<div dir="ltr"><div class="gmail_default" style="color:#000000">Hi Steven,</div><div class="gmail_default" style="color:#000000"><br></div><div class="gmail_default" style="color:#000000">I used the generic Submitscript, no change in that. The Runscript is as follows:</div><div class="gmail_default" style="color:#000000"><br></div><div class="gmail_default" style=""><i style=""><font color="#a64d79">echo "Preparing:"<br>set -x # Output commands<br>set -e # Abort on errors<br>cd @RUNDIR@-active<br>echo "Checking:"<br>pwd<br>hostname<br>date<br>echo "Environment:"<br>module load /home2/mallick/ET/Cactus/openmpi-x86_64<br>export CACTUS_NUM_PROCS=@NUM_PROCS@<br>export CACTUS_NUM_THREADS=@NUM_THREADS@<br>export GMON_OUT_PREFIX=gmon.out<br>export OMP_NUM_THREADS=@NUM_THREADS@<br>env | sort > SIMFACTORY/ENVIRONMENT<br>echo "Starting:"<br>export CACTUS_STARTTIME=$(date +%s)<br>mpirun -np @NUM_PROCS@ @EXECUTABLE@ -L 3 @PARFILE@<br></font></i></div><div class="gmail_default" style=""><i><font color="#a64d79">echo "Stopping:"<br>date<br>echo "Done."<br></font></i></div><div><div dir="ltr" class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><font color="#666666"><br></font></div><div><span class="gmail_default" style="color:rgb(0,0,0)">I have attached these files here as well. All the output/error files are attached in my previous mail. </span></div><div><font color="#666666"><span class="gmail_default" style="color:rgb(0,0,0)"><br></span></font></div><div><font color="#666666"><span class="gmail_default" style="color:rgb(0,0,0)">Regards</span></font></div><div dir="ltr"><font color="#666666">Shamim Haque</font></div><div dir="ltr"><font color="#666666">Junior Research Fellow (JRF)<br></font><div><font color="#666666">Department of Physics</font></div><div><font color="#666666">IISER Bhopal</font></div></div></div></div></div></div></div></div></div></div><br></div><div hspace="streak-pt-mark" style="max-height:1px"><img alt="" style="width:0px;max-height:0px;overflow:hidden" src="https://mailfoogae.appspot.com/t?sender=ac2hhbWltc0BpaXNlcmIuYWMuaW4%3D&type=zerocontent&guid=1bfbface-450a-422e-bbc9-02ec895c8f53"><font color="#ffffff" size="1">ᐧ</font></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Thu, Aug 12, 2021 at 12:48 AM Steven R. Brandt <<a href="mailto:sbrandt@cct.lsu.edu">sbrandt@cct.lsu.edu</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div>
<p>What SubmitScript and RunScript are you using? Can you show us?
Thanks.</p>
<p>--Steve<br>
</p>
<div>On 8/10/2021 2:35 AM, Shamim Haque
wrote:<br>
</div>
<blockquote type="cite">
<div dir="ltr">
<div class="gmail_default" style="color:rgb(0,0,0)">Hello,</div>
<div class="gmail_default" style="color:rgb(0,0,0)"><br>
</div>
<div class="gmail_default" style="color:rgb(0,0,0)">I am trying to
run the BNS simulation on the cluster at IISER Bhopal. Upon
using 2 nodes (16x2 cores) my simulation stalled at this
message:</div>
<div class="gmail_default" style="color:rgb(0,0,0)"> </div>
<div class="gmail_default"><i><font color="#a64d79">The environment variable CACTUS_NUM_PROCS
is set to 32, but there are 1 MPI processes. This may
indicate a severe problem with the MPI startup mechanism.</font></i></div>
<i><font color="#a64d79">APPLICATION
TERMINATED WITH THE EXIT STRING: Aborted (signal 6)</font><br>
</i>
<div class="gmail_default" style="color:rgb(0,0,0)"><br>
</div>
<div class="gmail_default" style="color:rgb(0,0,0)">The command fed
into the simfactory via jobscript is as follows:</div>
<div class="gmail_default" style="color:rgb(0,0,0)"><br>
</div>
<div class="gmail_default"><font color="#a64d79"><i>time mpirun
/home2/mallick/ET/Cactus/simfactory/bin/sim create-submit
nsns30 --basedir=/home2/mallick/simulations --procs=32
--ppn=16 --num-threads=1 --num-smt=1 --ppn-used=16
--parfile
/home2/mallick/ET/Cactus/parfile/nsns_vlr_mass_diff.par
--walltime=24:00:00</i></font><i><b><font color="#a64d79"><br>
</font></b></i></div>
<div class="gmail_default" style="color:rgb(0,0,0)"><br>
</div>
<div class="gmail_default" style="color:rgb(0,0,0)">I could not
figure out the issue. I am also struggling with setting up the
machine scripts as per the cluster, so I am not sure if that
is somehow hampering the simulation.</div>
<div class="gmail_default" style="color:rgb(0,0,0)"><br>
</div>
<div class="gmail_default" style="color:rgb(0,0,0)">Thanks in
advance for helping me with this issue. I have attached the
concerned scripts and outputs for reference.</div>
<div class="gmail_default"><br>
</div>
<div class="gmail_default">Regards</div>
<div>
<div dir="ltr">
<div dir="ltr">
<div>
<div dir="ltr">
<div>
<div dir="ltr">
<div>
<div dir="ltr"><font color="#666666">Shamim
Haque</font></div>
<div dir="ltr"><font color="#666666">Junior
Research Fellow (JRF)<br>
</font>
<div><font color="#666666">Department of
Physics</font></div>
<div><font color="#666666">IISER Bhopal</font></div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
<div hspace="streak-pt-mark" style="max-height:1px"><img alt="" style="width: 0px; max-height: 0px; overflow: hidden;" src="https://mailfoogae.appspot.com/t?sender=ac2hhbWltc0BpaXNlcmIuYWMuaW4%3D&type=zerocontent&guid=5bdfad1e-6fb5-4b81-a67c-ba4f401869d6"><font size="1" color="#ffffff">ᐧ</font></div>
<br>
<fieldset></fieldset>
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