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Hi Roland,<br>
<br>
Got it.<br>
<br>
Here is an update:<br>
<br>
I <b>removed all CarpetX-related thorns</b> and tried to compile again.</div>
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This time, the <b>build complained about thorns GRHayLHDX, GRHayLIDX, and NewRadX:</b></div>
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<b><br>
</b></div>
<blockquote style="margin-left: 0.8ex; padding-left: 1ex; border-left: 3px solid rgb(200, 200, 200);">
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<i>CST error 1:</i></div>
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<i>-> Thorn 'GRHayLHDX' requires the capability 'Loop'.</i></div>
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<i>Please add a thorn that provides 'Loop' to your ThornList or remove 'GRHayLHDX' from it !</i></div>
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<i><br>
</i></div>
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<i><br>
</i></div>
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<i>CST error 2:</i></div>
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<i>-> Thorn 'GRHayLIDX' requires the capability 'Loop'.</i></div>
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<i>Please add a thorn that provides 'Loop' to your ThornList or remove 'GRHayLIDX' from it !</i></div>
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<i><br>
</i></div>
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<i><br>
</i></div>
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<i>CST error 3:</i></div>
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<i>-> Thorn 'NewRadX' requires the capability 'Loop'.</i></div>
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<i>Please add a thorn that provides 'Loop' to your ThornList or remove 'NewRadX' from it !</i></div>
</blockquote>
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<br>
</div>
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Comparing with Bruno's original file, I saw that he had disabled <b>GRHayLHDX</b> and
<b>GRHayLIDX.</b></div>
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So I went ahead and <b>disabled these two thorns for starters.</b></div>
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<br>
</div>
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Then <b>the build complained just about the NewRadX thorn</b> (same error message as above).</div>
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<br>
</div>
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<b>So I disabled NewRadX too (</b>see updated .<code>ini</code><b> </b>file attached) and the error about NewRadX went away.</div>
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<br>
Now the <b>build complains about the CCE_Export thorn.</b><br>
You may see the error messages in the updated log file attached.<br>
<br>
</div>
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>From what I understand, <b>the first main error seems to be this </b>(see <code>make_updated.log</code> file)<b>:</b></div>
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<i>/leonardo/home/userexternal/piosif00/Cactus/arrangements/EinsteinAnalysis/CCE_Export/src/h5_export.cc:8:21:
</i><b><i>error:</i></b><i> 'filesystem' is not a namespace-name; did you mean 'system'?</i></div>
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<i>8 | namespace fs = std::filesystem;</i></div>
</blockquote>
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The text around that error message suggests that again a newer C++ dialect option might be required (-std=c++17' or '-std=gnu++17' ).<br>
<br>
</div>
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In my current cfg file, following what was mentioned in the <a title="https://docs.einsteintoolkit.org/et-docs/Configuring_a_new_machine" class="OWAAutoLink" id="LPlnk805837" href="https://docs.einsteintoolkit.org/et-docs/Configuring_a_new_machine">
wiki page about configuring a new machine</a>, I have an older option, namely <code>
-std=gnu+11</code>, for <b>CXXFLAGS</b>.<br>
<br>
I will experiment with different C standards options and see if something else works.</div>
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<br>
<br>
<b>Questions</b>:</div>
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<div role="presentation" class="elementToProof" style="line-height: 19px;">Are GRHayLHDX, GRHayLIDX and NewRadX safe to disable?</div>
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<li style="font-family: Aptos, Aptos_EmbeddedFont, Aptos_MSFontService, Calibri, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); margin-left: 0px;">
<div role="presentation" class="elementToProof" style="line-height: 19px;">For context, my goal is to start with isolated neutron star simulations. Are these thorns necessary for that?</div>
</li></ul>
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<div role="presentation" class="elementToProof" style="line-height: 19px;">Do we expect newer C/C++ standards, like -std=c++17, to break backwards compatibility, i.e. older code?</div>
