<html><head><meta http-equiv="Content-Type" content="text/html charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;"><br><div><div>On 20 Aug 2015, at 10:56, dumsani <<a href="mailto:g14n8326@campus.ru.ac.za">g14n8326@campus.ru.ac.za</a>> wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite">Hi Frank, Everyone<br><br>The problem was solved. Thanks to your suggestion to use the<br>VERBOSE=yes option. This option revealed that the HDF5<br>library path was not correctly specified in my .cfg file. There<br>was an extra /lib bit on the path, instead of giving the path only<br>up to the top-level library directory. That apparently confused<br>the compiler, and hence the include directory could not be<br>found.<br><br>Thank you for your assistance.<br></blockquote><div><br></div><div>Perhaps the HDF5 thorn (and all other external library thorns) should check that the paths given actually exist, and abort, or at least give a warning, if they don't?</div><br><blockquote type="cite"><br>Kind regards,<br>Dumsani<br><br>On 19/08/2015 18:21, Frank Loeffler wrote:<br><blockquote type="cite">On Wed, Aug 19, 2015 at 05:54:51PM +0200, dumsani wrote:<br><blockquote type="cite">I'am trying to build (compile) a simulation using some private thorns and<br>the Einstein Toolkit (ET_2014_05). The build goes through successfully on<br>my local machine (a laptop running on Gnu/Linux mint 17.1, using GCC<br>compilers).<br><br>However, when compiling the same code on a remote cluster (running on<br>Gnu/Linux RedHat plus Intel compilers) the compiling persistently fails with<br>the error:<br>cactus/arrangements/EinsteinAnalysis/AHFinderDirect/src/patch/patch_system.cc(87):<br><br>catastrophic error: cannot open source file "hdf5.h"<br> # include <hdf5.h><br></blockquote>This failure, as you probably guessed, means that the compiler cannot<br>find the hdf5 library - not just the C++ part, the library itself.<br><br><blockquote type="cite">Searching on Google, there seems to have been aticket<br>(<a href="https://trac.einsteintoolkit.org/ticket/911">https://trac.einsteintoolkit.org/ticket/911</a>, or<br><a href="http://lists.einsteintoolkit.org/pipermail/users/2012-July/002333.html">http://lists.einsteintoolkit.org/pipermail/users/2012-July/002333.html</a>) on<br>this<br>issue and it was resolved.<br></blockquote>Since you are using 2014_05 this should be already resolved in your<br>checkout.<br><br>Compile again, using 'make sim VERBOSE=yes'. This should give you<br>the complete compiler command line used for<br>cactus/arrangements/EinsteinAnalysis/AHFinderDirect/src/patch/patch_system.cc.<br>See if this line includes the hdf5 library (it does not have to<br>necessarily). Besides that line, let us know how the HDF5 thorn<br>configured HDF5: do you use a system-provided version, a version you<br>compiled yourself, or a version Cactus built for you?<br><br>We would need at least that information to see what is going on. Also -<br>did you try using a newer ET release?<br><br>Frank<br><br></blockquote><br>_______________________________________________<br>Users mailing list<br><a href="mailto:Users@einsteintoolkit.org">Users@einsteintoolkit.org</a><br>http://lists.einsteintoolkit.org/mailman/listinfo/users<br></blockquote></div><br><div apple-content-edited="true">
<div style="color: rgb(0, 0, 0); letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;"><div style="color: rgb(0, 0, 0); letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;"><div style="color: rgb(0, 0, 0); letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;"><div style="color: rgb(0, 0, 0); letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;"><div>-- </div><div>Ian Hinder</div><div><a href="http://members.aei.mpg.de/ianhin">http://members.aei.mpg.de/ianhin</a></div></div></div></div></div>
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