<div dir="ltr"><div class="gmail_default" style="color:#000000"><div id="m_-917516785223909597gmail-:1t1"><div id="m_-917516785223909597gmail-:1sx" aria-label="Message Body" role="textbox" aria-multiline="true" style="direction:ltr;min-height:423px" aria-controls=":1vt"><div class="gmail_default">Hello Roland,</div><div class="gmail_default"><br></div><div class="gmail_default">Thank you for the reply. </div><div class="gmail_default"><br></div><div class="gmail_default">I pointed -gxx-name to gcc/8.3.0, which resulted in an error related to the "icpc unable to checkout FLEXlm license". I also tried to use a different intel compiler (and point -gxx-name to gcc/11.1.0) to check if the error can go away, but it remains the same. I communicated this to the HPC admin and awaiting their response; please let me know if I should fix something in my configuration. I have attached the out file (intel_compile.out), config log (intel_config.log), and optionlist (intel.cfg) for reference.</div><div class="gmail_default"><br></div><div class="gmail_default">Meanwhile, I also attempted to configure ET with gcc/11.1.0, which resulted in some issues regarding the FFTW3. I have contacted the admins regarding this, but please let me know if it is something to be fixed within the optionlist. I have attached the out file (gcc_compile.out), config log (gcc_config.log), and optionlist (gcc.cfg) for reference.</div><div class="gmail_default"><br></div><div class="gmail_default">The error in the output file says the following:</div><div class="gmail_default"><font color="#a64d79"><i>Formaline: is still running, e.g. the final link stage.)<br>/usr/bin/ld: warning: libimf.so, needed by /home/apps/fftw3/fftw3.3.8/lib/libfftw3.so, not found (try using -rpath or -rpath-link)<br>/usr/bin/ld: warning: libsvml.so, needed by /home/apps/fftw3/fftw3.3.8/lib/libfftw3.so, not found (try using -rpath or -rpath-link)<br>/usr/bin/ld: warning: libirng.so, needed by /home/apps/fftw3/fftw3.3.8/lib/libfftw3.so, not found (try using -rpath or -rpath-link)<br>/usr/bin/ld: warning: libintlc.so.5, needed by /home/apps/fftw3/fftw3.3.8/lib/libfftw3.so, not found (try using -rpath or -rpath-link)<br>/usr/bin/ld: warning: libgfortran.so.3, needed by /lib/../lib64/liblapack.so, may conflict with libgfortran.so.5<br>/home/apps/fftw3/fftw3.3.8/lib/libfftw3.so: undefined reference to `__intel_cpu_features_init_x'<br>/home/apps/fftw3/fftw3.3.8/lib/libfftw3.so: undefined reference to `__svml_sincos2'<br>/home/apps/fftw3/fftw3.3.8/lib/libfftw3.so: undefined reference to `_intel_fast_memset'<br>/home/apps/fftw3/fftw3.3.8/lib/libfftw3.so: undefined reference to `__intel_cpu_feature_indicator_x'<br>/home/apps/fftw3/fftw3.3.8/lib/libfftw3.so: undefined reference to `_intel_fast_memmove'<br>/home/apps/fftw3/fftw3.3.8/lib/libfftw3.so: undefined reference to `_intel_fast_memcpy'</i></font><br></div><div class="gmail_default"><br></div><div class="gmail_default">Thanks in advance for all the help.