The build goes along fine apparently until the final
executable. I copy below the part after which the build
chokes:
Creating cactus_sim in /Users/comerduncan/Cactus/exe from
EinsteinAnalysis/ADMAnalysis EinsteinBase/ADMBase
EinsteinBase/ADMCoupling EinsteinBase/ADMMacros
AEIThorns/ADMMass AEIThorns/AEILocalInterp
EinsteinAnalysis/AHFinder EinsteinAnalysis/AHFinderDirect
ExternalLibraries/BLAS CactusBase/Boundary
Cosmology/CT_Analytic Cosmology/CT_MultiLevel
EinsteinAnalysis/CalcK Carpet/Carpet
Carpet/CarpetEvolutionMask Carpet/CarpetIOASCII
Carpet/CarpetIOBasic Carpet/CarpetIOHDF5
Carpet/CarpetIOScalar Carpet/CarpetIntegrateTest
Carpet/CarpetInterp Carpet/CarpetInterp2 Carpet/CarpetLib
Carpet/CarpetMask Carpet/CarpetProlongateTest
Carpet/CarpetReduce Carpet/CarpetRegrid Carpet/CarpetRegrid2
Carpet/CarpetRegridTest Carpet/CarpetSlab
Carpet/CarpetTracker CactusBase/CartGrid3D
CactusNumerical/Cartoon2D EinsteinBase/Constants
CactusBase/CoordBase EinsteinBase/CoordGauge
Carpet/CycleClock CactusExamples/DemoInterp
CactusNumerical/Dissipation
EinsteinInitialData/DistortedBHIVP EinsteinAnalysis/EHFinder
EinsteinBase/EOS_Base EinsteinEOS/EOS_Hybrid
EinsteinEOS/EOS_IdealFluid EinsteinEOS/EOS_Omni
EinsteinEOS/EOS_Polytrope EinsteinExact/EinsteinExact_Test
CactusElliptic/EllBase CactusElliptic/EllSOR
EinsteinInitialData/Exact EinsteinAnalysis/Extract
ExternalLibraries/FFTW3 CactusExamples/FleshInfo
CactusUtils/Formaline CactusBase/Fortran
EinsteinEvolve/GRHydro EinsteinEvolve/GRHydro_InitData
ExternalLibraries/GSL EinsteinExact/GaugeWave
KrancNumericalTools/GenericFD ExternalLibraries/HDF5
CactusConnect/HTTPD CactusConnect/HTTPDExtra
CactusExamples/HelloWorld Carpet/HighOrderWaveTest
EinsteinBase/HydroBase EinsteinAnalysis/Hydro_Analysis
EinsteinInitialData/Hydro_InitExcision
EinsteinInitialData/IDAnalyticBH
EinsteinInitialData/IDAxiBrillBH
EinsteinInitialData/IDAxiOddBrillBH
EinsteinInitialData/IDBrillData
EinsteinInitialData/IDConstraintViolate
EinsteinInitialData/IDFileADM
EinsteinInitialData/IDLinearWaves CactusWave/IDScalarWave
CactusWave/IDScalarWaveC CactusWave/IDScalarWaveCXX
CactusWave/IDScalarWaveElliptic CactusExamples/IDWaveMoL
CactusBase/IOASCII CactusBase/IOBasic CactusPUGHIO/IOHDF5
CactusPUGHIO/IOHDF5Util CactusIO/IOJpeg CactusBase/IOUtil
CactusBase/InitBase CactusNumerical/InterpToArray
EinsteinExact/KerrSchild ExternalLibraries/LAPACK
ExternalLibraries/LORENE CactusNumerical/LocalInterp
CactusNumerical/LocalInterp2 CactusNumerical/LocalReduce
Carpet/LoopControl McLachlan/ML_ADMConstraints
McLachlan/ML_ADMQuantities McLachlan/ML_BSSN
McLachlan/ML_BSSN_Helper McLachlan/ML_BSSN_Test
McLachlan/ML_CCZ4 McLachlan/ML_CCZ4_Helper
McLachlan/ML_CCZ4_Test McLachlan/ML_WaveToy
McLachlan/ML_WaveToy_Test ExternalLibraries/MPI
CactusUtils/MemSpeed EinsteinInitialData/Meudon_Bin_BH
EinsteinInitialData/Meudon_Bin_NS