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<div role="presentation" class="elementToProof" style="line-height: 19px;">Please let me know if I am on the right track, or if you see some additional issues from the log file.</div>
</li></ul>
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<br>
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<br>
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Let me note that I did not start with all of the disabled thorns that <a title="https://bitbucket.org/simfactory/simfactory2/src/a6dff6ecc4a4346c5a73536681486e745d34bb98/mdb/machines/leonardo-DCGP.ini" class="OWAAutoLink" id="OWAa0c5b18b-44b1-1456-135e-2ae3fe9bba93" href="https://bitbucket.org/simfactory/simfactory2/src/a6dff6ecc4a4346c5a73536681486e745d34bb98/mdb/machines/leonardo-DCGP.ini">
Bruno's original ini file</a> uses, because I didn't know exactly what was needed or not. </div>
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Currently, the disabled thorns in my ini file almost align with those in Bruno's original file.</div>
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There are, though, some <b>additional thorns disabled in Bruno's original file, namely: ADIOS2, AMReX, Silo, PAPI and THCExtra/WeakRates.</b></div>
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<br>
I do not know if I should disable them too, but since I did not encounter specific errors about them, I let them be.<br>
Let me know if they should go too.</div>
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<br>
Thanks for the help so far!<br>
<br>
Best,<br>
Panayotis</div>
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<div id="divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" style="font-size:11pt" color="#000000"><b>From:</b> Roland Haas <rhaas@phas.ubc.ca><br>
<b>Sent:</b> Tuesday, September 2, 2025 7:05 PM<br>
<b>To:</b> IOSIF PANAGIOTIS <PANAGIOTIS.IOSIF@units.it><br>
<b>Cc:</b> rhaas@mail.ubc.ca <rhaas@mail.ubc.ca>; Einstein Toolkit Users <users@einsteintoolkit.org><br>
<b>Subject:</b> Re: [Users] ET build errors (Leonardo DCGP, CINECA cluster)</font>
<div> </div>
</div>
<div class="BodyFragment"><font size="2"><span style="font-size:11pt;">
<div class="PlainText">Hello Panayotis,<br>
<br>
oh, oops, for CarpetX (which includes Arith) code you actually need<br>
-std=c++17 .<br>
<br>
If you are not planning to develop for CarpetX then you can remove all<br>
CarpetX related thorns from your thornlist.<br>
<br>
Note that if you have a specific parameter file that you would like to<br>
run, then you can use the MakeThornList helper script to create a<br>
thornlist with just the thorns required for that parameter file,<br>
potentially speeding up compilation quite a bit.<br>
<br>
Something like:<br>
<br>
./utils/Scripts/MakeThornList --master thornlists/einsteintoolkit.th<br>
--output thornlists/qc0.th par/qc0-mclachlan.par<br>
<br>
if you wanted to run qc0-mclachlan.par and had the full thornlist in<br>
thornlists/einsteintoolkit.th (GetComponents will do that for you).<br>
<br>
Then pass qc0.th to simfactory using its --thornlist argument (you<br>
likely also need to pass --reconfig to make sure it actually updates<br>
the thornlist it uses).<br>
<br>
Yours,<br>
Roland<br>
<br>
> [CAUTION: Non-UBC Email]<br>
> <br>
> Hi Roland,<br>
> <br>
> I amended my cfg file and added the flag -ffixed-line-length-none ,<br>
> in the Fortran 77 and 90 compiler options:<br>
> <br>
> <br>
> *<br>
> F77FLAGS = -g -march=native -fcray-pointer -ffixed-line-length-none<br>
> *<br>
> F90FLAGS = -g -march=native -fcray-pointer -ffixed-line-length-none<br>
> <br>
> This step solved the issue with the complaints about the "Exact"<br>
> thorn.<br>
> <br>
> <br>
> The build process continued and stopped at a different point, now<br>
> complaining about the CarpetX/Arith thorn.<br>
> <br>
> I have attached the new make.log file.<br>
> <br>
> I ran the log through ChatGPT, and it suggested that this could be<br>
> caused by C++ standard mismatches. Does this sound reasonable to you?<br>
> <br>
> Currently, the flags for the C and C++ compilers in my config file<br>
> are like this:<br>
> <br>
> *<br>
> CFLAGS = -g -march=native -std=gnu99<br>
> *<br>
> CXXFLAGS = -g -march=native -std=gnu++11<br>
> <br>
> I checked Bruno's file, and the respective options there are the<br>
> following:<br>
> <br>
> *<br>
> CFLAGS = -g -std=gnu99 #-std=c11<br>
> *<br>
> CXXFLAGS = -g -std=gnu++0x #-std=c++14<br>
> <br>
> However, I should note that in Bruno's version, all CarpetX-related<br>
> thorns are disabled in the ini file.<br>
> <br>
> Again, I am not sure I need CarpetX.<br>
> At this point, I am trying to get the build process to work and run<br>
> some examples on the cluster.<br>
> <br>
> <br>
> Returning to the compiler options, I suspect that CFLAGS can be left<br>
> alone. Do you have any suggestions on how to change CXXFLAGS to<br>