</div><div class="gmail_default"><br></div><div class="gmail_default">Regards</div><div><div dir="ltr" class="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><font color="#666666">Shamim</font></div></div></div></div></div></div></div></div></div></div></div></div><br></div><div hspace="streak-pt-mark" style="max-height:1px"><img alt="" style="width:0px;max-height:0px;overflow:hidden" src="https://mailfoogae.appspot.com/t?sender=ac2hhbWltc0BpaXNlcmIuYWMuaW4%3D&type=zerocontent&guid=88eb92ad-a1fc-4b56-9b29-b296c2478f64"><font color="#ffffff" size="1">ᐧ</font></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Fri, Jun 2, 2023 at 1:31 AM Roland Haas <<a href="mailto:rhaas@illinois.edu" target="_blank">rhaas@illinois.edu</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">Hello Shamim Haque,<br>
<br>
This most likely is caused by not having a full C++11 software stack<br>
enabled.<br>
<br>
The Intel compiler always uses the C++ STL library of the GNU g++<br>
compiler and must be matched up with a compatible g++ compiler's STL<br>
to correctly support C++11. <br>
<br>
This ticket (the last of many, hopefully) contains details:<br>
<br>
<a href="https://bitbucket.org/einsteintoolkit/tickets/issues/2663/add-an-notice-about-minimum-intel-gcc" rel="noreferrer" target="_blank">https://bitbucket.org/einsteintoolkit/tickets/issues/2663/add-an-notice-about-minimum-intel-gcc</a><br>
<br>
Basically, the fix is to find a gcc compiler at least version 6 on your<br>
cluster, then pass the option<br>
<br>
-gxx-name PATH-TO-GXX<br>
<br>
to icpc in the CXXFLAGS option list variable (see eg<br>
<a href="https://bitbucket.org/simfactory/simfactory2/src/7e2592d264b1afe9ca2cb54bcab8dd9e4165cf98/mdb/optionlists/smic-openmpi.cfg?at=master#smic-openmpi.cfg-15:16" rel="noreferrer" target="_blank">https://bitbucket.org/simfactory/simfactory2/src/7e2592d264b1afe9ca2cb54bcab8dd9e4165cf98/mdb/optionlists/smic-openmpi.cfg?at=master#smic-openmpi.cfg-15:16</a>).<br>
<br>
If there is no gcc compiler version 6 or newer installed in the system,<br>
you will have to contact the administrators and ask them about it.<br>
<br>
The demo code in the description of<br>
<a href="https://bitbucket.org/cactuscode/cactus/pull-requests/152" rel="noreferrer" target="_blank">https://bitbucket.org/cactuscode/cactus/pull-requests/152</a> may help<br>
demonstrate to the admins what the issue is.<br>
<br>
Yours,<br>
Roland<br>
<br>
> Hello All,<br>
> <br>
> I have made little progress on compiling ETK on this cluster, as the admins<br>
> allowed me to compile ETK on the login node. I am finding new errors and am<br>
> unable to debug the issue. I am trying to configure ETK using Intel19, and<br>
> the error says the following:<br>
> <br>
> <br>
> <br>
> <br>
> <br>
> <br>
> <br>
> <br>
> <br>
> <br>
> <br>
> */home/shamims.iiserb/ET_debug/Cactus/arrangements/Carpet/CarpetMask/src/mask_surface.cc(160):<br>
> error: more than one instance of overloaded function "CarpetMask::isnan"<br>
> matches the argument list: function "isnan(double)"<br>
> function "std::isnan(double)" argument types are: (CCTK_REAL8)<br>
> assert(not isnan(phi)); ^compilation aborted for<br>
> /home/shamims.iiserb/ET_debug/Cactus/configs/sim/build/CarpetMask/mask_surface.cc<br>
> (code 2)make[3]: *** [mask_surface.cc.o] Error 2make[2]: *** [make.checked]<br>
> Error 2make[1]: ***<br>