EinsteinInitialData/Meudon_Mag_NS EinsteinExact/Minkowski
CactusNumerical/MoL EinsteinExact/ModifiedSchwarzschildBL
EinsteinAnalysis/Multipole CactusUtils/NaNCatcher
CactusUtils/NaNChecker EinsteinEvolve/NewRad
CactusUtils/Nice EinsteinInitialData/NoExcision
CactusUtils/NoMPI CactusNumerical/Noise
CactusNumerical/Norms PITTNullCode/NullConstr
PITTNullCode/NullDecomp PITTNullCode/NullEvolve
PITTNullCode/NullExact PITTNullCode/NullGrid
PITTNullCode/NullInterp PITTNullCode/NullNews
PITTNullCode/NullPsiInt PITTNullCode/NullSHRExtract
PITTNullCode/NullVars ExternalLibraries/OpenSSL
EinsteinAnalysis/Outflow ExternalLibraries/PAPI
CactusPUGH/PUGH CactusPUGH/PUGHInterp CactusPUGH/PUGHReduce
CactusPUGH/PUGHSlab CactusNumerical/Periodic
LSUThorns/PeriodicCarpet CactusExamples/Poisson
AEIThorns/PunctureTracker LSUThorns/QuasiLocalMeasures
Carpet/ReductionTest Carpet/ReductionTest2
Carpet/ReductionTest3 CactusNumerical/ReflectionSymmetry
Carpet/RegridSyncTest EinsteinInitialData/RotatingDBHIVP
CactusNumerical/RotatingSymmetry180
CactusNumerical/RotatingSymmetry90
CactusExamples/SampleBoundary CactusExamples/SampleIO
EinsteinUtils/SetMask_SphericalSurface
EinsteinExact/ShiftedGaugeWave CactusNumerical/Slab
CactusNumerical/SlabTest CactusConnect/Socket
CactusNumerical/SpaceMask
PITTNullCode/SphericalHarmonicDecomp
PITTNullCode/SphericalHarmonicRecon
CactusNumerical/SphericalSurface
EinsteinBase/StaticConformal LSUThorns/SummationByParts
CactusBase/SymBase AEIThorns/SystemStatistics
CactusUtils/SystemTopology CactusElliptic/TATelliptic
EinsteinUtils/TGRtensor EinsteinInitialData/TOVSolver
CactusUtils/TerminationTrigger CactusTest/TestArrays
Carpet/TestCarpetGridInfo CactusTest/TestComplex
CactusTest/TestCoordinates
CactusTest/TestFortranCrayPointers
CactusTest/TestFortranDependencies1
CactusTest/TestFortranDependencies2
CactusTest/TestFpointerNULL CactusTest/TestFreeF90
CactusTest/TestGlobalReduce CactusTest/TestInclude1
CactusTest/TestInclude2 CactusNumerical/TestLocalInterp2
CactusNumerical/TestLocalReduce CactusTest/TestLoop
Carpet/TestLoopControl CactusTest/TestMath
CactusTest/TestMoL CactusTest/TestPar CactusTest/TestReduce
CactusTest/TestSchedule CactusTest/TestStrings
CactusTest/TestTable CactusTest/TestTimers
CactusTest/TestTypes CactusBase/Time
CactusExamples/TimerInfo CactusUtils/TimerReport
Carpet/Timers EinsteinBase/TmunuBase AEIThorns/Trigger
EinsteinInitialData/TwoPunctures EinsteinExact/Vaidya2
LSUThorns/Vectors CactusWave/WaveBinarySource
CactusExamples/WaveMoL CactusExamples/WaveToy1DF77
CactusExamples/WaveToy2DF77 CactusWave/WaveToyC
CactusWave/WaveToyCXX CactusWave/WaveToyExtra
CactusWave/WaveToyF77 CactusWave/WaveToyF90
CactusWave/WaveToyFreeF90 EinsteinAnalysis/WeylScal4
ExternalLibraries/hwloc ExternalLibraries/libjpeg
ExternalLibraries/zlib
Formaline: Creating git master repository...
Formaline: Pushing source tree to master git
repository...
