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Roland,</div>
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<br>
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That was it! Thank you!</div>
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<br>
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Your talk Yesterday was really useful. Will you please share the link where I can find the Jupyter notebook you presented? </div>
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For whatever reason, <span style="font-family: Calibri, Arial, Helvetica, sans-serif; background-color: rgb(255, 255, 255); display: inline !important">
from </span><a href="https://etk.cct.lsu.edu/" style="margin: 0px; font-family: Calibri, Arial, Helvetica, sans-serif; background-color: rgb(255, 255, 255)">https://etk.cct.lsu.edu/</a> I cannot access but 5 tutorials:</div>
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<p class="p1" style="margin: 0px; font: 12px "Helvetica Neue"; color: rgb(220, 161, 13)">
<a href="https://etk.cct.lsu.edu/user/babiuc/notebooks/CactusTutorial-08-2020.ipynb">CactusTutorial-08-2020.ipynb</a></p>
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<a href="https://etk.cct.lsu.edu/user/babiuc/notebooks/CactusTutorial.ipynb">CactusTutorial.ipynb</a></p>
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<a href="https://etk.cct.lsu.edu/user/babiuc/notebooks/CreatingANewThorn-HeatEqn.ipynb">CreatingANewThorn-HeatEqn.ipynb</a></p>
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<a href="https://etk.cct.lsu.edu/user/babiuc/notebooks/CreatingANewThorn-WaveEqn.ipynb">CreatingANewThorn-WaveEqn.ipynb</a></p>
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<a href="https://etk.cct.lsu.edu/user/babiuc/notebooks/VisualizingOutput-WaveMoL.ipynb">VisualizingOutput-WaveMoL.ipynb</a></p>
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thank you,</div>
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Maria</div>
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<div dir="ltr">_______________________</div>
<div dir="ltr"><i><font size="2">Maria C. Babiuc Hamilton, Ph.D.</font></i></div>
<div dir="ltr"><i><font size="2">Professor, Department of Physics </font></i></div>
<div dir="ltr"><i style="font-size:12pt"><font size="2"><i style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt"><font size="2"></font></i>College of Science, </font></i><i style="font-size:12pt"><font size="2">Marshall University,</font></i></div>
<div dir="ltr"><i><font size="2">1 John Marshall Drive, </font></i><i style="font-size:12pt"><font size="2">Huntington, WV, 25755</font></i></div>
<div dir="ltr"><i><font size="2"><i style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt"><font size="2"><i style="font-size:12pt"><font size="2">Room S 257, <span id="ms-rterangepaste-start"></span><i style="font-size:16px"><font size="2">Phone:
(304)696-2754</font></i></font></i></font></i><br>
</font></i></div>
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<br>
<hr tabindex="-1" style="display:inline-block; width:98%;">
<b>From:</b> Roland Haas<br>
<b>Sent:</b> Monday, August 3, 2020 12:09 PM<br>
<b>To:</b> Hamilton, Maria<br>
<b>Cc:</b> users@einsteintoolkit.org<br>
<b>Subject:</b> Re: [Users] Workshop
<div><br>
</div>
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<div class="PlainText">Hello Maria,<br>
<br>
looks like the gcc-10/gfortran-10 issue to me.<br>
<br>
Please note that if there is *any* gcc-10 installed then simfactory<br>
will pick it up and use it.<br>
<br>
(copied from responses of mine to the same question on the users<br>
mailing list earlier):<br>
<br>
--8<--<br>
Then please see here for a workaround:<br>
