From rhaas@tapir.caltech.edu Sat May 11 01:53:06 2013
From: rhaas@tapir.caltech.edu
To: commits@lists.einsteintoolkit.org
Subject:
 [Commits] [svn:einsteintoolkit] www/publications/2013_MHD/ (Rev.	1006)
Date: Sat, 11 May 2013 06:53:06 +0000
Message-ID: <20130511065306.A3A892C5D18@mail.einsteintoolkit.org>
MIME-Version: 1.0
Content-Type: multipart/mixed; boundary="===============4380976187487055457=="

--===============4380976187487055457==
Content-Type: text/plain; charset="utf-8"
Content-Transfer-Encoding: quoted-printable

User: rhaas
Date: 2013/05/11 01:53 AM

Modified:
 /publications/2013_MHD/
  einsteintoolkit_plus_zelmani.th, index.php
 /publications/2013_MHD/par/collapse/
  A3_oct.par, A3_oct_64.par, A3_oct_80.par

Log:
 update parfiles and thorn list for mhd paper

File Changes:

Directory: /publications/2013_MHD/
=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
=3D=3D=3D=3D=3D=3D=3D=3D=3D

File [modified]: einsteintoolkit_plus_zelmani.th
Delta lines: +4 -3
=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D
--- publications/2013_MHD/einsteintoolkit_plus_zelmani.th	2013-05-08 00:01:40=
 UTC (rev 1005)
+++ publications/2013_MHD/einsteintoolkit_plus_zelmani.th	2013-05-11 06:53:06=
 UTC (rev 1006)
@@ -402,9 +402,10 @@
=20
=20
 # Private thorns
-!TARGET   =3D $ARR/Zelmani
-!TYPE     =3D http
-!URL      =3D http://www.tapir.caltech.edu/~rhaas/ET/2013_MHD/
+!TARGET   =3D $ARR
+!TYPE     =3D svn
+!AUTH_URL =3D https://svn.einsteintoolkit.org/incoming/$2
+!URL      =3D http://svn.einsteintoolkit.org/incoming/$2
 !CHECKOUT =3D=20
 Zelmani/CartesianCoordinates
 Zelmani/ZelmaniQuadWaveExtract

File [modified]: index.php
Delta lines: +4 -4
=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D
--- publications/2013_MHD/index.php	2013-05-08 00:01:40 UTC (rev 1005)
+++ publications/2013_MHD/index.php	2013-05-11 06:53:06 UTC (rev 1006)
@@ -166,10 +166,10 @@
   <a href=3D"par/collapse/A3_oct_80.par">A3_oct_80.par</a>
   </td></tr>
   <tr><th>thornlist</th><td><a href=3D"einsteintoolkit_plus_zelmani.th">Eins=
tein Toolkit 2013_05 release + selected Zelmani</a></td></tr>
-  <tr><th>Initial data checkpoints </th><td>
-  <a href=3D"ID/collapse/ID_A3_oct.tar.gz">ID_A3_oct.tar.gz</a>
-  <a href=3D"ID/collapse/ID_A3_oct_64.tar.gz">ID_A3_oct_64.tar.gz</a>
-  <a href=3D"ID/collapse/ID_A3_oct_80.tar.gz">ID_A3_oct_80.tar.gz</a>
+  <tr><th>Initial data</th><td>
+  <a href=3D"http://www.tapir.caltech.edu/~rhaas/ET/2013_MHD/collapse/ID_A3_=
octh5.xz">ID_A3_oct.h5.xz (221Mb)</a>
+  <a href=3D"http://www.tapir.caltech.edu/~rhaas/ET/2013_MHD/collapse/ID_A3_=
oct_64.h5.xz">ID_A3_oct_64.h5.xz (388Mb)</a>
+  <a href=3D"http://www.tapir.caltech.edu/~rhaas/ET/2013_MHD/collapse/ID_A3_=
oct_80.h5.xz">ID_A3_oct_80.h5.xz (747Mb)</a>
   </td></tr>
   <tr><th>CPU time </th><td>x SU</td></tr>
   <tr><th>memory   </th><td>x GB</td></tr>

Directory: /publications/2013_MHD/par/collapse/
=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D

