<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><br><div><div>On 7 Feb 2012, at 17:44, Erik Schnetter wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div>Bernard<br><br>The PGI compiler is often picky about what C++/OpenMP constructs it<br>accepts. Do you want to try the Intel compiler instead? I've been<br>using it successfully on Kraken.<br></div></blockquote><div><br></div><div>Hi Bernard,</div><div><br></div><div>Are you compiling using SimFactory's optionlist? If you use "sim build", as you mentioned, then it will by default pick up kraken-intel.cfg and will use the Intel compiler. </div><div><br></div><div>The build should not depend on the modules you have loaded, as SimFactory sets all the variables etc. itself. When you tried the Cactus make mechanism, what optionlist were you giving it? Cactus auto-detection is unlikely to work out of the box for the entire ET. </div><div><br></div><div>Building using SimFactory was definitely working on Kraken when Maxwell was released (the release test status results are still available at <a href="http://einsteintoolkit.org/release-info/parse_testsuite_results.php">http://einsteintoolkit.org/release-info/parse_testsuite_results.php</a> - note that these are not run regularly, only around the time of a release).</div><div><br></div><div>My previous email about the Kraken software upgrade was wrong - they have postponed the upgrade. However, I have not compiled on Kraken for a while, so it may be that something else changed there.</div><div><br></div><div><br></div><blockquote type="cite"><div><br>-erik<br><br>On Tue, Feb 7, 2012 at 10:54 AM, Kelly, Bernard J.<br>(GSFC-660.0)[UNIVERSITY OF MARYLAND BALTIMORE COUNTY]<br><<a href="mailto:bernard.j.kelly@nasa.gov">bernard.j.kelly@nasa.gov</a>> wrote:<br><blockquote type="cite">Hi Erik.<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">Thanks for the advice. I commented out all references to "signbit", and to<br></blockquote><blockquote type="cite">"kifpos" lower down, and it now gets through the Vectors thorn. I'm now<br></blockquote><blockquote type="cite">hitting an issue with an omp pragma in CarpetLib, but that's a separate<br></blockquote><blockquote type="cite">problem.<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">BTW, I just tried to create a ticket (about the signbit issue) on<br></blockquote><blockquote type="cite"><a href="http://trac.einsteintoolkit.org">trac.einsteintoolkit.org</a>, but ...<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">"Submission rejected as potential spam"<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">I thought it was the list of modules I put in, but even without them it<br></blockquote><blockquote type="cite">gets blocked.<br></blockquote><blockquote type="cite">Also, the TRAC system doesn't list the Maxwell release (ET_2011_10) as a<br></blockquote><blockquote type="cite">possible "version", which makes it hard to give an accurate report.<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">Bernard<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">---------------------------------------------------------------------------<br></blockquote><blockquote type="cite">--<br></blockquote><blockquote type="cite">Bernard Kelly -- CRESST Research Associate, NASA/GSFC<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">Phone: +1 (301) 286-7243<br></blockquote><blockquote type="cite">E-Mail: <a href="mailto:bernard.j.kelly@nasa.gov">bernard.j.kelly@nasa.gov</a><br></blockquote><blockquote type="cite">Web:<br></blockquote><blockquote type="cite"><a href="http://science.gsfc.nasa.gov/sed/index.cfm?fuseAction=people.jumpBio&iphone">http://science.gsfc.nasa.gov/sed/index.cfm?fuseAction=people.jumpBio&iphone</a><br></blockquote><blockquote type="cite">bookid=13052<br></blockquote><blockquote type="cite">---------------------------------------------------------------------------<br></blockquote><blockquote type="cite">--<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">On 2/6/12 11:17 PM, "Erik Schnetter" <<a href="mailto:schnetter@cct.lsu.edu">schnetter@cct.lsu.edu</a>> wrote:<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"><blockquote type="cite">Bernard<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">test.cc is just a self-test. You can try commenting out the respective<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">code (or the whole routine), and see where this gets you.<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">Carpet (which may also use signbit) has a different, more complex<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">logic to handle various levels of C++ compliance, and may actually<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">still do the right thing.<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">-erik<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">On Mon, Feb 6, 2012 at 10:53 PM, Kelly, Bernard J.<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">(GSFC-660.0)[UNIVERSITY OF MARYLAND BALTIMORE COUNTY]<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><<a href="mailto:bernard.j.kelly@nasa.gov">bernard.j.kelly@nasa.gov</a>> wrote:<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">Hi all.<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">I recently checked out ETK Maxwell on the machine XSEDE machine Kraken,<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">and am having trouble compiling and running a simple test case. The<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">problem is with LSUThorns/Vectors/src/test.cc, where the "signbit"<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">function is (apparently) undefined. No doubt the problem recurs with<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">later<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">source files, but I can't get past this one without abandoning Vectors<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">and<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">hence all of Carpet.