LOG FILE for simulation "recover_test2"

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2011-11-21 10:08:19 ettest04@qb4.loni.org:

Skeleton created

Job directory: "/scratch/ettest04/simulations/recover_test2"

Machine: "queenbee"

Simulation id: "simulation-recover_test2-queenbee-qb4.loni.org-ettest04-2011.11.21-10.08.19-8396"

Source dir: "/home/ettest04/Cactus"

Configuration: "sim"

Config id: "config-sim-qb4.loni.org-home-ettest04-Cactus"

Build id: "build-sim-qb4.loni.org-ettest04-2011.11.08-19.43.33-31159"

Executable: "/home/ettest04/Cactus/exe/cactus_sim"

Option list: "configs/sim/OptionList"

Script file: "/home/ettest04/Cactus/configs/sim/ScriptFile"

Parameter file: "par/rns_64_25km_1lev_tvd_vanleerMC2_hlle_MADM_1.432_HarmF_2_HarmN_1_g12.par"

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2011-11-21 10:08:19 ettest04@qb4.loni.org:

Submitting:

Using restart id "0000"

Not recovering since there are no restart ids

Created restart directory

Activated restart directory

Created job script

Created parameter file

About to submit job

Executing: cd /scratch/ettest04/simulations/recover_test2/output-0000 && { qsub SIMFACTORY/ScriptFile ; }

Submitted job

Job id is "583945"

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2011-11-21 10:47:32 ettest04@qb4.loni.org:

Submitting:

Restart id "0000" is active

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Tha

On Sun, Nov 13, 2011 at 8:48 AM, Erik Schnetter <schnetter@cct.lsu.edu> wrote:

Petr

In most cases, a simple "submit" (with the same simulation name)
should suffice. --from-restart-id allows restarting from a particular
restart, in case you don't want to restart from the previous restart.

Simfactory has a parameter file simfactory/etc/parfiles/recover.par.
Could you try this? You would submit it on a single process, let it
run for a few minutes, and then submit it again:

./bin/sim submit recover --parfile=simfactory/etc/parfiles/recover.par
--walltime=0:10:0

and later

./bin/sim submit recover --parfile=simfactory/etc/parfiles/recover.par
--walltime=0:10:0
This should work.

-erik

On Sat, Nov 12, 2011 at 8:57 PM, Petr Tsatsin <ptsatsin@fau.edu> wrote:
> Hello,
>
> I'm trying to restart my simulation on queenbee using simfactory. I tried
> "./sim submit --from-restart-id ..." and I got

> "Simulation Factory:
> [log] Submitting:
> [log] Using restart id "0002"
> [log] Requested recovering from restart id "0"
> [log] Could not find checkpoint files in restart id "0000"
> Aborting.''
> Inside my parameter file for this simulation I set up HDF5 check pointing in
> following way:
> "IO::out_dir = $parfile
> IOHDF5::checkpoint = "yes"
> IO::checkpoint_every = 100000
> IO::checkpoint_file = $parfile
> IO::checkpoint_dir = $parfile
> IO::recover="auto"
> IO::recover_file = $parfile
> IO::recover_dir = $parfile"
> I checked that h5 check point files are actually inside the output-0000
> directory.
> Any suggestions how can I restart the my simulation from HDF5 checkpoint
> with a simfactory?
> Thank you.
> --
> Petr Tsatsin
> Graduate Student- Department of Physics
> Charles E. Schmidt College of Science
> Florida Atlantic University
> (561)-297-3386
> ptsatin@fau.edu, ptsatsin@gmail.com
>
> _______________________________________________
> Users mailing list
> Users@einsteintoolkit.org
> http://lists.einsteintoolkit.org/mailman/listinfo/users
>
>

--

Erik Schnetter <schnetter@cct.lsu.edu> http://www.cct.lsu.edu/~eschnett/

--
Petr Tsatsin
Graduate Student- Department of Physics
Charles E. Schmidt College of Science
Florida Atlantic University
(561)-297-3386
ptsatin@fau.edu, ptsatsin@gmail.com