File [modified]: A3_oct.par
Delta lines: +26 -30
=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D
--- publications/2013_MHD/par/collapse/A3_oct.par	2013-05-08 00:01:40 UTC (re=
v 1005)
+++ publications/2013_MHD/par/collapse/A3_oct.par	2013-05-11 06:53:06 UTC (re=
v 1006)
@@ -47,7 +47,8 @@
 		eos_omni
 		Formaline
 		ZelmaniQuadWaveExtract
-		Whisky_RNSID
+#		Whisky_RNSID
+                IDFileADM
 		ReflectionSymmetry
 		RotatingSymmetry90
 "
@@ -622,37 +623,32 @@
=20
 ########################### Initial Data ##############################
=20
-admbase::initial_data				=3D	"rnsid"
-admbase::initial_lapse				=3D	"rnsid"
-admbase::initial_shift				=3D	"rnsid"
+## if you have Whisky_RNSID you can create initial data using these options
+#admbase::initial_data				=3D	"rnsid"
+#admbase::initial_lapse				=3D	"rnsid"
+#admbase::initial_shift				=3D	"rnsid"
+#HydroBase::initial_hydro			=3D	"rnsid"
+#
+#rnsid::axes_ratio                               =3D       0.667         # 0=
.917=20
+#rnsid::accuracy                                 =3D       1e-7
+#rnsid::rotation_type                            =3D       "uniform"       #=
 ok
+#
+#rnsid::RNS_Gamma                                =3D       1.33333333333333 =
# ok
+#rnsid::RNS_K                                    =3D       0.4640517        =
# 5E14 [cgs]
+#
+#rnsid::recover_2Dmodel                          =3D       "no"
+#rnsid::save_2Dmodel                             =3D       "no"
+#
+#rnsid::mdiv                                     =3D       601
+#rnsid::sdiv                                     =3D       1201
=20
-#rnsid::radius                                   =3D       1628         # 0.=
917=20
-rnsid::axes_ratio                               =3D       0.667         # 0.=
917=20
-rnsid::accuracy                                 =3D       1e-7
-#rnsid::A_diff                                   =3D       0.5=20
-#rnsid::A_diff                                   =3D       0.317320341
-rnsid::rotation_type                            =3D       "uniform"       # =
ok
+admbase::initial_data                            =3D "read from file"
+admbase::initial_lapse                           =3D "read from file"
+admbase::initial_shift                           =3D "read from file"
+HydroBase::initial_hydro                         =3D "read from file" # igno=
red by file reader
+IO::filereader_ID_dir                            =3D "$ENV{INITIAL_DATA}/rns=
id"
+IO::filereader_ID_files                          =3D "ID_A3_oct_80"
=20
-rnsid::RNS_Gamma                                =3D       1.33333333333333 #=
 ok
-rnsid::RNS_K                                    =3D       0.4640517        #=
 5E14 [cgs]
-
-rnsid::recover_2Dmodel                          =3D       "no"
-rnsid::save_2Dmodel                             =3D       "no"
-
-rnsid::mdiv                                     =3D       601
-rnsid::sdiv                                     =3D       1201
-
-#eos_omni::poly_gamma                            =3D 1.31
-#eos_omni::poly_gamma_ini                        =3D 1.333333333333333333
-#eos_omni::poly_k                                =3D 0.4640517
-#eos_omni::gl_gamma                              =3D 1.31
-#eos_omni::gl_k                                  =3D 0.4640517
-#eos_omni::hybrid_gamma1                         =3D 1.31
-#eos_omni::hybrid_gamma2                         =3D 2.5
-#eos_omni::hybrid_gamma_th                       =3D 1.5
-#eos_omni::hybrid_k1                             =3D 0.4640517
-#eos_omni::hybrid_rho_nuc                        =3D 3.238607e-4
-
 eos_omni::poly_gamma                            =3D 1.3
 eos_omni::poly_k                                =3D 0.4640517
 eos_omni::gl_gamma                              =3D 1.3

