<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><br><div><div>On 13 Nov 2011, at 02:57, Petr Tsatsin wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><p> <span class="Apple-style-span" style="font-family: arial, sans-serif; font-size: 13px; ">Hello,</span></p><div>I'm trying to restart my simulation on queenbee using simfactory. I tried "./sim submit --from-restart-id ..." and I got </div></blockquote><div><br></div><div>What was the full command that you used?</div><div><br></div><div>You should not normally need the --from-restart-id option - SimFactory uses this internally. It is supposed to work out which restart to recover from automatically. </div><div><br></div><div>You should be able to do</div><div><br></div><div><span class="Apple-tab-span" style="white-space:pre"> </span>sim submit <simulation></div><div><br></div><div>and it should queue a restart which recovers. If this doesn't work, can you post your log.txt file (from the simulation directory) so we can see what went wrong?</div><div><br></div><br><blockquote type="cite"><div>"Simulation Factory:</div><div> [log] Submitting:</div><div> [log] Using restart id "0002"</div><div> [log] Requested recovering from restart id "0"</div><div> [log] Could not find checkpoint files in restart id "0000" </div><div> Aborting.''</div><div>Inside my parameter file for this simulation I set up HDF5 check pointing in following way:</div><div>"IO::out_dir = $parfile</div><div>IOHDF5::checkpoint = "yes"</div><div>IO::checkpoint_every = 100000</div><div>IO::checkpoint_file = $parfile</div><div>IO::checkpoint_dir = $parfile</div><div>IO::recover="auto"</div><div>IO::recover_file = $parfile</div><div>IO::recover_dir = $parfile"</div><div>I checked that h5 check point files are actually inside the output-0000 directory.</div><div>Any suggestions how can I restart the my simulation from HDF5 checkpoint with a simfactory?</div><div>Thank you.</div><div>-- </div><font color="#888888"><div><font color="#888888">Petr Tsatsin<br>Graduate Student- Department of Physics<br>Charles E. Schmidt College of Science<br>Florida Atlantic University<br><a value="+15612973386" style="color: rgb(17, 65, 112); ">(561)-297-3386</a><br><a href="mailto:ptsatin@fau.edu" target="_blank" style="color: rgb(17, 65, 112); ">ptsatin@fau.edu</a>, <a href="mailto:ptsatsin@gmail.com" target="_blank" style="color: rgb(17, 65, 112); ">ptsatsin@gmail.com</a></font></div></font><div><br class="webkit-block-placeholder"></div>
_______________________________________________<br>Users mailing list<br><a href="mailto:Users@einsteintoolkit.org">Users@einsteintoolkit.org</a><br><a href="http://lists.einsteintoolkit.org/mailman/listinfo/users">http://lists.einsteintoolkit.org/mailman/listinfo/users</a><br></blockquote></div><br><div>
<span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div>-- </div><div>Ian Hinder</div><div><a href="http://numrel.aei.mpg.de/people/hinder">http://numrel.aei.mpg.de/people/hinder</a></div></div></span></div></span></div></span></span>
</div>
<br></body></html>