<div dir="ltr"><div class="gmail_default" style="font-family:monospace;font-size:small">Dear Iosif,</div><div class="gmail_default" style="font-family:monospace;font-size:small"><br></div><div class="gmail_default" style="font-family:monospace;font-size:small">I hope this message finds you well.</div><div class="gmail_default" style="font-family:monospace;font-size:small"><br></div><div class="gmail_default" style="font-family:monospace;font-size:small">I'm not sure you already got a reply, but in case you haven't, my understanding is that placeholders like @FOO@ are there to indicate things you need to change yourself, manually.</div><div class="gmail_default" style="font-family:monospace;font-size:small"><br></div><div class="gmail_default" style="font-family:monospace;font-size:small">So when you see something like:</div><div class="gmail_default" style="font-family:monospace;font-size:small"><br></div><div class="gmail_default" style="font-family:monospace;font-size:small">#SBATCH -A <a class="gmail_plusreply" id="plusReplyChip-1">@ALLOCATION@</a></div><div class="gmail_default" style="font-family:monospace;font-size:small"><br></div><div class="gmail_default" style="font-family:monospace;font-size:small">then it means you should replace @ALLOCATION@ with the name of your allocation in the specific cluster.</div><div class="gmail_default" style="font-family:monospace;font-size:small"><br></div><div class="gmail_default" style="font-family:monospace;font-size:small">Someone else can correct me if this is not correct, but that's how I usually handle these.</div><div class="gmail_default" style="font-family:monospace;font-size:small"><br></div><div class="gmail_default" style="font-family:monospace;font-size:small">Cheers,</div><div class="gmail_default" style="font-family:monospace;font-size:small">Leo<br><a class="gmail_plusreply"><br></a></div></div><br><div class="gmail_quote gmail_quote_container"><div dir="ltr" class="gmail_attr">On Fri, Jul 25, 2025 at 8:06 AM <<a href="mailto:users-request@einsteintoolkit.org">users-request@einsteintoolkit.org</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">Send Users mailing list submissions to<br>
<a href="mailto:users@einsteintoolkit.org" target="_blank">users@einsteintoolkit.org</a><br>
<br>
To subscribe or unsubscribe via the World Wide Web, visit<br>
<a href="http://lists.einsteintoolkit.org/mailman/listinfo/users" rel="noreferrer" target="_blank">http://lists.einsteintoolkit.org/mailman/listinfo/users</a><br>
or, via email, send a message with subject or body 'help' to<br>
<a href="mailto:users-request@einsteintoolkit.org" target="_blank">users-request@einsteintoolkit.org</a><br>
<br>
You can reach the person managing the list at<br>
<a href="mailto:users-owner@einsteintoolkit.org" target="_blank">users-owner@einsteintoolkit.org</a><br>
<br>
When replying, please edit your Subject line so it is more specific<br>
than "Re: Contents of Users digest..."<br>
<br>
<br>
Today's Topics:<br>
<br>
1. SimFactory placeholder macros (IOSIF PANAGIOTIS)<br>
2. Issue with ReadInterpolate (Luciano Combi)<br>
<br>
<br>
----------------------------------------------------------------------<br>
<br>
Message: 1<br>
Date: Fri, 25 Jul 2025 10:43:36 +0000<br>
From: IOSIF PANAGIOTIS <<a href="mailto:PANAGIOTIS.IOSIF@units.it" target="_blank">PANAGIOTIS.IOSIF@units.it</a>><br>
To: Einstein Toolkit Users <<a href="mailto:users@einsteintoolkit.org" target="_blank">users@einsteintoolkit.org</a>><br>
Subject: [Users] SimFactory placeholder macros<br>
Message-ID:<br>
<<a href="mailto:AS8P250MB08637A69A316C8763E533B5FF959A@AS8P250MB0863.EURP250.PROD.OUTLOOK.COM" target="_blank">AS8P250MB08637A69A316C8763E533B5FF959A@AS8P250MB0863.EURP250.PROD.OUTLOOK.COM</a>><br>