File [modified]: A3_oct_64.par
Delta lines: +26 -36
=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D
--- publications/2013_MHD/par/collapse/A3_oct_64.par	2013-05-08 00:01:40 UTC =
(rev 1005)
+++ publications/2013_MHD/par/collapse/A3_oct_64.par	2013-05-11 06:53:06 UTC =
(rev 1006)
@@ -47,7 +47,8 @@
 		eos_omni
 		Formaline
 		ZelmaniQuadWaveExtract
-		Whisky_RNSID
+#		Whisky_RNSID
+                IDFileADM
 		ReflectionSymmetry
 		RotatingSymmetry90
 "
@@ -622,37 +623,32 @@
=20
 ########################### Initial Data ##############################
=20
-admbase::initial_data				=3D	"rnsid"
-admbase::initial_lapse				=3D	"rnsid"
-admbase::initial_shift				=3D	"rnsid"
+## if you have Whisky_RNSID you can create initial data using these options
+#admbase::initial_data				=3D	"rnsid"
+#admbase::initial_lapse				=3D	"rnsid"
+#admbase::initial_shift				=3D	"rnsid"
+#HydroBase::initial_hydro			=3D	"rnsid"
+#
+#rnsid::axes_ratio                               =3D       0.667         # 0=
.917=20
+#rnsid::accuracy                                 =3D       1e-7
+#rnsid::rotation_type                            =3D       "uniform"       #=
 ok
+#
+#rnsid::RNS_Gamma                                =3D       1.33333333333333 =
# ok
+#rnsid::RNS_K                                    =3D       0.4640517        =
# 5E14 [cgs]
+#
+#rnsid::recover_2Dmodel                          =3D       "no"
+#rnsid::save_2Dmodel                             =3D       "no"
+#
+#rnsid::mdiv                                     =3D       601
+#rnsid::sdiv                                     =3D       1201
=20
-#rnsid::radius                                   =3D       1628         # 0.=
917=20
-rnsid::axes_ratio                               =3D       0.667         # 0.=
917=20
-rnsid::accuracy                                 =3D       1e-7
-#rnsid::A_diff                                   =3D       0.5=20
-#rnsid::A_diff                                   =3D       0.317320341
-rnsid::rotation_type                            =3D       "uniform"       # =
ok
+admbase::initial_data                            =3D "read from file"
+admbase::initial_lapse                           =3D "read from file"
+admbase::initial_shift                           =3D "read from file"
+HydroBase::initial_hydro                         =3D "read from file" # igno=
red by file reader
+IO::filereader_ID_dir                            =3D "$ENV{INITIAL_DATA}/rns=
id"
+IO::filereader_ID_files                          =3D "ID_A3_oct_80"
=20
-rnsid::RNS_Gamma                                =3D       1.33333333333333 #=
 ok
-rnsid::RNS_K                                    =3D       0.4640517        #=
 5E14 [cgs]
-
-rnsid::recover_2Dmodel                          =3D       "no"
-rnsid::save_2Dmodel                             =3D       "no"
-
-rnsid::mdiv                                     =3D       601
-rnsid::sdiv                                     =3D       1201
-
-#eos_omni::poly_gamma                            =3D 1.31
-#eos_omni::poly_gamma_ini                        =3D 1.333333333333333333
-#eos_omni::poly_k                                =3D 0.4640517
-#eos_omni::gl_gamma                              =3D 1.31
-#eos_omni::gl_k                                  =3D 0.4640517
-#eos_omni::hybrid_gamma1                         =3D 1.31
-#eos_omni::hybrid_gamma2                         =3D 2.5
-#eos_omni::hybrid_gamma_th                       =3D 1.5
-#eos_omni::hybrid_k1                             =3D 0.4640517
-#eos_omni::hybrid_rho_nuc                        =3D 3.238607e-4
-
 eos_omni::poly_gamma                            =3D 1.3
 eos_omni::poly_k                                =3D 0.4640517
 eos_omni::gl_gamma                              =3D 1.3
@@ -722,11 +718,5 @@
=20
=20
=20
-#ccccglobalmodes::do_CoM         =3D yes
-#ccccglobalmodes::cut_method     =3D radius
-##ccccglobalmodes::radius_cut     =3D 500
-#ccccglobalmodes::CoM_radius     =3D 1500
-#CCCCGlobalModes::compute_every =3D 128
-
 ZelmaniQuadWaveExtract::integrand_type =3D "shibata"
 ZelmaniQuadWaveExtract::compute_every =3D 32