<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">Now I can compile a "hello world" program in C invoking signbit.cc<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">without<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">a problem, as long as I include <math.h>, so presumably the ETK process<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">is<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">looking in the wrong location for this library or its headers.<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">Since Kraken is a "known" machine in ETK's simfactory, and lots of<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">Numerical Relativity groups must have used it during the recently<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">expired<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">"NR-AR" allocation, I assume the problem's at my end. Any ideas?<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">Thanks,<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">Bernard<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">Some details:<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">(1) I initially used the simfactory "build" mechanism, but I have this<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">problem with a straightforward Cactus "make" as well.<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">(2) Here's a list of my loaded modules on Kraken. I'm using the PGI<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">compilers (item 18 below):<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">1) modules/3.1.6.5<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">2) torque/2.4.14<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">3) moab/5.4.3.s16991<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">4) /opt/cray/xt-asyncpe/default/modulefiles/xtpe-istanbul<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">5) tgusage/3.0-r2<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">6) altd/1.0<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">7) DefApps<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">8) xtpe-target-cnl<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">9) xt-service/2.2.74<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"> 10) xt-os/2.2.74<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"> 11) xt-boot/2.2.74<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"> 12) xt-lustre-ss/2.2.74_1.6.5<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"> 13) cray/job/1.5.5-0.1_2.0202.21413.56.7<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"> 14) cray/csa/3.0.0-1_2.0202.21426.77.7<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"> 15) cray/account/1.0.0-2.0202.19482.49.18<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"> 16) cray/projdb/1.0.0-1.0202.19483.52.1<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"> 17) Base-opts/2.2.74<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"> 18) pgi/11.4.0<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"> 19) xt-libsci/10.5.02<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"> 20) pmi/2.1.4-1.0000.8596.15.1.ss<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"> 21) xt-mpt/5.2.3<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"> 22) xt-pe/2.2.74<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"> 23) xt-asyncpe/4.9<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"> 24) PrgEnv-pgi/2.2.74<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"> 25) cray/MySQL/5.0.64-1.0202.2899.21.1<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"> 26) git/1.7.4.2<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"> 27) python/2.6.4<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"> 28) mercurial/1.6.4<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"> 29) subversion/1.6.9<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"> 30) hdf5-parallel/1.6.10<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">-------------------------------------------------------------------------<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">--<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">--<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">Bernard Kelly -- CRESST Research Associate, NASA/GSFC<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">Phone: +1 (301) 286-7243<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">E-Mail: <a href="mailto:bernard.j.kelly@nasa.gov">bernard.j.kelly@nasa.gov</a><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">Web:<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><a href="http://science.gsfc.nasa.gov/sed/index.cfm?fuseAction=people.jumpBio&ipho">http://science.gsfc.nasa.gov/sed/index.cfm?fuseAction=people.jumpBio&ipho</a><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">ne<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">bookid=13052<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">-------------------------------------------------------------------------<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">--<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">--<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">_______________________________________________<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">Users mailing list<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><a href="mailto:Users@einsteintoolkit.org">Users@einsteintoolkit.org</a><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><a href="http://lists.einsteintoolkit.org/mailman/listinfo/users">http://lists.einsteintoolkit.org/mailman/listinfo/users</a><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">--<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">Erik Schnetter <<a href="mailto:schnetter@cct.lsu.edu">schnetter@cct.lsu.edu</a>> <a href="http://www.cct.lsu.edu/~eschnett/">http://www.cct.lsu.edu/~eschnett/</a><br></blockquote></blockquote><blockquote type="cite"><br></blockquote><br><br><br>-- <br>Erik Schnetter <<a href="mailto:schnetter@cct.lsu.edu">schnetter@cct.lsu.edu</a>> <a href="http://www.cct.lsu.edu/~eschnett/">http://www.cct.lsu.edu/~eschnett/</a><br>_______________________________________________<br>Users mailing list<br><a href="mailto:Users@einsteintoolkit.org">Users@einsteintoolkit.org</a><br><a href="http://lists.einsteintoolkit.org/mailman/listinfo/users">http://lists.einsteintoolkit.org/mailman/listinfo/users</a><br></div></blockquote></div><br><div>
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