> bypass the CarpetX/Arith complaints?<br>
> <br>
> I checked the different C dialect options<br>
> here<<a href="https://gcc.gnu.org/onlinedocs/gcc/C-Dialect-Options.html">https://gcc.gnu.org/onlinedocs/gcc/C-Dialect-Options.html</a>>, and<br>
> it seems that there are a number of possibilities.<br>
> <br>
> Is there some -std=... option that is new enough for CarpetX and<br>
> old/standard enough so that older C++ code is also OK?<br>
> <br>
> <br>
> Best,<br>
> Panayotis<br>
> <br>
> <br>
> <br>
> <br>
> ________________________________<br>
> From: Roland Haas <rhaas@phas.ubc.ca><br>
> Sent: Tuesday, September 2, 2025 5:43 PM<br>
> To: IOSIF PANAGIOTIS <PANAGIOTIS.IOSIF@units.it><br>
> Cc: Einstein Toolkit Users <users@einsteintoolkit.org><br>
> Subject: Re: [Users] ET build errors (Leonardo DCGP, CINECA cluster)<br>
> <br>
> Hello Panayotis,<br>
> <br>
> Oh, I had not noticed, sorry. Hmm, that is the typical cause for these<br>
> issues.<br>
> <br>
> The only other difference I see is `-ffixed-line-length-none` though<br>
> that would also point to an issue with the Cactus Fortran file<br>
> processing not breaking things into short enough lines.<br>
> <br>
> Yours,<br>
> Roland<br>
> <br>
> > [CAUTION: Non-UBC Email]<br>
> ><br>
> > Hi Roland,<br>
> ><br>
> > In the config file I attached, I do have this line included already:<br>
> ><br>
> > FPPFLAGS = -g -traditional<br>
> ><br>
> > Is there anything else I might try?<br>
> ><br>
> > Best,<br>
> > Panayotis<br>
> > ________________________________<br>
> > From: Roland Haas <rhaas@phas.ubc.ca><br>
> > Sent: Tuesday, September 2, 2025 5:08 PM<br>
> > To: IOSIF PANAGIOTIS <PANAGIOTIS.IOSIF@units.it><br>
> > Cc: Einstein Toolkit Users <users@einsteintoolkit.org><br>
> > Subject: Re: [Users] ET build errors (Leonardo DCGP, CINECA cluster)<br>
> ><br>
> > Hello Panayotis,<br>
> ><br>
> > Thanks for including all the output files.<br>
> ><br>
> > In your options list whenever your set FPP you also must also set<br>
> > FPPFLAGS:<br>
> ><br>
> > FPPFLAGS=-traditional<br>
> ><br>
> > See eg generic.cfg or (very new!) Bruno's leonardo-DCGP.cfg file (in<br>
> > simfactory master).<br>
> ><br>
> > Yours,<br>
> > Roland<br>
> > <br>
> > > [CAUTION: Non-UBC Email]<br>
> > ><br>
> > > Hi Einstein Toolkit users,<br>
> > ><br>
> > > I am reaching out regarding some errors I am encountering during<br>
> > > my attempts to compile ET on the Leonardo, CINECA cluster (DCGP<br>
> > > partition).<br>
> > ><br>
> > > Here are some details on the Leonardo cluster:<br>
> > ><br>
> > > *<br>
> > > cluster specifics:<br>
> > > <a href="https://docs.hpc.cineca.it/hpc/leonardo.html#leonardo-card">https://docs.hpc.cineca.it/hpc/leonardo.html#leonardo-card</a> *<br>
> > > OS: Red Hat Enterprise Linux 8.7<br>
> > ><br>
> > > I attach the 4 configuration files I am using (with many added<br>
> > > comments for guidance and future reference). I adapted them from<br>
> > > the respective config files that Bruno Giacomazzo kindly provided.<br>
> > ><br>
> > > I also attach the make.log output of the command:<br>
> > ><br>
> > > ./simfactory/bin/sim build --verbose --reconfig<br>
> > > --machine=leonardo-dcgp1 --optionlist<br>
> > > simfactory/mdb/optionlists/leonardo-dcgp1.cfg<br>
> > > --allocation=CNHPC_1479290_0 --thornlist<br>
> > > thornlists/einsteintoolkit.th 2>&1 | tee make.log<br>
> > ><br>
> > > From what I understand, the build process complains about syntax<br>
> > > errors in the Exact thorn in these two source files:<br>
> > ><br>
> > > *<br>
> > > decode_pars.F<br>
> > > *<br>
> > > Boost_rotation_symmetric.F<br>
> > ><br>
> > > How can I bypass the above problems?<br>
> > ><br>
> > > To be honest, I am not sure that I really need this thorn.<br>
> > > I was simply trying to compile ET using the default thornlist<br>
> > > from a fresh download/installation.<br>
> > ><br>
> > > Is there any other error that the log file is pointing out that I<br>
> > > might be missing?<br>
> > ><br>
> > > Best regards,<br>
> > > Panayotis<br>
> > ><br>
> > ><br>
> > > -------------------<br>
> > > Panagiotis Iosif<br>
> > > postdoctoral researcher<br>
> > > Department of Physics, University of Trieste<br>
> > > Via Alfonso Valerio 2, Trieste 34127<br>
> > > Italy<br>
> > > -------------------<br>
> > > <br>
> ><br>
> ><br>
> > --<br>
> > My email is as private as my paper mail. I therefore support<br>
> > encrypting and signing email messages. Get my PGP key from<br>
> > <a href="http://pgp.mit.edu">http://pgp.mit.edu</a> . <br>
> <br>
> <br>
> --<br>
> My email is as private as my paper mail. I therefore support<br>
> encrypting and signing email messages. Get my PGP key from<br>
> <a href="http://pgp.mit.edu">http://pgp.mit.edu</a> .<br>
<br>
<br>
Yours,<br>
Roland<br>
<br>
-- <br>
My email is as private as my paper mail. I therefore support encrypting<br>
and signing email messages. Get my PGP key from <a href="http://pgp.mit.edu">http://pgp.mit.edu</a> .<br>
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