<br>
Content-Type: text/plain; charset="iso-8859-1"<br>
<br>
Hi,<br>
<br>
I have been following this document, <a href="https://einsteintoolkit.org/seminars/2022_02_24/index.html" rel="noreferrer" target="_blank">https://einsteintoolkit.org/seminars/2022_02_24/index.html</a> , to set up ET on my cluster, working also on some example configuration files.<br>
<br>
While preparing the submit and run scripts, I wanted to check the description of the @FOO@ macros that SimFactory uses.<br>
<br>
I checked these places but found no information.<br>
<br>
*<br>
<a href="https://simfactory.bitbucket.io/simfactory2/userguide/" rel="noreferrer" target="_blank">https://simfactory.bitbucket.io/simfactory2/userguide/</a> (no mention of macros)<br>
*<br>
<a href="https://docs.einsteintoolkit.org/et-docs/Simulation_Factory_Advanced_Tutorial" rel="noreferrer" target="_blank">https://docs.einsteintoolkit.org/et-docs/Simulation_Factory_Advanced_Tutorial</a> (1 mention of the @USER@ macro and a pointer to a section #Macros<<a href="https://docs.einsteintoolkit.org/et-docs/Simulation_Factory_Advanced_Tutorial#Macros" rel="noreferrer" target="_blank">https://docs.einsteintoolkit.org/et-docs/Simulation_Factory_Advanced_Tutorial#Macros</a>> that seems missing)<br>
*<br>
<a href="https://docs.einsteintoolkit.org/et-docs/Configuring_a_new_machine" rel="noreferrer" target="_blank">https://docs.einsteintoolkit.org/et-docs/Configuring_a_new_machine</a> (there is no information on the submitscript and runscript)<br>
<br>
So I would like to ask:<br>
<br>
If e.g. I have this line in my submitscript:<br>
#SBATCH -A @ALLOCATION@<br>
<br>
Where is @ALLOCATION@ "read" from?<br>
<br>
My guess is that this is specified in the .ini file in this line:<br>
allocation = <project_account><br>
<br>
Could you confirm if this is the case?<br>
<br>
Is there another source of documentation (that I might have missed) describing what these @FOO@ placeholders do?<br>
<br>
Best regards,<br>
Panagiotis<br>
<br>
<br>
-------------------<br>
Panagiotis Iosif<br>
postdoctoral researcher<br>
Department of Physics, University of Trieste<br>
Via Alfonso Valerio 2, Trieste 34127<br>
Italy<br>
-------------------<br>
<br>
-------------- next part --------------<br>
An HTML attachment was scrubbed...<br>
URL: <<a href="http://lists.einsteintoolkit.org/pipermail/users/attachments/20250725/dca98ab5/attachment-0001.htm" rel="noreferrer" target="_blank">http://lists.einsteintoolkit.org/pipermail/users/attachments/20250725/dca98ab5/attachment-0001.htm</a>><br>
<br>
------------------------------<br>
<br>
Message: 2<br>
Date: Fri, 25 Jul 2025 15:05:48 +0000<br>
From: Luciano Combi <<a href="mailto:lcombi@perimeterinstitute.ca" target="_blank">lcombi@perimeterinstitute.ca</a>><br>
To: "<a href="mailto:users@einsteintoolkit.org" target="_blank">users@einsteintoolkit.org</a>" <<a href="mailto:users@einsteintoolkit.org" target="_blank">users@einsteintoolkit.org</a>><br>
Subject: [Users] Issue with ReadInterpolate<br>
Message-ID:<br>
<<a href="mailto:YQBPR0101MB544409A753F7D8E3ED3097D9CC59A@YQBPR0101MB5444.CANPRD01.PROD.OUTLOOK.COM" target="_blank">YQBPR0101MB544409A753F7D8E3ED3097D9CC59A@YQBPR0101MB5444.CANPRD01.PROD.OUTLOOK.COM</a>><br>
<br>
Content-Type: text/plain; charset="iso-8859-1"<br>
<br>
Hi people,<br>
<br>
I have used ReadInterpolate successfully for different applications in the past. I'm now trying to use it to interpolate onto a new grid that has 5 ghost zones i.e.:<br>
<br>
CoordBase::boundary_size_x_lower = 5<br>
CoordBase::boundary_size_y_lower = 5<br>
CoordBase::boundary_size_z_lower = 5<br>