> [/home/shamims.iiserb/ET_debug/Cactus/configs/sim/lib/libthorn_CarpetMask.a]<br>
> Error 2make: *** [sim] Error 2*<br>
> <br>
> I have attached the machinefile, optionlist, config log and full output<br>
> file for reference. I configured the scripts using the available example<br>
> optionlist and machinefile for supermuc_ng and stampede2. Please let me<br>
> know if more info is required, and thanks in advance for your help.<br>
> <br>
> Regards<br>
> Shamim Haque<br>
> Senior Research Fellow (SRF)<br>
> Department of Physics<br>
> IISER Bhopal<br>
> <br>
> ᐧ<br>
> <br>
> On Fri, May 19, 2023 at 2:32 PM Shamim Haque 1910511 <<a href="mailto:shamims@iiserb.ac.in" target="_blank">shamims@iiserb.ac.in</a>><br>
> wrote:<br>
> <br>
> > Hello Roland,<br>
> ><br>
> > Thank you for the reply. Yes, I am trying to compile ETK in the computing<br>
> > node via sbatch queue. I am in touch with the system admin to resolve<br>
> > the issue with the compilers.<br>
> ><br>
> > Regards<br>
> > Shamim Haque<br>
> > Senior Research Fellow (SRF)<br>
> > Department of Physics<br>
> > IISER Bhopal<br>
> ><br>
> > ᐧ<br>
> ><br>
> > On Thu, May 18, 2023 at 7:32 PM Roland Haas <<a href="mailto:rhaas@illinois.edu" target="_blank">rhaas@illinois.edu</a>> wrote:<br>
> > <br>
> >> Hello Shamin,<br>
> >><br>
> >> A missing math.h would point to a faulty compiler installation. Since<br>
> >> you are trying to compile (are you?) ona compute node in a running job,<br>
> >> my guess would be that the cluster admins are not providing compilers<br>
> >> on the compute nodes but only on the login nodes.<br>
> >><br>
> >> This would be something to contact your cluster's help desk about.<br>
> >><br>
> >> Yours,<br>
> >> Roland<br>
> >> <br>
> >> > Hello Roland,<br>
> >> ><br>
> >> > I did try that fix; the error remains the same. Actually, we landed on <br>
> >> an <br>
> >> > even more primitive problem, where Steve suggested a basic test, that <br>
> >> is to <br>
> >> > compile the following code:<br>
> >> ><br>
> >> ><br>
> >> ><br>
> >> ><br>
> >> ><br>
> >> ><br>
> >> ><br>
> >> > *#include <math.h>#include <stdio.h>int main() { printf("%f\n",<br>
> >> > M_PI); return 0;}*<br>
> >> ><br>
> >> > This program compiles just fine in the login node but gives out the<br>
> >> > following error while compiling it via jobscript submission in the <br>
> >> sbatch <br>
> >> > queue:<br>
> >> ><br>
> >> > prog.cpp:1:18: fatal error: math.h: No such file or directory<br>
> >> > #include <math.h><br>
> >> > ^<br>
> >> > compilation terminated.<br>
> >> ><br>
> >> > ----OR-----<br>
> >> ><br>
> >> > <br>
> >> /home/apps/gcc-10.2.0/include/c++/10.2.0/x86_64-pc-linux-gnu/bits/os_defines.h:39:10: <br>
> >> > fatal error: features.h: No such file or directory<br>
> >> > 39 | #include <features.h><br>
> >> > | ^~~~~~~~~~~~<br>
> >> > compilation terminated.<br>
> >> ><br>
> >> > I have reported this problem to the HPC admin and await their response.<br>
> >> ><br>
> >> > Regards<br>
> >> > Shamim Haque<br>
> >> > Senior Research Fellow (SRF)<br>
> >> > Department of Physics<br>
> >> > IISER Bhopal<br>
> >> ><br>
> >> > ᐧ<br>
> >> ><br>
> >> > On Fri, May 12, 2023 at 12:20 AM Roland Haas <<a href="mailto:rhaas@illinois.edu" target="_blank">rhaas@illinois.edu</a>> <br>
