<html>
<head>
<meta content="text/html; charset=ISO-8859-1"
http-equiv="Content-Type">
</head>
<body bgcolor="#FFFFFF" text="#000000">
<div class="moz-cite-prefix">The current version of Visit comes with
the plugin already. You don't need to build it.<br>
<br>
Cheers,<br>
Steve<br>
<br>
On 09/16/2014 06:45 PM, Garrison, David wrote:<br>
</div>
<blockquote cite="mid:36F95D6C-C20E-4F43-B061-858BAD4719B1@uhcl.edu"
type="cite">
<meta http-equiv="Content-Type" content="text/html;
charset=ISO-8859-1">
Hello,
<div><br>
</div>
<div>I am attempting to build the CarpetHDF5 VisIt Plugin on a Mac
10.9.4 using version 2.8.0 of VisIt. I get the following error.
Any ideas?</div>
<div><br>
</div>
<div>-DG</div>
<div><br>
</div>
<div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">bash-3.2$
./install</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">Running:
xmledit2.8.0 CarpetHDF5.xml</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">Running:
xml2cmake2.8.0 CarpetHDF5.xml</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">-----------------------------------------------------------------</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">
Parsed document of type Plugin</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">-----------------------------------------------------------------</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;
min-height: 14px;">
<br>
</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">Plugin:
CarpetHDF5 ("Carpet AMR/curvilinear HDF5 output generated by
the Cactus Computational Toolkit", type=database) -- version
2.1</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">
Attribute: ()</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;
min-height: 14px;">
<br>
</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">--
The C compiler identification is AppleClang 5.1.0.5030040</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">--
The CXX compiler identification is AppleClang 5.1.0.5030040</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">--
Check for working C compiler: /usr/bin/cc</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">--
Check for working C compiler: /usr/bin/cc -- works</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">--
Detecting C compiler ABI info</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">--
Detecting C compiler ABI info - done</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">--
Check for working CXX compiler: /usr/bin/c++</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">--
Check for working CXX compiler: /usr/bin/c++ -- works</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">--
Detecting CXX compiler ABI info</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">--
Detecting CXX compiler ABI info - done</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">--
Configuring done</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">CMake
Warning (dev):</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">
Policy CMP0042 is not set: MACOSX_RPATH is enabled by
default. Run "cmake</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">
--help-policy CMP0042" for policy details. Use the
cmake_policy command to</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">
set the policy and suppress this warning.</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;
min-height: 14px;">
<br>
</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">
MACOSX_RPATH is not specified for the following targets:</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;
min-height: 14px;">
<br>
</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">
ECarpetHDF5Database_par</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">
ECarpetHDF5Database_ser</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">
ICarpetHDF5Database</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">
MCarpetHDF5Database</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;
min-height: 14px;">
<br>
</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">This
warning is for project developers. Use -Wno-dev to suppress
it.</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;
min-height: 14px;">
<br>
</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">--
Generating done</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">--
Build files have been written to:
/Users/garrison/Downloads/CarpetHDF5</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;
color: rgb(213, 59, 211);">
Scanning dependencies of target ECarpetHDF5Database_par</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;
color: rgb(52, 189, 38);">
<span style="color: #000000">[ 6%] </span>Building CXX
object
CMakeFiles/ECarpetHDF5Database_par.dir/CarpetHDF5EnginePluginInfo.C.o</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;
color: rgb(52, 189, 38);">
