Hi all,
I am trying to compile the Einstein toolkit on the SuperMUC-NG cluster but I am having some issues with the HDF5 libraries and I don’t understand whether it is a problem of the cluster itself or if there is any workaround that maybe some of you
know.
I first this warning message when the CST is running on the HDF5 section:
********************************************************************************
Running configuration script for thorn HDF5:
Additional requested language support: Fortran
WARNING in HDF5 configuration:
None of H5pubconf.h H5pubconf-64.h H5pubconf-32.h found in
Automatic detection of szip/zlib compression not possible
Finished running configuration script for thorn HDF5.
Checking consistency...
Creating Thorn-Flesh bindings...
Creating implementation bindings...
Creating parameter bindings...
Creating variable bindings...
Creating schedule bindings...
Creating function bindings...
CST finished.
********************************************************************************
Then the compilation goes on until it fails when there’s the first call to the HDF5 library:
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dss/dsshome1/00/di39wog2/EinsteinToolkit/Cactus/arrangements/EinsteinAnalysis/AHFinderDirect/src/patch/
patch_system.cc(87): catastrophic error: cannot open source file "hdf5.h"
# include <hdf5.h>
^
/dss/dsshome1/00/di39wog2/EinsteinToolkit/Cactus/arrangements/EinsteinAnalysis/AHFinderDirect/src/patch/
patch_system.cc(87): catastrophic error: cannot open source file "hdf5.h"
# include <hdf5.h>
^
compilation aborted for /dss/dsshome1/00/di39wog2/EinsteinToolkit/Cactus/configs/ET_SUPERMUC_NG/build/AHFinderDirect/patch/
patch_system.cc (code 4)
make[3]: *** [patch_system.cc.o] Error 4
make[2]: *** [patch/make.checked] Error 2
make[1]: *** [/dss/dsshome1/00/di39wog2/EinsteinToolkit/Cactus/configs/ET_SUPERMUC_NG/lib/libthorn_AHFinderDirect.a] Error 2
make: *** [ET_SUPERMUC_NG] Error 2
********************************************************************************
I attach here both log and error file of the compilation and my configuration script if you need it. I have already tried every possible hdf5 module they have on the cluster. They all lead to the same exact error. Please let me know if anything
else is needed.