> >> wrote: <br>
> >> > <br>
> >> > > Hello all,<br>
> >> > ><br>
> >> > > Since the error is a missing M_PI and the configure script already<br>
> >> > > gives a suggested fix:<br>
> >> > ><br>
> >> > > Try adding -D_XOPEN_SOURCE to CPPFLAGS.<br>
> >> > ><br>
> >> > > have you tried adding:<br>
> >> > ><br>
> >> > > CPPFLAGS=-D_XOPEN_SOURCE<br>
> >> > ><br>
> >> > > to your option list file before compiling?<br>
> >> > ><br>
> >> > > Yours,<br>
> >> > > Roland<br>
> >> > > <br>
> >> > > > Thanks Steve. I have raised complaint to the admin about this issue.<br>
> >> > > ><br>
> >> > > > On Thu, May 11, 2023, 11:18 PM Steven R. Brandt < <br>
> >> <a href="mailto:sbrandt@cct.lsu.edu" target="_blank">sbrandt@cct.lsu.edu</a>> <br>
> >> > > wrote: <br>
> >> > > > <br>
> >> > > > > I would talk to the system administrators about that. There is <br>
> >> > > definitely <br>
> >> > > > > something wrong with your compiler install if you can't find <br>
> >> math.h. <br>
> >> > > > ><br>
> >> > > > > --Steve<br>
> >> > > > > On 5/11/2023 2:02 AM, Shamim Haque 1910511 wrote:<br>
> >> > > > ><br>
> >> > > > > Dear Steve,<br>
> >> > > > ><br>
> >> > > > > I just rechecked the cpp program to output M_PI in the computing <br>
> >> nodes, <br>
> >> > > > > and that is not working right now, which was somehow working fine <br>
> >> a few <br>
> >> > > > > days ago. I also tried different gcc versions (4.8, 10.2, 11.1, <br>
> >> > > gnu8/8.3) <br>
> >> > > > > available in the cluster. All report similar issue:<br>
> >> > > > ><br>
> >> > > > > prog.cpp:1:18: fatal error: math.h: No such file or directory<br>
> >> > > > > #include <math.h><br>
> >> > > > > ^<br>
> >> > > > > compilation terminated.<br>
> >> > > > ><br>
> >> > > > > ----OR-----<br>
> >> > > > ><br>
> >> > > > > <br>
> >> > > <br>
> >> /home/apps/gcc-10.2.0/include/c++/10.2.0/x86_64-pc-linux-gnu/bits/os_defines.h:39:10:<br>
> >> <br>
> >> > > > > fatal error: features.h: No such file or directory<br>
> >> > > > > 39 | #include <features.h><br>
> >> > > > > | ^~~~~~~~~~~~<br>
> >> > > > > compilation terminated.<br>
> >> > > > ><br>
> >> > > > > The cpp code seems to work fine in login node, as it gives out <br>
> >> the <br>
> >> > > value <br>
> >> > > > > of pi upon execution. I am contacting the hpc admin to resolve <br>
> >> this <br>
> >> > > issue. <br>
> >> > > > ><br>
> >> > > > > I am attaching the test code (prog.cpp), the sbatch jobscript <br>
> >> (prog.sh) <br>
> >> > > > > and the output file (slurn-117473.out), if you would like to have <br>
> >> a <br>
> >> > > look at <br>
> >> > > > > it.<br>
> >> > > > ><br>
> >> > > > > Please let me know if I should try something different to get <br>
> >> this <br>
> >> > > working. <br>
> >> > > > ><br>
> >> > > > > Regards<br>
> >> > > > > Shamim Haque<br>
> >> > > > > Senior Research Fellow (SRF)<br>
> >> > > > > Department of Physics<br>
> >> > > > > IISER Bhopal<br>
> >> > > > ><br>
> >> > > > > ᐧ<br>
> >> > > > ><br>
> >> > > > > On Mon, May 8, 2023 at 7:25 PM Shamim Haque 1910511 < <br>
> >> > > <a href="mailto:shamims@iiserb.ac.in" target="_blank">shamims@iiserb.ac.in</a>> <br>