File [modified]: A3_oct_80.par
Delta lines: +26 -30
=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D
--- publications/2013_MHD/par/collapse/A3_oct_80.par	2013-05-08 00:01:40 UTC =
(rev 1005)
+++ publications/2013_MHD/par/collapse/A3_oct_80.par	2013-05-11 06:53:06 UTC =
(rev 1006)
@@ -47,7 +47,8 @@
 		eos_omni
 		Formaline
 		ZelmaniQuadWaveExtract
-		Whisky_RNSID
+#		Whisky_RNSID
+                IDFileADM
 		ReflectionSymmetry
 		RotatingSymmetry90
 "
@@ -622,37 +623,32 @@
=20
 ########################### Initial Data ##############################
=20
-admbase::initial_data				=3D	"rnsid"
-admbase::initial_lapse				=3D	"rnsid"
-admbase::initial_shift				=3D	"rnsid"
+## if you have Whisky_RNSID you can create initial data using these options
+#admbase::initial_data				=3D	"rnsid"
+#admbase::initial_lapse				=3D	"rnsid"
+#admbase::initial_shift				=3D	"rnsid"
+#HydroBase::initial_hydro			=3D	"rnsid"
+#
+#rnsid::axes_ratio                               =3D       0.667         # 0=
.917=20
+#rnsid::accuracy                                 =3D       1e-7
+#rnsid::rotation_type                            =3D       "uniform"       #=
 ok
+#
+#rnsid::RNS_Gamma                                =3D       1.33333333333333 =
# ok
+#rnsid::RNS_K                                    =3D       0.4640517        =
# 5E14 [cgs]
+#
+#rnsid::recover_2Dmodel                          =3D       "no"
+#rnsid::save_2Dmodel                             =3D       "no"
+#
+#rnsid::mdiv                                     =3D       601
+#rnsid::sdiv                                     =3D       1201
=20
-#rnsid::radius                                   =3D       1628         # 0.=
917=20
-rnsid::axes_ratio                               =3D       0.667         # 0.=
917=20
-rnsid::accuracy                                 =3D       1e-7
-#rnsid::A_diff                                   =3D       0.5=20
-#rnsid::A_diff                                   =3D       0.317320341
-rnsid::rotation_type                            =3D       "uniform"       # =
ok
+admbase::initial_data                            =3D "read from file"
+admbase::initial_lapse                           =3D "read from file"
+admbase::initial_shift                           =3D "read from file"
+HydroBase::initial_hydro                         =3D "read from file" # igno=
red by file reader
+IO::filereader_ID_dir                            =3D "$ENV{INITIAL_DATA}/rns=
id"
+IO::filereader_ID_files                          =3D "ID_A3_oct_80"
=20
-rnsid::RNS_Gamma                                =3D       1.33333333333333 #=
 ok
-rnsid::RNS_K                                    =3D       0.4640517        #=
 5E14 [cgs]
-
-rnsid::recover_2Dmodel                          =3D       "no"
-rnsid::save_2Dmodel                             =3D       "no"
-
-rnsid::mdiv                                     =3D       601
-rnsid::sdiv                                     =3D       1201
-
-#eos_omni::poly_gamma                            =3D 1.31
-#eos_omni::poly_gamma_ini                        =3D 1.333333333333333333
-#eos_omni::poly_k                                =3D 0.4640517
-#eos_omni::gl_gamma                              =3D 1.31
-#eos_omni::gl_k                                  =3D 0.4640517
-#eos_omni::hybrid_gamma1                         =3D 1.31
-#eos_omni::hybrid_gamma2                         =3D 2.5
-#eos_omni::hybrid_gamma_th                       =3D 1.5
-#eos_omni::hybrid_k1                             =3D 0.4640517
-#eos_omni::hybrid_rho_nuc                        =3D 3.238607e-4
-
 eos_omni::poly_gamma                            =3D 1.3
 eos_omni::poly_k                                =3D 0.4640517
 eos_omni::gl_gamma                              =3D 1.3


--===============4380976187487055457==--