<br>
<a href="https://linkprotect.cudasvc.com/url?a=https%3a%2f%2fbitbucket.org%2feinsteintoolkit%2ftickets%2fissues%2f2403%2fcompile-failure-with-gfortran-10-when&c=E,1,aQMCtAsnGgFsA2Wb-KUDyiwL3VDDlFl2FelR5tRXr_R_P28fdnRlUM02DT2Ji3n54B4j_IErUJROaSSys3FT-WtOBsOL47AiNsbonrDfktBIiHBTkUfq2dWhdX0,&typo=1" target="_blank" rel="noopener noreferrer" data-auth="NotApplicable">https://linkprotect.cudasvc.com/url?a=https%3a%2f%2fbitbucket.org%2feinsteintoolkit%2ftickets%2fissues%2f2403%2fcompile-failure-with-gfortran-10-when&c=E,1,aQMCtAsnGgFsA2Wb-KUDyiwL3VDDlFl2FelR5tRXr_R_P28fdnRlUM02DT2Ji3n54B4j_IErUJROaSSys3FT-WtOBsOL47AiNsbonrDfktBIiHBTkUfq2dWhdX0,&typo=1</a><br>
<br>
<a href="https://linkprotect.cudasvc.com/url?a=https%3a%2f%2fbitbucket.org%2feinsteintoolkit%2ftickets%2fissues%2f2406%2fcactus-fails-to-link-with-gcc-10-due-to&c=E,1,lCfgA839oQxWadbXkLOxgqYmWvMg55Vy6trID6lKvI6Fm4ewncnHW-KbHuiyezJrf0L18GDmFxstRN2y8P4tMwzjJB3JB1iD9_rU0obBhVEoFIQpSK1t8rkndljx&typo=1" target="_blank" rel="noopener noreferrer" data-auth="NotApplicable">https://linkprotect.cudasvc.com/url?a=https%3a%2f%2fbitbucket.org%2feinsteintoolkit%2ftickets%2fissues%2f2406%2fcactus-fails-to-link-with-gcc-10-due-to&c=E,1,lCfgA839oQxWadbXkLOxgqYmWvMg55Vy6trID6lKvI6Fm4ewncnHW-KbHuiyezJrf0L18GDmFxstRN2y8P4tMwzjJB3JB1iD9_rU0obBhVEoFIQpSK1t8rkndljx&typo=1</a><br>
<br>
basically by adding -fcommon and -fallow-argument-mismatch to the<br>
compiler flags.<br>
<br>
The tutorial notebook<br>
<br>
<a href="https://github.com/nds-org/jupyter-et/blob/master/CactusTutorial.ipynb" target="_blank" rel="noopener noreferrer" data-auth="NotApplicable">https://github.com/nds-org/jupyter-et/blob/master/CactusTutorial.ipynb</a><br>
<br>
also contains information on the workaround.<br>
<br>
A proper fix is ready to be deployed to the released code but we were<br>
holding off until after the workshop to not accidentally introduce more<br>
(unknown) issues on top of the one for which we have a workaround.<br>
<br>
To fix this you can edit the file<br>
<br>
configs/sim/OptionList<br>
<br>
and also (the path might be a bit fuzzy):<br>
<br>
simfactory/mdb/optionlists/generic-mp-10.cfg<br>
<br>
and replace all gcc-10, g++-10 and gfortran-10 by the -9 flavors or by<br>
adding the -fXXX options that I had mentioned before.<br>
<br>
Afterwards you will have to run:<br>
<br>
simfactory/bin/sim build --reconfig<br>
<br>
which will instruct simfactory to update the build options using the<br>
values in configs/sim/OptionList .<br>
--8<--<br>
<br>
Yours,<br>
Roland<br>
<br>
> Hi,<br>
> <br>
> I have an error when running the commands from the Jupyter tutorial on my Mac laptop, on terminal:<br>
> ___<br>
> <br>
> <br>
> ------------------------------------------------------<br>
> <br>
> There was 1 error during execution of the CST<br>
> <br>
> This must be corrected before compilation can proceed<br>
> <br>
> ------------------------------------------------------<br>
> <br>
> <br>
> <br>
> <br>
> ------------------------------------------------------<br>
> <br>
> Warnings were generated during execution of the CST<br>
> <br>
> ------------------------------------------------------<br>
> <br>
> <br>
> <br>
> CST error 1:<br>
> <br>
> -> Configuration script for thorn LAPACK returned exit code 2 <br>
> <br>
> (no error message)<br>
> <br>
> <br>
> ------------------------------------------------------<br>
> <br>
> <br>
> make[1]: *** [/Users/babiuc/ETK2020/Cactus/configs/sim/config-data/make.thornlist] Error 1<br>
> <br>
> ___<br>
> <br>
> <br>
> When I am trying to run the commands from the Jupyter notebook, the error is in LoopControl:<br>
> ____<br>
> <br>
> COMPILING Carpet/LoopControl/src/type_sizes.F90<br>
