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<body class='hmmessage'><div dir='ltr'>Dear All,<div>I have submitted static_tov simulation inside Cactus directory by </div><div>./simfactory/bin/sim submit static_tov --parfile=par/static_tov.par --procs=32 --walltime=8:0:0 --allocation=loni_cactus08</div><div><br></div><div>Inside Cactus directory ./simfactory/bin/sim list-simulations gives</div><div>static_tov [ACTIVE(FINISHED), restart 0000, job id 703467]</div><div>But in /scratch/ettest52/simulations/static_tov I found a log.txt file along with output-0000, output-0000-active and SIMFACTORY directories. The log.txt file contains following</div><div><br></div><div><div>[LOG:2013-08-04 11:09:54] self.create(simulationName, parfile)::Creating simulation static_tov </div><div>[LOG:2013-08-04 11:09:54] self.create(simulationName, parfile)::Simulation directory: /scratch/ettest52/simulations/static_tov </div><div>[LOG:2013-08-04 11:09:54] self.create(simulationName, parfile)::Simulation Properties: </div><div>[LOG:2013-08-04 11:09:54] self.create(simulationName, parfile):: </div><div>[LOG:2013-08-04 11:09:54] self.create(simulationName, parfile)::[properties] </div><div>[LOG:2013-08-04 11:09:54] self.create(simulationName, parfile)::machine = queenbee </div><div>[LOG:2013-08-04 11:09:54] self.create(simulationName, parfile)::simulationid = simulation-static_tov-queenbee-qb3.loni.org-ettest52-2013.08.04-11.09.54-31394 </div><div>[LOG:2013-08-04 11:09:54] self.create(simulationName, parfile)::sourcedir = /home/ettest52/Cactus </div><div>[LOG:2013-08-04 11:09:54] self.create(simulationName, parfile)::configuration = sim </div><div>[LOG:2013-08-04 11:09:54] self.create(simulationName, parfile)::configid = config-sim-qb4.loni.org-home-ettest52-Cactus </div><div>[LOG:2013-08-04 11:09:54] self.create(simulationName, parfile)::buildid = build-sim-qb4.loni.org-ettest52-2013.07.18-07.25.24-12102 </div><div>[LOG:2013-08-04 11:09:54] self.create(simulationName, parfile)::testsuite = False </div><div>[LOG:2013-08-04 11:09:54] self.create(simulationName, parfile)::executable = /scratch/ettest52/simulations/static_tov/SIMFACTORY/exe/cactus_sim </div><div>[LOG:2013-08-04 11:09:54] self.create(simulationName, parfile)::optionlist = /scratch/ettest52/simulations/static_tov/SIMFACTORY/cfg/OptionList </div><div>[LOG:2013-08-04 11:09:54] self.create(simulationName, parfile)::submitscript = /scratch/ettest52/simulations/static_tov/SIMFACTORY/run/SubmitScript </div><div>[LOG:2013-08-04 11:09:54] self.create(simulationName, parfile)::runscript = /scratch/ettest52/simulations/static_tov/SIMFACTORY/run/RunScript </div><div>[LOG:2013-08-04 11:09:54] self.create(simulationName, parfile)::parfile = /scratch/ettest52/simulations/static_tov/SIMFACTORY/par/static_tov.par </div><div>[LOG:2013-08-04 11:09:54] self.create(simulationName, parfile):: </div><div>[LOG:2013-08-04 11:09:54] self.create(simulationName, parfile)::Simulation static_tov created </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::Restart for simulation static_tov created with restart id 0, long restart id 0000 </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::Prepping for submission </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::No previous walltime available to be used, using walltime 8:00:00 </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::Defined substituion properties for submission </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::{'SIMULATION_ID': 'simulation-static_tov-queenbee-qb3.loni.org-ettest52-2013.08.04-11.09.54-31394', 'NODE_PROCS': 1, 'PPN_USED': 8, 'PPN': 8, 'ALLOCATION': 'loni_cactus08', 'WALLTIME_HH': '08', 'CPUFREQ': '2.33', 'USER': 'ettest52', 'RUNDIR': '/scratch/ettest52/simulations/static_tov/output-0000', 'NODES': 4, 'SIMULATION_NAME': 'static_tov', 'WALLTIME': '8:00:00', 'NUM_THREADS': 8, 'EXECUTABLE': '/scratch/ettest52/simulations/static_tov/SIMFACTORY/exe/cactus_sim', 'PROCS_REQUESTED': 32, 'EMAIL': 'urkhanal@tucdp.edu.np', 'RESTART_ID': 0, 'CHAINED_JOB_ID': '', 'FROM_RESTART_COMMAND': '', 'NUM_SMT': 1, 'WALLTIME_SECONDS': 28800, 'SIMFACTORY': '/home/ettest52/Cactus/simfactory/bin/sim', 'PROCS': 32, 'SUBMITSCRIPT': '/scratch/ettest52/simulations/static_tov/output-0000/SIMFACTORY/SubmitScript', 'WALLTIME_HOURS': 8.0, 'WALLTIME_MM': '00', 'PARFILE': '/scratch/ettest52/simulations/static_tov/output-0000/static_tov.par', 'WALLTIME_SS': '00', 'QUEUE': 'checkpt', 'CONFIGURATION': 'sim', 'SOURCEDIR': '/home/ettest52/Cactus', 'HOSTNAME': 'qb3.loni.org', 'NUM_PROCS': 4, 'SCRIPTFILE': '/scratch/ettest52/simulations/static_tov/output-0000/SIMFACTORY/SubmitScript', 'MEMORY': '8192', 'WALLTIME_MINUTES': 480, 'SHORT_SIMULATION_NAME': 'static_tov-0000'} </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::self.Properties: /scratch/ettest52/simulations/static_tov/output-0000/SIMFACTORY/properties.ini </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript):: </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::[properties] </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::machine = queenbee </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::simulationid = simulation-static_tov-queenbee-qb3.loni.org-ettest52-2013.08.04-11.09.54-31394 </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::sourcedir = /home/ettest52/Cactus </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::configuration = sim </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::configid = config-sim-qb4.loni.org-home-ettest52-Cactus </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::buildid = build-sim-qb4.loni.org-ettest52-2013.07.18-07.25.24-12102 </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::testsuite = False </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::executable = /scratch/ettest52/simulations/static_tov/SIMFACTORY/exe/cactus_sim </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::optionlist = /scratch/ettest52/simulations/static_tov/SIMFACTORY/cfg/OptionList </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::submitscript = /scratch/ettest52/simulations/static_tov/SIMFACTORY/run/SubmitScript </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::runscript = /scratch/ettest52/simulations/static_tov/SIMFACTORY/run/RunScript </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::parfile = /scratch/ettest52/simulations/static_tov/SIMFACTORY/par/static_tov.par </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::chainedjobid = -1 </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::ppn = 8 </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::procsrequested = 32 </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::allocation = loni_cactus08 </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::user = ettest52 </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::numsmt = 1 </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::walltime = 8:00:00 </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::numprocs = 4 </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::nodeprocs = 1 </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::numthreads = 8 </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::hostname = qb3.loni.org </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::ppnused = 8 </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::queue = checkpt </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::cpufreq = 2.33 </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::procs = 32 </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::memory = 8192 </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::nodes = 4 </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::pbsSimulationName= static_tov-0000 </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript):: </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::saving substituted submitscript contents to: /scratch/ettest52/simulations/static_tov/output-0000/SIMFACTORY/SubmitScript </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::Executing submission command: qsub /scratch/ettest52/simulations/static_tov/output-0000/SIMFACTORY/SubmitScript </div><div>[LOG:2013-08-04 11:09:54] self.makeActive()::Simulation static_tov with restart-id 0 has been made active </div><div>[LOG:2013-08-04 11:09:54] job_id = self.extractJobId(output)::received raw output: 703467.qb2 </div><div>[LOG:2013-08-04 11:09:54] job_id = self.extractJobId(output):: </div><div>[LOG:2013-08-04 11:09:54] job_id = self.extractJobId(output)::using submitRegex: (\d+)[.]qb2 </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::After searching raw output, it was determined that the job_id is: 703467 </div><div>[LOG:2013-08-04 11:09:54] self.submit(submitScript)::Simulation static_tov, with restart id 0, and job id 703467 has been submitted </div><div>[LOG:2013-08-04 11:11:02] ret = restart.load(sim, activeId)::For simulation static_tov, loaded restart id 0, long restart id 0000 </div><div>[LOG:2013-08-07 02:43:53] ret = restart.load(sim, activeId)::For simulation static_tov, loaded restart id 0, long restart id 0000 </div></div><div><br></div><div><br></div><div><br></div><div>Inside output-0000 there is not static_tov directory but contains SIMFACTORY directory, static_tov.err and static_tov.out files. static_tov.err has [PBS: exec of shell '' failed] and static_tov.out contains following</div><div><br></div><div><div>-------------------------------------- </div><div>Running PBS prologue script </div><div>-------------------------------------- </div><div>User and Job Data: </div><div>-------------------------------------- </div><div>Job ID: 703467.qb2 </div><div>Username: ettest52 </div><div>Group: lsuusers </div><div>Date: 04-Aug-2013 11:10 </div><div>Node: qb453 (6947) </div><div>-------------------------------------- </div><div>PBS has allocated the following nodes: </div><div><br></div><div>qb453 </div><div>qb452 </div><div>qb451 </div><div>qb450 </div><div><br></div><div>A total of 32 processors on 4 nodes allocated </div><div>--------------------------------------------- </div><div>Check nodes and clean them of stray processes </div><div>--------------------------------------------- </div><div>Checking node qb453 11:10:06 </div><div>Checking node qb452 11:10:08 </div><div>Checking node qb451 11:10:09 </div><div>Checking node qb450 11:10:11 </div><div>Done clearing all the allocated nodes </div><div>------------------------------------------------------ </div><div>Concluding PBS prologue script - 04-Aug-2013 11:10:11 </div><div>------------------------------------------------------ </div><div>------------------------------------------------------ </div><div>Running PBS epilogue script - 04-Aug-2013 11:10:12 </div><div>------------------------------------------------------ </div><div>Checking node qb453 (MS) </div><div>Checking node qb450 ok </div><div>Checking node qb451 ok </div><div>Checking node qb452 ok </div><div>Checking node qb453 ok </div><div>------------------------------------------------------ </div><div>Concluding PBS epilogue script - 04-Aug-2013 11:10:19 </div><div>------------------------------------------------------ </div><div>Exit Status: </div><div>Job ID: 703467.qb2 </div><div>Username: ettest52 </div><div>Group: lsuusers </div><div>Job Name: static_tov-0000 </div><div>Session Id: 6946 </div><div>Resource Limits: ncpus=1,nodes=4:ppn=8,walltime=08:00:00 </div><div>Resources Used: cput=00:00:00,mem=112kb,vmem=1416kb,walltime=00:00:00 </div><div>Queue Used: checkpt </div><div>Account String: loni_cactus08 </div><div>Node: qb453 </div><div>Process id: 7476 </div><div>------------------------------------------------------ </div></div><div>How can I solve this problem?</div><div><br><br>Udayaraj Khanal<div><br></div></div> </div></body>
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