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Hello,
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<div>I am attempting to build the CarpetHDF5 VisIt Plugin on a Mac 10.9.4 using version 2.8.0 of VisIt. I get the following error. Any ideas?</div>
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<div>-DG</div>
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<div style="margin: 0px; font-size: 10px; font-family: Monaco;">bash-3.2$ ./install</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">Running: xmledit2.8.0 CarpetHDF5.xml</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">Running: xml2cmake2.8.0 CarpetHDF5.xml</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">-----------------------------------------------------------------</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;"> Parsed document of type Plugin</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">-----------------------------------------------------------------</div>
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<div style="margin: 0px; font-size: 10px; font-family: Monaco;">Plugin: CarpetHDF5 ("Carpet AMR/curvilinear HDF5 output generated by the Cactus Computational Toolkit", type=database) -- version 2.1</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;"> Attribute: ()</div>
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<div style="margin: 0px; font-size: 10px; font-family: Monaco;">-- The C compiler identification is AppleClang 5.1.0.5030040</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">-- The CXX compiler identification is AppleClang 5.1.0.5030040</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">-- Check for working C compiler: /usr/bin/cc</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">-- Check for working C compiler: /usr/bin/cc -- works</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">-- Detecting C compiler ABI info</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">-- Detecting C compiler ABI info - done</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">-- Check for working CXX compiler: /usr/bin/c++</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">-- Check for working CXX compiler: /usr/bin/c++ -- works</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">-- Detecting CXX compiler ABI info</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">-- Detecting CXX compiler ABI info - done</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">-- Configuring done</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">CMake Warning (dev):</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;"> Policy CMP0042 is not set: MACOSX_RPATH is enabled by default. Run "cmake</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;"> --help-policy CMP0042" for policy details. Use the cmake_policy command to</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;"> set the policy and suppress this warning.</div>
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<div style="margin: 0px; font-size: 10px; font-family: Monaco;"> MACOSX_RPATH is not specified for the following targets:</div>
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<div style="margin: 0px; font-size: 10px; font-family: Monaco;"> ECarpetHDF5Database_par</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;"> ECarpetHDF5Database_ser</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;"> ICarpetHDF5Database</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;"> MCarpetHDF5Database</div>
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<div style="margin: 0px; font-size: 10px; font-family: Monaco;">This warning is for project developers. Use -Wno-dev to suppress it.</div>
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<div style="margin: 0px; font-size: 10px; font-family: Monaco;">-- Generating done</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">-- Build files have been written to: /Users/garrison/Downloads/CarpetHDF5</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(213, 59, 211);">
Scanning dependencies of target ECarpetHDF5Database_par</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(52, 189, 38);">
<span style="color: #000000">[ 6%] </span>Building CXX object CMakeFiles/ECarpetHDF5Database_par.dir/CarpetHDF5EnginePluginInfo.C.o</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(52, 189, 38);">
<span style="color: #000000">[ 12%] </span>Building CXX object CMakeFiles/ECarpetHDF5Database_par.dir/CarpetHDF5PluginInfo.C.o</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(52, 189, 38);">
<span style="color: #000000">[ 18%] </span>Building CXX object CMakeFiles/ECarpetHDF5Database_par.dir/CarpetHDF5CommonPluginInfo.C.o</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(52, 189, 38);">
<span style="color: #000000">[ 25%] </span>Building CXX object CMakeFiles/ECarpetHDF5Database_par.dir/avtCarpetHDF5FileFormat.C.o</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(52, 189, 38);">
<span style="color: #000000">[ 31%] </span>Building CXX object CMakeFiles/ECarpetHDF5Database_par.dir/H5Index.C.o</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(195, 55, 32);">
Linking CXX shared library /Users/garrison/.visit/2.8.0/darwin-x86_64/plugins/databases/libECarpetHDF5Database_par.dylib</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">Undefined symbols for architecture x86_64:</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;"> "avtFileFormat::AddMeshToMetaData(avtDatabaseMetaData*, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, avtMeshType, double const*, int, int, int, int,
