<div dir="ltr">On Wed, May 20, 2015 at 2:26 PM, Comer Duncan <span dir="ltr"><<a href="mailto:comer.duncan@gmail.com" target="_blank">comer.duncan@gmail.com</a>></span> wrote:<br><div class="gmail_extra"><div class="gmail_quote"><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Hi Ian,<div><br></div><div>Oh well. You can find the contents of build3.log on <a href="http://pastebin.com/0q9NNAT4" target="_blank">http://pastebin.com/0q9NNAT4</a> and I note nothing different, or so it seems. Here is a query about mpich and openmpi on my system:</div><div><br></div><div><div>ComerMacProRetina:Cactus comerduncan$ port installed | grep mpich</div><div> mpich-default @3.1.3_0+gcc49</div><div> mpich-default @3.1.4_0+gcc49</div><div> petsc @3.5.3_1+accelerate+hwloc+mpich</div><div>ComerMacProRetina:Cactus comerduncan$ port installed | grep openmpi</div><span class=""><div> openmpi @1.7.5_3 (active)</div><div> openmpi-default @1.7.5_3+gcc47 (active)</div></span><div> petsc @3.5.3_1+accelerate+hwloc+openmpi (active)</div></div><div><br></div><div><br></div><div>Also, I note in the osx-macport config file that the compiler specified is gcc49 to wit:</div><div><br></div><div><div>CPP = cpp-mp-4.9</div><div>FPP = cpp-mp-4.9</div><div>CC = gcc-mp-4.9</div><div>CXX = g++-mp-4.9</div><div>F90 = gfortran-mp-4.9</div></div><div><br></div><div>However, note that the active openmpi-default points to gcc47. Could this be a problem?</div></div></blockquote><div><br></div><div>I think not. Compilers are quite compatible. There is an issue with which libstdc++ is used, but MacPorts is careful to do the right thing for different compilers.</div><div><br></div><div>-erik</div><div><br></div><div> </div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><span class=""><div>Thanks for your help.</div><div><br></div><div>Comer</div></span></div><div class="HOEnZb"><div class="h5"><div class="gmail_extra"><br><div class="gmail_quote">On Wed, May 20, 2015 at 12:55 PM, Ian Hinder <span dir="ltr"><<a href="mailto:ian.hinder@aei.mpg.de" target="_blank">ian.hinder@aei.mpg.de</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="word-wrap:break-word"><br><div><span><div>On 20 May 2015, at 18:35, Comer Duncan <<a href="mailto:comer.duncan@gmail.com" target="_blank">comer.duncan@gmail.com</a>> wrote:</div><br><blockquote type="cite"><div dir="ltr">Ok, I deactivated mpich and have run <span style="font-size:12.8000001907349px">simfactory/bin/sim build --optionlist=osx-macports.cfg >build2.log 2>&1 and get similar errors. I have pasted the contents of build2.log to <a href="http://pastebin.com/kcua0vKQ" target="_blank">http://pastebin.com/kcua0vKQ</a>. It does not seem that the deactivation of mpich had the desired effect.</span></div></blockquote><div><br></div></span><div>You probably need to do a clean build by removing configs/sim and building again (this is usually good advice in general, if you suspect there is something weird happening with the build system). Having both MPI versions' header files around during compilation might have caused the problems.</div></div><span><br><div>
<div style="color:rgb(0,0,0);letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;word-wrap:break-word"><div style="color:rgb(0,0,0);letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;word-wrap:break-word"><div style="color:rgb(0,0,0);letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;word-wrap:break-word"><div style="color:rgb(0,0,0);letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;word-wrap:break-word"><div>-- </div><div>Ian Hinder</div><div><a href="http://members.aei.mpg.de/ianhin" target="_blank">http://members.aei.mpg.de/ianhin</a></div></div></div></div></div>
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</div></div></blockquote></div><br><br clear="all"><div><br></div>-- <br><div class="gmail_signature">Erik Schnetter <<a href="mailto:schnetter@cct.lsu.edu" target="_blank">schnetter@cct.lsu.edu</a>><br><a href="http://www.perimeterinstitute.ca/personal/eschnetter/" target="_blank">http://www.perimeterinstitute.ca/personal/eschnetter/</a></div>
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