CoordBase::boundary_size_x_upper = 5<br>
CoordBase::boundary_size_y_upper = 5<br>
CoordBase::boundary_size_z_upper = 5<br>
Driver::ghost_size = 5<br>
GRHydro::GRHydro_stencil = 5<br>
But I'm getting this error:<br>
<br>
CCTK_Proc569.err <==<br>
while executing schedule bin ReadInterpolate_ReadData, routine ReadInterpolate::ReadInterpolate_Read<br>
in thorn ReadInterpolate, file /home/mvxcombi/ET_Zelmani/Cactus/arrangements/EinsteinInitialData/ReadInterpolate/src/read.c:559:<br>
-> Skipping integer variable 'SPACEMASK::space_mask it=335925 tl=0 rl=0 c=569'. Do not know how to interpolate integers.<br>
ERROR from host <a href="http://bcn1814.usr.hlrn.de" rel="noreferrer" target="_blank">bcn1814.usr.hlrn.de</a> process 569<br>
while executing schedule bin ReadInterpolate_ReadData, routine ReadInterpolate::ReadInterpolate_Read<br>
in thorn ReadInterpolate, file /home/mvxcombi/ET_Zelmani/Cactus/arrangements/EinsteinInitialData/ReadInterpolate/src/interpolate.cc:130:<br>
-> There were 70227 points in 27 variables that could not be set.<br>
cactus_etk_devel: /home/mvxcombi/ET_Zelmani/Cactus/arrangements/Carpet/Carpet/src/helpers.cc:275: int Carpet::Abort(const cGH*, int): Assertion `0' failed.<br>
Rank 569 with PID 1675935 received signal 6<br>
Writing backtrace to AIC_interp/backtrace.569.txt<br>
The original grid has 3 ghost zones. I'm using the following parfile:<br>
# What to interpolate<br>
# -------------------<br>
ReadInterpolate::files = "checkpoint.chkpt.it_335925"<br>
ReadInterpolate::max_number_of_read_variables = 30<br>
ReadInterpolate::only_these_datasets = ":Y_e, :rho, :temperature, :vel, :Ax, :Ay, :Az, :psi6phi, :kxx, :kxy, :kxz, :kyy, :kyz, :kzz, :gxx, :gxy, :gxz, :gyy, :gyz, :gzz, :betax, :betay, :betaz, :alp"<br>
ReadInterpolate::minimum_reflevel = 0 # Default<br>
ReadInterpolate::maximum_reflevel = 1000 # Default<br>
<br>
# Interpolator settings<br>
# ---------------------<br>
ReadInterpolate::epsilon = 1.e-12 #2 # Default<br>
ReadInterpolate::interpolator_half_width = -1 # Default, use cctk_nghostzones<br>
ReadInterpolate::interpolator_name = "Lagrange polynomial interpolation"<br>
ReadInterpolate::interpolator_pars = "<br>
order = 3<br>
boundary_off_centering_tolerance = {1. 1. 1. 1. 1. 1.}<br>
boundary_extrapolation_tolerance = {1.e-12 1.e-12 1.e-12 1.e-12 1.e-12 1.e-12}<br>
"<br>
<br>
# Fixing the read-in data<br>
# -----------------------<br>
ReadInterpolate::shift_read_datasets_by[0] = 0.<br>
ReadInterpolate::shift_read_datasets_by[1] = 0.<br>
ReadInterpolate::shift_read_datasets_by[2] = 0.<br>
<br>
ReadInterpolate::enforce_symmetries_after_reading = no # Default<br>
ReadInterpolate::fix_cell_centered_origins = no # Default<br>
<br>
Any suggestions on how to solve this issue?<br>
<br>
Thanks a lot!!<br>
-------------- next part --------------<br>
An HTML attachment was scrubbed...<br>
URL: <<a href="http://lists.einsteintoolkit.org/pipermail/users/attachments/20250725/87444213/attachment.htm" rel="noreferrer" target="_blank">http://lists.einsteintoolkit.org/pipermail/users/attachments/20250725/87444213/attachment.htm</a>><br>
<br>
------------------------------<br>
<br>
Subject: Digest Footer<br>
<br>
_______________________________________________<br>
Users mailing list<br>
<a href="mailto:Users@einsteintoolkit.org" target="_blank">Users@einsteintoolkit.org</a><br>
<a href="http://lists.einsteintoolkit.org/mailman/listinfo/users" rel="noreferrer" target="_blank">http://lists.einsteintoolkit.org/mailman/listinfo/users</a><br>
<br>
<br>
------------------------------<br>
<br>
End of Users Digest, Vol 184, Issue 14<br>
**************************************<br>
</blockquote></div>