> >> > > > > wrote:<br>
> >> > > > > <br>
> >> > > > >> Thanks Steve. I'll make the changes and try again. I'll let you <br>
> >> know <br>
> >> > > the <br>
> >> > > > >> outcome.<br>
> >> > > > >><br>
> >> > > > >> Regards<br>
> >> > > > >> Shamim Haque<br>
> >> > > > >> Senior Research Fellow (SRF)<br>
> >> > > > >> Department of Physics<br>
> >> > > > >> IISER Bhopal<br>
> >> > > > >><br>
> >> > > > >> ᐧ<br>
> >> > > > >><br>
> >> > > > >> On Mon, May 8, 2023 at 7:21 PM Steven R. Brandt < <br>
> >> <a href="mailto:sbrandt@cct.lsu.edu" target="_blank">sbrandt@cct.lsu.edu</a>> <br>
> >> > > > >> wrote:<br>
> >> > > > >> <br>
> >> > > > >>> That tends to make me think you aren't using the compiler you <br>
> >> think <br>
> >> > > > >>> you're using. You could put full paths in the .cfg files and <br>
> >> > > recompile from <br>
> >> > > > >>> scratch.<br>
> >> > > > >>><br>
> >> > > > >>> i.e.<br>
> >> > > > >>><br>
> >> > > > >>> CXX = /full/path/to/icc<br>
> >> > > > >>><br>
> >> > > > >>> --Steve<br>
> >> > > > >>> On 5/3/2023 3:26 PM, Shamim Haque 1910511 wrote:<br>
> >> > > > >>><br>
> >> > > > >>> Yes, this gives the value of Pi successfully, before starting <br>
> >> the <br>
> >> > > > >>> compilation:<br>
> >> > > > >>><br>
> >> > > > >>><br>
> >> > > > >>><br>
> >> > > > >>><br>
> >> > > > >>><br>
> >> > > > >>><br>
> >> > > > >>><br>
> >> > > > >>><br>
> >> > > > >>><br>
> >> > > > >>> */home/vkerni.iitr/sam/trial 3.141593 Current machine: <br>
> >> paramganga3 <br>
> >> > > Using <br>
> >> > > > >>> configuration: sim Reconfiguring sim Writing configuration to:<br>
> >> > > > >>> /home/vkerni.iitr/sam/ET_debug/Cactus/configs/sim/OptionList <br>
> >> Cactus - <br>
> >> > > > >>> version: 4.12.0 Reconfiguring sim. *<br>
> >> > > > >>> *.*<br>
> >> > > > >>> *.*<br>
> >> > > > >>> *.*<br>
> >> > > > >>><br>
> >> > > > >>><br>
> >> > > > >>><br>
> >> > > > >>><br>
> >> > > > >>><br>
> >> > > > >>> *checking for M_PI... no configure: error: M_PI not defined. <br>
> >> Try <br>
> >> > > adding <br>
> >> > > > >>> -D_XOPEN_SOURCE to CPPFLAGS. Error reconfiguring sim-config <br>
> >> make: *** <br>
> >> > > > >>> [sim-config] Error 2 *<br>
> >> > > > >>><br>
> >> > > > >>><br>
> >> > > > >>> Shamim Haque<br>
> >> > > > >>> Senior Research Fellow (SRF)<br>
> >> > > > >>> Department of Physics<br>
> >> > > > >>> IISER Bhopal<br>
> >> > > > >>><br>
> >> > > > >>> ᐧ<br>
> >> > > > >>><br>
> >> > > > >>> On Thu, May 4, 2023 at 12:29 AM Steven Brandt < <br>
> >> <a href="mailto:sbrandt@cct.lsu.edu" target="_blank">sbrandt@cct.lsu.edu</a>> <br>
> >> > > > >>> wrote:<br>
> >> > > > >>> <br>
> >> > > > >>>> So, sanity check, can you compile the following program <br>
> >> outside of <br>
> >> > > > >>>> Cactus?<br>
> >> > > > >>>><br>
> >> > > > >>>> #include <math.h><br>
> >> > > > >>>> #include <stdio.h><br>
> >> > > > >>>><br>
> >> > > > >>>> int main() {<br>
> >> > > > >>>> printf("%f\n", M_PI);<br>
> >> > > > >>>> return 0;<br>
> >> > > > >>>> }<br>
> >> > > > >>>> On 5/3/2023 1:50 PM, Shamim Haque 1910511 wrote:<br>
> >> > > > >>>><br>
> >> > > > >>>> Dear Steve,<br>
> >> > > > >>>><br>