Undefined symbols for architecture x86_64:
"MPI::Win::Free()", referenced from:
vtable for MPI::Win in
libthorn_PeriodicCarpet.a(periodic.cc.o)
vtable for MPI::Win in
libthorn_CT_MultiLevel.a(CT_MultiLevel.cc.o)
vtable for MPI::Win in
libthorn_Carpet.a(helpers.cc.o)
vtable for MPI::Win in
libthorn_CarpetEvolutionMask.a(evolution_mask.cc.o)
vtable for MPI::Win in
libthorn_CarpetIOASCII.a(ioascii.cc.o)
vtable for MPI::Win in
libthorn_CarpetIOBasic.a(iobasic.cc.o)
vtable for MPI::Win in
libthorn_CarpetIOHDF5.a(Input.cc.o)
...
"MPI::Comm::Comm()", referenced from:
MPI::Intercomm::Merge(bool) const in
libthorn_PeriodicCarpet.a(periodic.cc.o)
MPI::Intracomm::Split(int, int) const in
libthorn_PeriodicCarpet.a(periodic.cc.o)
MPI::Intracomm::Create(MPI::Group const&) const
in libthorn_PeriodicCarpet.a(periodic.cc.o)
MPI::Graphcomm::Clone() const in
libthorn_PeriodicCarpet.a(periodic.cc.o)
MPI::Cartcomm::Clone() const in
libthorn_PeriodicCarpet.a(periodic.cc.o)
MPI::Intracomm::Clone() const in
libthorn_PeriodicCarpet.a(periodic.cc.o)
MPI::Intracomm::Create_graph(int, int const*, int
const*, bool) const in
libthorn_PeriodicCarpet.a(periodic.cc.o)
...
"MPI::Datatype::Free()", referenced from:
vtable for MPI::Datatype in
libthorn_PeriodicCarpet.a(periodic.cc.o)
vtable for MPI::Datatype in
libthorn_CT_MultiLevel.a(CT_MultiLevel.cc.o)
vtable for MPI::Datatype in
libthorn_Carpet.a(helpers.cc.o)
vtable for MPI::Datatype in
libthorn_CarpetEvolutionMask.a(evolution_mask.cc.o)
vtable for MPI::Datatype in
libthorn_CarpetIOASCII.a(ioascii.cc.o)
vtable for MPI::Datatype in
libthorn_CarpetIOBasic.a(iobasic.cc.o)
vtable for MPI::Datatype in
libthorn_CarpetIOHDF5.a(Input.cc.o)
...
"_ompi_mpi_cxx_op_intercept", referenced from:
MPI::Op::Init(void (*)(void const*, void*, int,
MPI::Datatype const&), bool) in
libthorn_PeriodicCarpet.a(periodic.cc.o)
MPI::Op::Init(void (*)(void const*, void*, int,
MPI::Datatype const&), bool) in
libthorn_CT_MultiLevel.a(CT_MultiLevel.cc.o)
MPI::Op::Init(void (*)(void const*, void*, int,
MPI::Datatype const&), bool) in
libthorn_Carpet.a(helpers.cc.o)
MPI::Op::Init(void (*)(void const*, void*, int,
MPI::Datatype const&), bool) in
libthorn_CarpetEvolutionMask.a(evolution_mask.cc.o)
MPI::Op::Init(void (*)(void const*, void*, int,
MPI::Datatype const&), bool) in
libthorn_CarpetIOASCII.a(ioascii.cc.o)
MPI::Op::Init(void (*)(void const*, void*, int,
MPI::Datatype const&), bool) in
libthorn_CarpetIOBasic.a(iobasic.cc.o)
MPI::Op::Init(void (*)(void const*, void*, int,
MPI::Datatype const&), bool) in
libthorn_CarpetIOHDF5.a(Input.cc.o)
...
ld: symbol(s) not found for architecture x86_64
collect2: error: ld returned 1 exit status
make[1]: *** [/Users/comerduncan/Cactus/exe/cactus_sim]
Error 1
make[1]: *** Waiting for unfinished jobs....
Formaline: Pushing to local repository
/Users/comerduncan/Cactus/../CactusSourceJar.git...
Formaline: Optimising git repository (slow only the first
time)...
make: *** [sim] Error 2
Is there likely a problem with openmpi again?? Here is
some info about the current ports:
Note that I had elected to activate openmpi-gcc49
@1.7.5_3+fortran (active) rather than openmpi-gcc49
@1.7.5_4+fortran because with _4 the build crashed.
Can I get some further help on resolving this? I have not
updated macports in a few weeks as I did not want to possibly
pollute what did work a while back.
Thanks.