMHD_Analysis.c.o
"_analysis4_", referenced from:
_CCTKi_BindingsSchedule_MHD_Analysis in ScheduleMHD_Analysis.c.o
"_checkfortranparameters_", referenced from:
_CCTKi_BindingsSchedule_Fortran in ScheduleFortran.c.o
"_grmhd_initial_", referenced from:
_CCTKi_BindingsSchedule_MHD_INIT in ScheduleMHD_INIT.c.o
ld: symbol(s) not found for architecture arm64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make[2]: *** [/Users/garrison/Applications/Cactus/exe/cactus_specgrmhd] Error 1
make[1]: *** [specgrmhd] Error 2
make: *** [specgrmhd-rebuild] Error 2

-DG

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Yours,
Roland

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University of Houston-Clear Lake
Bayou 3611
Houston, TX 77058

Tel: 281-283-3796
Fax: 281-283-3709
http://sce.uhcl.edu/garrison
http://www.uhcl.edu/physics

"If we knew what it was we were doing, it would not be called research,
would it?" ‹ Albert Einstein.




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--
David Garrison, Ph.D.
Interim Associate Dean for the College of Science and Engineering, Professor and Former Chair of Physics
University of Houston-Clear Lake
Bayou 3611
Houston, TX 77058

Tel: 281-283-3796
Fax: 281-283-3709
http://sce.uhcl.edu/garrison
http://www.uhcl.edu/physics

"If we knew what it was we were doing, it would not be called research,
would it?" ‹ Albert Einstein.




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