> >> > > > >>>> I tried gcc (10 and 11) as well and I am stuck with the <br>
> >> following <br>
> >> > > error: <br>
> >> > > > >>>> *configure: error: M_PI not defined. Try adding <br>
> >> -D_XOPEN_SOURCE to <br>
> >> > > > >>>> CPPFLAGS.*<br>
> >> > > > >>>><br>
> >> > > > >>>> This also happened for Intel (2020 and 2019). I have attached <br>
> >> both <br>
> >> > > the <br>
> >> > > > >>>> output files here.<br>
> >> > > > >>>><br>
> >> > > > >>>> Please ignore the out file in the first email, I have <br>
> >> uploaded <br>
> >> > > another <br>
> >> > > > >>>> out file by mistake. The rest of the files are correct in the <br>
> >> first <br>
> >> > > mail. <br>
> >> > > > >>>><br>
> >> > > > >>>> Regards<br>
> >> > > > >>>> Shamim Haque<br>
> >> > > > >>>> Senior Research Fellow (SRF)<br>
> >> > > > >>>> Department of Physics<br>
> >> > > > >>>> IISER Bhopal<br>
> >> > > > >>>><br>
> >> > > > >>>> ᐧ<br>
> >> > > > >>>><br>
> >> > > > >>>> On Wed, May 3, 2023 at 8:04 PM Steven Brandt < <br>
> >> <a href="mailto:sbrandt@cct.lsu.edu" target="_blank">sbrandt@cct.lsu.edu</a>> <br>
> >> > > > >>>> wrote:<br>
> >> > > > >>>> <br>
> >> > > > >>>>> I notice from the output that your compiler claims "limits.h" <br>
> >> is <br>
> >> > > > >>>>> missing. Possibly there's something wrong with your icc <br>
> >> setup? <br>
> >> > > Maybe you <br>
> >> > > > >>>>> should try using gcc / gfortran instead.<br>
> >> > > > >>>>><br>
> >> > > > >>>>> --Steve<br>
> >> > > > >>>>> On 5/3/2023 8:20 AM, Shamim Haque 1910511 wrote:<br>
> >> > > > >>>>><br>
> >> > > > >>>>> Dear Frank,<br>
> >> > > > >>>>><br>
> >> > > > >>>>> I added the alias pattern for the computing nodes and now ETK <br>
> >> can <br>
> >> > > > >>>>> detect the cluster (checked by asking "whoami") during the <br>
> >> batch <br>
> >> > > queuing. <br>
> >> > > > >>>>> I'll get in touch with the admins to include 'patch'.<br>
> >> > > > >>>>><br>
> >> > > > >>>>> However, the problem still persists, having assured that the <br>
> >> > > correct <br>
> >> > > > >>>>> machine file and option list are being used during the <br>
> >> compilation. <br>
> >> > > > >>>>><br>
> >> > > > >>>>> Regards<br>
> >> > > > >>>>> Shamim Haque<br>
> >> > > > >>>>> Senior Research Fellow (SRF)<br>
> >> > > > >>>>> Department of Physics<br>
> >> > > > >>>>> IISER Bhopal<br>
> >> > > > >>>>><br>
> >> > > > >>>>> ᐧ<br>
> >> > > > >>>>><br>
> >> > > > >>>>> On Wed, May 3, 2023 at 3:49 PM Frank Loeffler <<br>
> >> > > > >>>>> <a href="mailto:frank.loeffler@uni-jena.de" target="_blank">frank.loeffler@uni-jena.de</a>> wrote:<br>
> >> > > > >>>>> <br>
> >> > > > >>>>>> Hi Shamim<br>
> >> > > > >>>>>><br>
> >> > > > >>>>>> On Wed, May 03, 2023 at 03:11:49PM +0530, Shamim Haque <br>
> >> 1910511 <br>
> >> > > wrote: <br>
> >> > > > >>>>>> >We are trying to compile ETK on ParamGanga at IIT Roorkee. <br>
> >> The <br>
> >> > > > >>>>>> >compilation<br>
> >> > > > >>>>>> >stops at a very initial step and gives out the error:<br>
> >> > > > >>>>>> ><br>
> >> > > > >>>>>> >*checking whether the Fortran compiler (gfortran ) <br>
> >> works... <br>
> >> > > > >>>>>> yeschecking <br>
> >> > > > >>>>>> >whether the Fortran compiler (gfortran ) is a <br>
