<div dir="ltr"><div><div>Hi,<br><br></div>I got this error once. If I remember correctly, it requires szip to be installed or loaded as a module. It also comes with hdf5, so you might try different hdf5 module too.<br><br></div>-rahul<br></div><div class="gmail_extra"><br><div class="gmail_quote">On Wed, Jun 29, 2016 at 2:00 PM, Hamilton, Maria <span dir="ltr"><<a href="mailto:babiuc@marshall.edu" target="_blank">babiuc@marshall.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hello,<br>
<br>
Indeed, gcc was outdated. I loaded gnu/<a href="http://4.9.2." rel="noreferrer" target="_blank">4.9.2.</a><br>
I got it configured, but at make I have this error:<br>
/usr/bin/ld: cannot find -lz<br>
collect2: error: ld returned 1 exit status<br>
<br>
What is your suggestion?<br>
<br>
Thank you for your help.<br>
<span class="HOEnZb"><font color="#888888">Maria<br>
</font></span><div class="HOEnZb"><div class="h5"><br>
On 6/28/16, 5:14 PM, "Korobkin, Oleg" <<a href="mailto:korobkin@lanl.gov">korobkin@lanl.gov</a>> wrote:<br>
<br>
Maria,<br>
<br>
Looks like default g++ on your cluster is outdated. You can check the<br>
version by typing,<br>
$ g++ ‹-version<br>
<br>
Versions before 4.7.0 don¹t support the offending '‹std=gnu++11' flag. But<br>
the cluster certainly should have more recent compilers installed. Is<br>
there a link to the list of software available on biggreen? Try this<br>
command:<br>
$ module avail<br>
<br>
- this should list all the modules that are installed on your cluster,<br>
including more recent compilers. If any modules are present, they are<br>
probably called 'gcc/X.Y.Z' or 'gnu-compilers-X.Y.Z' and you can add the<br>
corresponding module like this:<br>
$ module load gcc/4.8.1<br>
<br>
Try adding this newer module and recompiling:<br>
$ make ET-config options=simfactory/mdb/optionlists/biggreen.cfg<br>
THORNLIST=manifest/<a href="http://einsteintoolkit.th" rel="noreferrer" target="_blank">einsteintoolkit.th</a><br>
<br>
<br>
All the best,<br>
- Oleg<br>
<br>
On 6/28/16, 11:59 AM, "<a href="mailto:users-bounces@einsteintoolkit.org">users-bounces@einsteintoolkit.org</a> on behalf of<br>
Hamilton, Maria" <<a href="mailto:users-bounces@einsteintoolkit.org">users-bounces@einsteintoolkit.org</a> on behalf of<br>
<a href="mailto:babiuc@marshall.edu">babiuc@marshall.edu</a>> wrote:<br>
<br>
>Hello,<br>
><br>
>I was wondering if I can get some help in compiling the Einstein Toolkit<br>
>on a cluster called BigGreen<br>
><a href="http://www.marshall.edu/itresearch/resources-and-tools/biggreen-cluster/" rel="noreferrer" target="_blank">http://www.marshall.edu/itresearch/resources-and-tools/biggreen-cluster/</a><br>
>I¹ve followed the instructions in<br>
><a href="https://docs.einsteintoolkit.org/et-docs/Compiling_the_Einstein_Toolkit" rel="noreferrer" target="_blank">https://docs.einsteintoolkit.org/et-docs/Compiling_the_Einstein_Toolkit</a><br>
>I¹ve created biggreen.marshall.edu.ini and biggreen.cfg, which are<br>
>attached to this message.<br>
>When I issued the commands:<br>
>simfactory/bin/sim setup --optionlist= biggreen.cfg --runscript<br>
>biggreen.sh<br>
>simfactory/bin/sim build --thornlist=manifest/<a href="http://einsteintoolkit.th" rel="noreferrer" target="_blank">einsteintoolkit.th</a><br>
>I get this error:<br>
>Cactus requires a C++11 compiler -- check your C++ compiler and C++<br>
>compiler flags<br>
><br>
>When I run:<br>
>make ET-config options=simfactory/mdb/optionlists/biggreen.cfg<br>
>THORNLIST=manifest/<a href="http://einsteintoolkit.th" rel="noreferrer" target="_blank">einsteintoolkit.th</a><br>
>I get this error:<br>
>checking whether the C++ compiler (g++ -g3 -march=native -std=gnu++11<br>
>-rdynamic) works... no<br>
>configure: error: installation or configuration problem: C++ compiler<br>
>cannot create executables (see<br>
>configs/<configname>/config-data/config.log for details).<br>
><br>
>I am attaching also the config.log.<br>
><br>
>Thank you,<br>
>Maria Babiuc<br>
><br>
<br>
<br>
<br>
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