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<div class="" style="word-wrap:break-word; line-break:after-white-space">Hi all,
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<div class="">I am trying to compile the Einstein toolkit on the SuperMUC-NG cluster but I am having some issues with the HDF5 libraries and I don’t understand whether it is a problem of the cluster itself or if there is any workaround that maybe some of you
know.</div>
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<div class="">I first this warning message when the CST is running on the HDF5 section:</div>
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<div class="">Running configuration script for thorn HDF5:</div>
<div class="">Additional requested language support: Fortran</div>
<div class="">WARNING in HDF5 configuration:</div>
<div class="">None of H5pubconf.h H5pubconf-64.h H5pubconf-32.h found in</div>
<div class="">Automatic detection of szip/zlib compression not possible</div>
<div class="">Finished running configuration script for thorn HDF5.</div>
<div class="">Checking consistency...</div>
<div class="">Creating Thorn-Flesh bindings...</div>
<div class=""> Creating implementation bindings...</div>
<div class=""> Creating parameter bindings...</div>
<div class=""> Creating variable bindings...</div>
<div class=""> Creating schedule bindings...</div>
<div class=""> Creating function bindings...</div>
<div class="">CST finished.</div>
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<div class="">********************************************************************************</div>
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<div class="">Then the compilation goes on until it fails when there’s the first call to the HDF5 library:</div>
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<div class="">dss/dsshome1/00/di39wog2/EinsteinToolkit/Cactus/arrangements/EinsteinAnalysis/AHFinderDirect/src/patch/<a href="http://patch_system.cc" class="">patch_system.cc</a>(87): catastrophic error: cannot open source file "hdf5.h"</div>
<div class=""> # include <hdf5.h></div>
<div class=""> ^</div>
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<div class="">/dss/dsshome1/00/di39wog2/EinsteinToolkit/Cactus/arrangements/EinsteinAnalysis/AHFinderDirect/src/patch/<a href="http://patch_system.cc" class="">patch_system.cc</a>(87): catastrophic error: cannot open source file "hdf5.h"</div>
<div class=""> # include <hdf5.h></div>
<div class=""> ^</div>
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<div class="">compilation aborted for /dss/dsshome1/00/di39wog2/EinsteinToolkit/Cactus/configs/ET_SUPERMUC_NG/build/AHFinderDirect/patch/<a href="http://patch_system.cc" class="">patch_system.cc</a> (code 4)</div>
<div class="">make[3]: *** [patch_system.cc.o] Error 4</div>
<div class="">make[2]: *** [patch/make.checked] Error 2</div>
<div class="">make[1]: *** [/dss/dsshome1/00/di39wog2/EinsteinToolkit/Cactus/configs/ET_SUPERMUC_NG/lib/libthorn_AHFinderDirect.a] Error 2</div>
<div class="">make: *** [ET_SUPERMUC_NG] Error 2</div>
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<div class="">********************************************************************************</div>
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<div class="">I attach here both log and error file of the compilation and my configuration script if you need it. I have already tried every possible hdf5 module they have on the cluster. They all lead to the same exact error. Please let me know if anything
else is needed.</div>
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Best regards,<br class="">
Giuseppe<br class="">
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