<div dir="ltr">Hi Beany,<div><br></div><div>This suggests that there is a problem with the h5mma reader for HDF5 data. Can you try running the attached notebook in a fresh Mathematica kernel, changing the path to point to your own home directory? You should be able to reproduce the output that is in the notebook.</div><div><br></div><div>I have just run this on my Mac with Mathematica 10.4.0, OS X 10.11.4, SimulationTools 1.0.0 and h5mma 1.2.0 and it worked fine, so this should tell us if the problem is with h5mma, or elsewhere.</div><div><br></div><div>Regards,</div><div>Barry</div></div><div class="gmail_extra"><br><div class="gmail_quote">On Tue, Apr 12, 2016 at 4:41 PM, Bernard Kelly <span dir="ltr"><<a href="mailto:physicsbeany@gmail.com" target="_blank">physicsbeany@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">BTW, I'm running Mathematica 10.4.0 on OS X 10.11.4 ("El Capitan")<br>
<span class="HOEnZb"><font color="#888888"><br>
B<br>
</font></span><div class="HOEnZb"><div class="h5"><br>
On 12 April 2016 at 11:30, Bernard Kelly <<a href="mailto:physicsbeany@gmail.com">physicsbeany@gmail.com</a>> wrote:<br>
> Hi. Today's silly question:<br>
><br>
> I'm trying to use SimulationTools to work with some Carpet HDF5 data.<br>
> I've loaded SimulationTools & h5mma with no apparent issues, but this<br>
> line fails:<br>
><br>
>> ToDataRegion[ ImportHDF5[ "<full path to mydata.h5", {"Datasets", "mydataset"}]]<br>
><br>
> ... with the error message:<br>
><br>
> LinkObject::linkd: Unable to communicate with closed link<br>
> LinkObject['/Users/bjkelly1/Library/Mathematica/Applications/h5mma/MacOSX-x86-64/h5mma',397,6].<br>
>>><br>
><br>
> I can verify that the executable is where that error message says it<br>
> is, and it's world-runnable. Any ideas why it's not working?<br>
><br>
> thanks<br>
><br>
> Beany<br>
><br>
> P.S. I've never used SimulationTools or h5mma before. I followed the<br>
> simple installation instructions from<br>
> <a href="http://simulationtools.org/Documentation/English/Tutorials/Introduction.html" rel="noreferrer" target="_blank">http://simulationtools.org/Documentation/English/Tutorials/Introduction.html</a><br>
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