> >> > > cross-compiler... <br>
> >> > > > >>>>>> nochecking <br>
> >> > > > >>>>>> >whether the Fortran compiler (gfortran ) supports TYPE(*) <br>
> >> for <br>
> >> > > > >>>>>> >CCTK_PointerTo... yeschecking how to run the C <br>
> >> preprocessor... <br>
> >> > > > >>>>>> cppchecking <br>
> >> > > > >>>>>> >for ANSI C header files... nochecking for C99 features... <br>
> >> > > > >>>>>> yeschecking for <br>
> >> > > > >>>>>> >M_PI... noconfigure: error: M_PI not defined. Try adding <br>
> >> > > > >>>>>> -D_XOPEN_SOURCE to <br>
> >> > > > >>>>>> >CPPFLAGS.*<br>
> >> > > > >>>>>> ><br>
> >> > > > >>>>>> >We tried adding -D_XOPEN_SOURCE to CPPFLAGS, but it does <br>
> >> not <br>
> >> > > help. <br>
> >> > > > >>>>>> This <br>
> >> > > > >>>>>> >error is consistent if we set up using Intel Compiler (2020 <br>
> >> or <br>
> >> > > > >>>>>> 2019), or <br>
> >> > > > >>>>>> >gcc (11 or 10). I have attached the outfile, error file, <br>
> >> > > machine <br>
> >> > > > >>>>>> script, <br>
> >> > > > >>>>>> >and option lists for both cases (Intel and gcc) for any <br>
> >> > > reference. <br>
> >> > > > >>>>>> ><br>
> >> > > > >>>>>> >Secondly, we are not allowed to compile ETK on login nodes. <br>
> >> So <br>
> >> > > we are <br>
> >> > > > >>>>>> >queuing a job script, which upon execution, enters the <br>
> >> Cactus <br>
> >> > > > >>>>>> directory, <br>
> >> > > > >>>>>> >does "setup-silent", and then executes the build command. <br>
> >> Is <br>
> >> > > this <br>
> >> > > > >>>>>> the right <br>
> >> > > > >>>>>> >way to compile ETK using the batch script? Or should we do <br>
> >> > > something <br>
> >> > > > >>>>>> >different? I have attached the shell script (compile.sh) <br>
> >> used <br>
> >> > > for <br>
> >> > > > >>>>>> sbatch <br>
> >> > > > >>>>>> >queue for reference. <br>
> >> > > > >>>>>><br>
> >> > > > >>>>>> I might be wrong, but setup-silent will not use your machine <br>
> >> file <br>
> >> > > > >>>>>> which<br>
> >> > > > >>>>>> contains all the compiler flags, but will setup something <br>
> >> "from <br>
> >> > > > >>>>>> scratch"<br>
> >> > > > >>>>>> instead. According to the logs, this will be, e.g., in<br>
> >> > > > >>>>>><br>
> >> > > > >>>>>><br>
> >> > > > >>>>>> <br>
> >> > > <br>
> >> /home/shamims.iiserb/ET_debug/Cactus/repos/simfactory2/mdb/machines/cn139.iitr.ac.in.ini<br>
> >> <br>
> >> > > > >>>>>><br>
> >> > > > >>>>>> My guess would be that this misses the compiler flags <br>
> >> necessary to <br>
> >> > > > >>>>>> have<br>
> >> > > > >>>>>> M_PI defined. The best way to get this working might be to <br>
> >> let <br>
> >> > > > >>>>>> simfactory also detect the cluster configuration on the <br>
> >> compute <br>
> >> > > nodes <br>
> >> > > > >>>>>> (where you compile), such that setup-silent is not needed, <br>
> >> but <br>
> >> > > > >>>>>> instead<br>
> >> > > > >>>>>> the correct cluster configuration is found and used <br>
> >> > > automatically. In <br>
> >> > > > >>>>>> order to do that, look at examples of 'aliaspattern' in the<br>
> >> > > > >>>>>> mdb/machines<br>
> >> > > > >>>>>> directory. An alternative would be to tell simfactory <br>
> >> specifically <br>
> >> > > > >>>>>> that<br>