int const*)", referenced from:</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;"> avtCarpetHDF5FileFormat::PopulateDatabaseMetaData(avtDatabaseMetaData*, int) in avtCarpetHDF5FileFormat.C.o</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;"> "avtScalarMetaData::avtScalarMetaData(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char>
>, avtCentering)", referenced from:</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;"> avtCarpetHDF5FileFormat::PopulateDatabaseMetaData(avtDatabaseMetaData*, int) in avtCarpetHDF5FileFormat.C.o</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;"> "avtVectorMetaData::avtVectorMetaData(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char>
>, avtCentering, int)", referenced from:</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;"> avtCarpetHDF5FileFormat::PopulateDatabaseMetaData(avtDatabaseMetaData*, int) in avtCarpetHDF5FileFormat.C.o</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;"> "avtDatabaseMetaData::AddGroupInformation(int, int, std::__1::vector<int, std::__1::allocator<int> >&)", referenced from:</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;"> avtCarpetHDF5FileFormat::PopulateDatabaseMetaData(avtDatabaseMetaData*, int) in avtCarpetHDF5FileFormat.C.o</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;"> "avtDatabaseMetaData::SetTimes(std::__1::vector<double, std::__1::allocator<double> > const&)", referenced from:</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;"> avtCarpetHDF5FileFormat::PopulateDatabaseMetaData(avtDatabaseMetaData*, int) in avtCarpetHDF5FileFormat.C.o</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;"> "avtDatabaseMetaData::SetCycles(std::__1::vector<int, std::__1::allocator<int> > const&)", referenced from:</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;"> avtCarpetHDF5FileFormat::PopulateDatabaseMetaData(avtDatabaseMetaData*, int) in avtCarpetHDF5FileFormat.C.o</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;"> "avtDatabaseMetaData::GetMesh(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) const", referenced from:</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;"> avtCarpetHDF5FileFormat::PopulateDatabaseMetaData(avtDatabaseMetaData*, int) in avtCarpetHDF5FileFormat.C.o</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">ld: symbol(s) not found for architecture x86_64</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">clang: error: linker command failed with exit code 1 (use -v to see invocation)</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">make[2]: *** [/Users/garrison/.visit/2.8.0/darwin-x86_64/plugins/databases/libECarpetHDF5Database_par.dylib] Error 1</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">make[1]: *** [CMakeFiles/ECarpetHDF5Database_par.dir/all] Error 2</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">make: *** [all] Error 2</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">bash-3.2$ </div>
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<div apple-content-edited="true"><span class="Apple-style-span" style="border-collapse: separate; border-spacing: 0px;">
<div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; font-size: 12px; ">
<span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; ">
<div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">
<span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; ">
<div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">
<div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; font: normal normal normal 12px/normal 'Times New Roman'; ">
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-- </div>
<div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; font: normal normal normal 16px/normal 'Times New Roman'; ">
David Garrison, Ph.D. </div>
<div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; font: normal normal normal 16px/normal 'Times New Roman'; ">
Associate Professor and Chair of Physics</div>
<div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; font: normal normal normal 16px/normal 'Times New Roman'; ">
University of Houston-Clear Lake </div>
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Bayou 3531</div>
<div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; font: normal normal normal 16px/normal 'Times New Roman'; ">
Houston, TX 77058 </div>
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<div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; font: normal normal normal 16px/normal 'Times New Roman'; ">
Tel: 281-283-3796 </div>
<div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; font: normal normal normal 16px/normal 'Times New Roman'; ">
Fax: 281-283-3709 </div>
<div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; font: normal normal normal 16px/normal 'Times New Roman'; ">
<a href="http://sce.uhcl.edu/garrison">http://sce.uhcl.edu/garrison</a> </div>
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<br>
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<div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; font: normal normal normal 16px/normal 'Times New Roman'; ">
For more information about the UHCL Physics Program go to <a href="http://www.uhcl.edu/physics">
http://www.uhcl.edu/physics</a> or sign up for UHCL newsletters at <a href="https://ecommunications.houston.edu/uhcl/join.html">
https://ecommunications.houston.edu/uhcl/join.html</a></div>
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<div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; font: normal normal normal 16px/normal 'Times New Roman'; ">
"If we knew what it was we were doing, it would not be called research, would it?" — Albert Einstein. </div>
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