<span style="color: #000000">[ 12%] </span>Building CXX
object
CMakeFiles/ECarpetHDF5Database_par.dir/CarpetHDF5PluginInfo.C.o</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;
color: rgb(52, 189, 38);">
<span style="color: #000000">[ 18%] </span>Building CXX
object
CMakeFiles/ECarpetHDF5Database_par.dir/CarpetHDF5CommonPluginInfo.C.o</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;
color: rgb(52, 189, 38);">
<span style="color: #000000">[ 25%] </span>Building CXX
object
CMakeFiles/ECarpetHDF5Database_par.dir/avtCarpetHDF5FileFormat.C.o</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;
color: rgb(52, 189, 38);">
<span style="color: #000000">[ 31%] </span>Building CXX
object CMakeFiles/ECarpetHDF5Database_par.dir/H5Index.C.o</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;
color: rgb(195, 55, 32);">
Linking CXX shared library
/Users/garrison/.visit/2.8.0/darwin-x86_64/plugins/databases/libECarpetHDF5Database_par.dylib</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">Undefined
symbols for architecture x86_64:</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">
"avtFileFormat::AddMeshToMetaData(avtDatabaseMetaData*,
std::__1::basic_string<char,
std::__1::char_traits<char>,
std::__1::allocator<char> >, avtMeshType, double
const*, int, int, int, int, int const*)", referenced from:</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">
avtCarpetHDF5FileFormat::PopulateDatabaseMetaData(avtDatabaseMetaData*,
int) in avtCarpetHDF5FileFormat.C.o</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">
"avtScalarMetaData::avtScalarMetaData(std::__1::basic_string<char,
std::__1::char_traits<char>,
std::__1::allocator<char> >,
std::__1::basic_string<char,
std::__1::char_traits<char>,
std::__1::allocator<char> >, avtCentering)",
referenced from:</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">
avtCarpetHDF5FileFormat::PopulateDatabaseMetaData(avtDatabaseMetaData*,
int) in avtCarpetHDF5FileFormat.C.o</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">
"avtVectorMetaData::avtVectorMetaData(std::__1::basic_string<char,
std::__1::char_traits<char>,
std::__1::allocator<char> >,
std::__1::basic_string<char,
std::__1::char_traits<char>,
std::__1::allocator<char> >, avtCentering, int)",
referenced from:</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">
avtCarpetHDF5FileFormat::PopulateDatabaseMetaData(avtDatabaseMetaData*,
int) in avtCarpetHDF5FileFormat.C.o</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">
"avtDatabaseMetaData::AddGroupInformation(int, int,
std::__1::vector<int, std::__1::allocator<int>
>&)", referenced from:</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">
avtCarpetHDF5FileFormat::PopulateDatabaseMetaData(avtDatabaseMetaData*,
int) in avtCarpetHDF5FileFormat.C.o</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">
"avtDatabaseMetaData::SetTimes(std::__1::vector<double,
std::__1::allocator<double> > const&)",
referenced from:</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">
avtCarpetHDF5FileFormat::PopulateDatabaseMetaData(avtDatabaseMetaData*,
int) in avtCarpetHDF5FileFormat.C.o</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">
"avtDatabaseMetaData::SetCycles(std::__1::vector<int,
std::__1::allocator<int> > const&)", referenced
from:</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">
avtCarpetHDF5FileFormat::PopulateDatabaseMetaData(avtDatabaseMetaData*,
int) in avtCarpetHDF5FileFormat.C.o</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">
"avtDatabaseMetaData::GetMesh(std::__1::basic_string<char,
std::__1::char_traits<char>,
std::__1::allocator<char> > const&) const",
referenced from:</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">
avtCarpetHDF5FileFormat::PopulateDatabaseMetaData(avtDatabaseMetaData*,
int) in avtCarpetHDF5FileFormat.C.o</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">ld:
symbol(s) not found for architecture x86_64</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">clang:
error: linker command failed with exit code 1 (use -v to see
invocation)</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">make[2]:
***
[/Users/garrison/.visit/2.8.0/darwin-x86_64/plugins/databases/libECarpetHDF5Database_par.dylib]
Error 1</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">make[1]:
*** [CMakeFiles/ECarpetHDF5Database_par.dir/all] Error 2</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">make:
*** [all] Error 2</div>
<div style="margin: 0px; font-size: 10px; font-family: Monaco;">bash-3.2$ </div>
<div><br>
</div>
<div apple-content-edited="true"><span class="Apple-style-span"
style="border-collapse: separate; border-spacing: 0px;">
<div style="word-wrap: break-word; -webkit-nbsp-mode: space;
-webkit-line-break: after-white-space; font-size: 12px; ">
<span class="Apple-style-span" style="border-collapse:
separate; color: rgb(0, 0, 0); font-family: Helvetica;
font-size: 12px; font-style: normal; font-variant:
normal; font-weight: normal; letter-spacing: normal;
line-height: normal; orphans: 2; text-indent: 0px;
text-transform: none; white-space: normal; widows: 2;
word-spacing: 0px; -webkit-border-horizontal-spacing:
0px; -webkit-border-vertical-spacing: 0px;
-webkit-text-decorations-in-effect: none;
-webkit-text-size-adjust: auto;
-webkit-text-stroke-width: 0px; ">
<div style="word-wrap: break-word; -webkit-nbsp-mode:
space; -webkit-line-break: after-white-space; ">
<span class="Apple-style-span" style="border-collapse:
separate; color: rgb(0, 0, 0); font-family:
Helvetica; font-size: 12px; font-style: normal;
font-variant: normal; font-weight: normal;
letter-spacing: normal; line-height: normal;
orphans: 2; text-indent: 0px; text-transform: none;
white-space: normal; widows: 2; word-spacing: 0px;
-webkit-border-horizontal-spacing: 0px;
-webkit-border-vertical-spacing: 0px;
-webkit-text-decorations-in-effect: none;
-webkit-text-size-adjust: auto;
-webkit-text-stroke-width: 0px; ">
<div style="word-wrap: break-word;
-webkit-nbsp-mode: space; -webkit-line-break:
after-white-space; ">
<div style="margin-top: 0px; margin-right: 0px;
margin-bottom: 0px; margin-left: 0px; font:
normal normal normal 12px/normal 'Times New
Roman'; ">
<div style="margin-top: 0px; margin-right: 0px;
margin-bottom: 0px; margin-left: 0px; font:
normal normal normal 16px/normal 'Times New
Roman'; ">
-- </div>
<div style="margin-top: 0px; margin-right: 0px;
margin-bottom: 0px; margin-left: 0px; font:
normal normal normal 16px/normal 'Times New
Roman'; ">
David Garrison, Ph.D. </div>
<div style="margin-top: 0px; margin-right: 0px;
margin-bottom: 0px; margin-left: 0px; font:
normal normal normal 16px/normal 'Times New
Roman'; ">
Associate Professor and Chair of Physics</div>
<div style="margin-top: 0px; margin-right: 0px;
margin-bottom: 0px; margin-left: 0px; font:
normal normal normal 16px/normal 'Times New
Roman'; ">
University of Houston-Clear Lake </div>
<div style="margin-top: 0px; margin-right: 0px;
margin-bottom: 0px; margin-left: 0px; font:
normal normal normal 16px/normal 'Times New
Roman'; ">
Bayou 3531</div>
<div style="margin-top: 0px; margin-right: 0px;
margin-bottom: 0px; margin-left: 0px; font:
normal normal normal 16px/normal 'Times New
Roman'; ">
Houston, TX 77058 </div>
<div style="margin-top: 0px; margin-right: 0px;
margin-bottom: 0px; margin-left: 0px; font:
normal normal normal 16px/normal 'Times New
Roman'; min-height: 18px; ">
<br>
</div>
<div style="margin-top: 0px; margin-right: 0px;
margin-bottom: 0px; margin-left: 0px; font:
normal normal normal 16px/normal 'Times New
Roman'; ">
Tel: 281-283-3796 </div>
<div style="margin-top: 0px; margin-right: 0px;
margin-bottom: 0px; margin-left: 0px; font:
normal normal normal 16px/normal 'Times New
Roman'; ">
Fax: 281-283-3709 </div>
<div style="margin-top: 0px; margin-right: 0px;
margin-bottom: 0px; margin-left: 0px; font:
normal normal normal 16px/normal 'Times New
Roman'; ">
<a moz-do-not-send="true"
href="http://sce.uhcl.edu/garrison">http://sce.uhcl.edu/garrison</a> </div>
<div style="margin-top: 0px; margin-right: 0px;
margin-bottom: 0px; margin-left: 0px; font:
normal normal normal 16px/normal 'Times New
Roman'; min-height: 18px; ">
<br>
</div>
<div style="margin-top: 0px; margin-right: 0px;
margin-bottom: 0px; margin-left: 0px; font:
normal normal normal 16px/normal 'Times New
Roman'; ">
For more information about the UHCL Physics
Program go to <a moz-do-not-send="true"
href="http://www.uhcl.edu/physics">
http://www.uhcl.edu/physics</a> or sign up
for UHCL newsletters at <a
moz-do-not-send="true"
href="https://ecommunications.houston.edu/uhcl/join.html">
https://ecommunications.houston.edu/uhcl/join.html</a></div>
<div style="margin-top: 0px; margin-right: 0px;
margin-bottom: 0px; margin-left: 0px; font:
normal normal normal 16px/normal 'Times New
Roman'; min-height: 18px; ">
<br>
</div>
<div style="margin-top: 0px; margin-right: 0px;
margin-bottom: 0px; margin-left: 0px; font:
normal normal normal 16px/normal 'Times New
Roman'; ">
"If we knew what it was we were doing, it
would not be called research, would it?" —
Albert Einstein. </div>
</div>
</div>
</span></div>
</span></div>
<br class="Apple-interchange-newline">
</span><br class="Apple-interchange-newline">
</div>
<br>
</div>
<br>
<fieldset class="mimeAttachmentHeader"></fieldset>
<br>
<pre wrap="">_______________________________________________
Users mailing list
<a class="moz-txt-link-abbreviated" href="mailto:Users@einsteintoolkit.org">Users@einsteintoolkit.org</a>
<a class="moz-txt-link-freetext" href="http://lists.einsteintoolkit.org/mailman/listinfo/users">http://lists.einsteintoolkit.org/mailman/listinfo/users</a>
</pre>
</blockquote>
<br>
</body>
</html>