> /Users/babiuc/ETK2020/Cactus/configs/sim/build/LoopControl/type_sizes.f90:57:33:<br>
> <br>
> 56 | type_sizes(1) = CCTK_PointerTo(vec(2)) - CCTK_PointerTo(vec(1))<br>
> | 2<br>
> 57 | type_sizes(2) = CCTK_PointerTo(space(2)) - CCTK_PointerTo(space(1))<br>
> | 1<br>
> Error: Type mismatch between actual argument at (1) and actual argument at (2) (TYPE(lc_space_t)/TYPE(lc_vec_t)).<br>
> /Users/babiuc/ETK2020/Cactus/configs/sim/build/LoopControl/type_sizes.f90:57:60:<br>
> <br>
> 56 | type_sizes(1) = CCTK_PointerTo(vec(2)) - CCTK_PointerTo(vec(1))<br>
> | 2<br>
> 57 | type_sizes(2) = CCTK_PointerTo(space(2)) - CCTK_PointerTo(space(1))<br>
> | 1<br>
> Error: Type mismatch between actual argument at (1) and actual argument at (2) (TYPE(lc_space_t)/TYPE(lc_vec_t)).<br>
> /Users/babiuc/ETK2020/Cactus/configs/sim/build/LoopControl/type_sizes.f90:58:33:<br>
> <br>
> 56 | type_sizes(1) = CCTK_PointerTo(vec(2)) - CCTK_PointerTo(vec(1))<br>
> | 2<br>
> 57 | type_sizes(2) = CCTK_PointerTo(space(2)) - CCTK_PointerTo(space(1))<br>
> 58 | type_sizes(3) = CCTK_PointerTo(control(2)) - CCTK_PointerTo(control(1))<br>
> | 1<br>
> Error: Type mismatch between actual argument at (1) and actual argument at (2) (TYPE(lc_control_t)/TYPE(lc_vec_t)).<br>
> /Users/babiuc/ETK2020/Cactus/configs/sim/build/LoopControl/type_sizes.f90:58:62:<br>
> <br>
> 56 | type_sizes(1) = CCTK_PointerTo(vec(2)) - CCTK_PointerTo(vec(1))<br>
> | 2<br>
> 57 | type_sizes(2) = CCTK_PointerTo(space(2)) - CCTK_PointerTo(space(1))<br>
> 58 | type_sizes(3) = CCTK_PointerTo(control(2)) - CCTK_PointerTo(control(1))<br>
> | 1<br>
> Error: Type mismatch between actual argument at (1) and actual argument at (2) (TYPE(lc_control_t)/TYPE(lc_vec_t)).<br>
> make[3]: *** [type_sizes.F90.o] Error 1<br>
> make[2]: *** [make.checked] Error 2<br>
> make[1]: *** [/Users/babiuc/ETK2020/Cactus/configs/sim/lib/libthorn_LoopControl.a] Error 2<br>
> make[1]: *** Waiting for unfinished jobs....<br>
> COMPILING configs/sim/bindings/build/SpaceMask/cctk_ThornBindings.c<br>
> Creating /Users/babiuc/ETK2020/Cactus/configs/sim/lib/libthorn_SpaceMask.a<br>
> make: *** [sim] Error 2<br>
> <br>
> ____<br>
> <br>
> This is with gcc-10.<br>
> <br>
> Maria<br>
> _______________________<br>
> Maria C. Babiuc Hamilton, Ph.D.<br>
> Professor, Department of Physics<br>
> College of Science, Marshall University,<br>
> 1 John Marshall Drive, Huntington, WV, 25755<br>
> Room S 257, Phone: (304)696-2754<br>
> <br>
> <br>
> ________________________________<br>
> From: users-bounces@einsteintoolkit.org <users-bounces@einsteintoolkit.org> on behalf of Roland Haas <rhaas@illinois.edu><br>
> Sent: Monday, August 3, 2020 10:02 AM<br>
> To: users@einsteintoolkit.org <users@einsteintoolkit.org><br>
> Subject: Re: [Users] Workshop<br>
> <br>
> Hello Bilal,<br>
> <br>
> > Dear Sir,<br>
> > Is the workshop started?<br>
> > any Link for the workshop? <br>
> <a href="https://lsu.zoom.us/j/92731656466" target="_blank" rel="noopener noreferrer" data-auth="NotApplicable">
https://lsu.zoom.us/j/92731656466</a><br>
> <br>
> Yours,<br>
> Roland<br>
> <br>
> --<br>
> My email is as private as my paper mail. I therefore support encrypting<br>
> and signing email messages. Get my PGP key from <a href="http://pgp.mit.edu" target="_blank" rel="noopener noreferrer" data-auth="NotApplicable">
http://pgp.mit.edu</a> .<br>
<br>
<br>
-- <br>
My email is as private as my paper mail. I therefore support encrypting<br>
and signing email messages. Get my PGP key from <a href="http://pgp.mit.edu" target="_blank" rel="noopener noreferrer" data-auth="NotApplicable">
http://pgp.mit.edu</a> .<br>
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