> >> > > > >>>>>> you want to use your machine configuration file.<br>
> >> > > > >>>>>><br>
> >> > > > >>>>>> As a side-note: I noticed the command 'patch' is missing <br>
> >> too. <br>
> >> > > This is <br>
> >> > > > >>>>>> a<br>
> >> > > > >>>>>> tool so common that it should be installed everywhere. Your <br>
> >> admin <br>
> >> > > is <br>
> >> > > > >>>>>> probably the best person to ask for advise here. It should <br>
> >> not be <br>
> >> > > too <br>
> >> > > > >>>>>> hard to install yourself, but that should not be necessary <br>
> >> either, <br>
> >> > > > >>>>>> especially when you are told to compile on compute nodes.<br>
> >> > > > >>>>>><br>
> >> > > > >>>>>> Frank<br>
> >> > > > >>>>>><br>
> >> > > > >>>>>> <br>
> >> > > > >>>>> _______________________________________________<br>
> >> > > > >>>>> Users mailing listUsers@einsteintoolkit.orghttp:// <br>
> >> > > <a href="http://lists.einsteintoolkit.org/mailman/listinfo/users" rel="noreferrer" target="_blank">lists.einsteintoolkit.org/mailman/listinfo/users</a> <br>
> >> > > > >>>>><br>
> >> > > > >>>>> _______________________________________________<br>
> >> > > > >>>>> Users mailing list<br>
> >> > > > >>>>> <a href="mailto:Users@einsteintoolkit.org" target="_blank">Users@einsteintoolkit.org</a><br>
> >> > > > >>>>> <br>
> >> > > <br>
> >> <a href="https://urldefense.com/v3/__http://lists.einsteintoolkit.org/mailman/listinfo/users__;!!DZ3fjg!4xAKSrBYUo_v8jHEbenNg6aQ99Oq9QyeXsjq766lVDVwHAhFJODYjSU6XryKp264bQqDmBcTIA4Srkc4wOCn$" rel="noreferrer" target="_blank">https://urldefense.com/v3/__http://lists.einsteintoolkit.org/mailman/listinfo/users__;!!DZ3fjg!4xAKSrBYUo_v8jHEbenNg6aQ99Oq9QyeXsjq766lVDVwHAhFJODYjSU6XryKp264bQqDmBcTIA4Srkc4wOCn$</a><br>
> >> <br>
> >> > > > >>>>> <br>
> >> > > > >>>> <br>
> >> > ><br>
> >> > ><br>
> >> > > Yours,<br>
> >> > > Roland<br>
> >> > ><br>
> >> > > --<br>
> >> > > My email is as private as my paper mail. I therefore support <br>
> >> encrypting <br>
> >> > > and signing email messages. Get my PGP key from <br>
> >> <a href="https://urldefense.com/v3/__http://pgp.mit.edu__;!!DZ3fjg!5ZGhPGL_16Uj1eN8xbeLFN1po4t2MOETlRoEnO3fr4pBXNdsn_VXBbuywp1tgk0zKYy_oBKphC1Ny-KY0Vh9$" rel="noreferrer" target="_blank">https://urldefense.com/v3/__http://pgp.mit.edu__;!!DZ3fjg!5ZGhPGL_16Uj1eN8xbeLFN1po4t2MOETlRoEnO3fr4pBXNdsn_VXBbuywp1tgk0zKYy_oBKphC1Ny-KY0Vh9$</a><br>
> >> . <br>
> >> > > <br>
> >><br>
> >> --<br>
> >> My email is as private as my paper mail. I therefore support encrypting<br>
> >> and signing email messages. Get my PGP key from <a href="https://urldefense.com/v3/__http://pgp.mit.edu__;!!DZ3fjg!9Rc70AgC5_rUJApjF6bdaoR4iJf6WXHxF1UsHWThqJwM8QxTwHKDWcVgn0kphw4Lmahcfk5a8gMIPSpV8TMD$" rel="noreferrer" target="_blank">https://urldefense.com/v3/__http://pgp.mit.edu__;!!DZ3fjg!9Rc70AgC5_rUJApjF6bdaoR4iJf6WXHxF1UsHWThqJwM8QxTwHKDWcVgn0kphw4Lmahcfk5a8gMIPSpV8TMD$</a> .<br>
> >> <br>
> > <br>
<br>
<br>
-- <br>
My email is as private as my paper mail. I therefore support encrypting<br>
and signing email messages. Get my PGP key from <a href="http://pgp.mit.edu" rel="noreferrer" target="_blank">http://pgp.mit.edu</a> .<br>
</blockquote></div>