[Commits] [Carpet] annotated tag, ET_2013_05_v0, created. ET_2013_05_v0
Carpet git repositories
carpetgit at stellarcollapse.org
Mon May 27 17:21:17 CDT 2013
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the project "Carpet — Adaptive Mesh Refinement for the Cactus Framework <http://carpetcode.org/>".
The annotated tag, ET_2013_05_v0 has been created
at 8c22b87ed5d379b0d167edfb6600f22a7e3ad810 (tag)
tagging c8bbd52a3ddfe031ba4789bee3a8ab72ecab4e9f (commit)
replaces carpet-6-init
tagged by Frank Löffler
on Mon May 27 17:20:47 2013 -0500
- Log -----------------------------------------------------------------
ET_2013_05_v0 tag
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Christian Reisswig (3):
Introduce parameter "additional_overlap_zones" to control the amount of additional (user-requested) overlap zones.
CarpetInterp: New ENO2 interpolator.
Merge branch 'master' of carpetcode.org:carpet
David Radice (1):
CarpetIOHDF5: Sliced HDF5 output index file not stored correctly
Erik Schnetter (183):
CarpetLib: Allow assigning a region to itself
CarpetLib: Allow (again) merging regions that contain process trees
Carpet: Disable storage for point_classification
CarpetLib: Implement bboxset::contains(vect)
CarpetLib: Store level_boxes in dh structure
CarpetLib: Do not interpolate from buffer zones, if requested
CarpetIOASCII: Pass vectors by reference
CarpetIOASCII: White space change
CarpetIOASCII: Implement using grid::coordinates to output coordinates
Carpet: Remove outdated backtrace function declarations
CarpetLib: Clean up backtrace generation
Carpet: Correct errors with adaptive time stepping
LoopControl: Change printstats default to "no"
Remove Carpet's mechanisms to deal with how to call isnan
CarpetIOF5: Correct calls to Carpet::Timer
Carpet: Correct #ifdefs in CarpetSimpleMPIDatatypeLength
Carpet: Requirements: Add aliased function to invalidate variables
Carpet: Re-indent timer macros
CarpetLib: Remove restrict qualifier from pointer cast
Carpet: Correct errors in adaptive step size handling
Carpet: Requirements: Warn about unnecessary syncs
Carpet: Requirements: Add precondition to clause_t::active_on_timelevel
CarpetRegrid2: Perform domain decomposition only when a refinement level changes
CarpetRegrid2: Correct snapping to coarse grid for cell centering
Carpet, CarpetRegrid2: When comparing refined regions treat non-existing levels as empty
Carpet: Execute CPINITIAL only after initial data setup, not after recovering
Carpet, CarpetLib: Move #define _GNU_SOURCE to correct file
CarpetLib: Update cycle.h from upstream
CarpetIOF5: Free HDF5 data when closing files
Carpet: Add test cases checking cctk_time during initial data setup
Carpet: Set NPROCS for kasner test cases
Carpet: Correct comment
CarpetRegrid2: Use "isfinite" instead of "not isnan"
Carpet: Correct switch statement in CarpetMPIDatatype
CarpetLib: Use correct MPI reduction operator for product reductions
CarpetLib: Add self-checks to MPI reduction operators
CarpetReduce: Avoid duplicate local variables
CarpetReduce: Use self-defined MPI operators for complex numbers
CarpetReduce: Do not access NULL pointer
CarpetMask: Add missing OpenMP reduction clause
CarpetLib: Define dh members tallying the size of refinement boundaries
LoopControl: Add missing copyprivate
CarpetIONirvana: Require MPI
Allow padding in transport operators
CarpetLib: Re-enable OpenMP collapse clauses
CarpetLib: Set up all timers on all processes all the time
CarpetLib: Make th::time_interpolation_during_regridding public
CarpetIOF5: Various improvements
Carpet: Simplify code
Carpet: Turn time level / prolongation operator warning into an info message
CarpetLib: Support padding in enovol prolongation operator
Carpet: Re-apply init_fill_timelevels after postregridinitial
CarpetLib: Use "process" instead of "processor" in comments and output
CarpetLib: Add default case to switch statement
CarpetLib: Correct process number in bbox output
Carpet: Initialise TimerNode fields in correct order
Carpet: Avoid unused and uninitialised variables
Carpet: Check return value of dup()
CarpetRegrid2: Correct output of refinement level during AMR
CarpetRegrid2: More verbose info output during regridding
CarpetLib: Check HRSCC_GLL_ELEMENT_HH instead of HRSCC_HH
CarpetLib, CycleClock: Move cycle counting clock into its own thorn
Carpet: Use dup2 instead of dup do control destination file descriptor
CarpetLib: Ensure allocated memory is aligned for vectorisation
CycleClock: Reduce wait time for determining cycle tick
CycleClock: Determine elapsed time via integer arithmetic
CycleClock: Optimise x86-64 PGI implementation
CycleClock: Support Blue Gene/Q
CycleClock: Abort compile if architecture is not supported
CycleClock: Undo debugging change
Carpet: Remove backup files
CarpetReduce: Remove empty file
Carpet: Initialise all timing variables
CarpetReduce: Support array padding (cctk_ash)
CarpetReduce: Clean up code defining reduction weight masks
CycleClock: Handle Cray compiler
CarpetLib: Rewrite array padding
LoopControl: Rewrite
LoopControl: Circumvent Cray compiler bug
LoopControl: Run tests only with 2 processes
CarpetLib: Remove unused variables
CarpetIOBasic: Simplify code and avoid compiler warnings
CarpetIOHDF5: Remove unused variables, initialise other variable to avoid compiler warnings
CarpetIOHDF5: Make variable unsigned to avoid compiler warning
CarpetLib: Explicitly convert values to signed
CarpetLib: Use C++ wrapper madd instead of mul and add
CarpetLib: Disable DGFE operators if building without DGFE to avoid compiler warnings
CarpetIOBasic: Simplify code and avoid compiler warnings (again)
Carpet: Correct load-balancing algorithm to really prefer splitting in the z direction
LoopControl: Store loop bounds in the provided variables
LoopControl: Correct indexing error with vectorisation
CarpetIOASCII: Update test results after domain decomposition change
Carpet: Return cctk_ash instead of cctk_lsh in CCTK_ArrayGroupSizeB
Carpet: Use cctk_ash where necessary in poisoning and checksumming
CarpetLib: Rename argument to vect::index from lsh to ash
LoopControl: Add assert statements to loop macros to catch indexing errors
LoopControl: Update Fortran macros to follow cctk_Loop API
TestLoopControl: New thorn
TestLoopControl: Use module loopcontrol
LoopControl: Correct Fortran macros; provide Fortran wrappers
LoopControl: More self-checking
TestLoopControl: Correct errors in testing ghost zones
LoopControl: Rename macro arguments to help avoid name clashes
CarpetLib, LoopControl: Correct required/optional capabilities
CarpetLib: Implement and correct head, tail, init, last in the vect class
CarpetRegrid2: Correct min_fraction
LoopControl: Correct Fortran OpenMP definitions
LoopControl: Add debug assert statements when array padding is enabled
LoopControl: Avoid compiler warnings
CarpetRegrid2: Output all verbose messages with veryverbose as well
CarpetRegrid2: Correct another error in handling min_fraction
LoopControl: Reduce number of arguments passed to selftest routine
LoopControl: Remove restrict qualifiers from shared data structures
CarpetLib: Change default to interpolate_from_buffer_zones=no
Carpet: Beautify screen output
CarpetLib: Do not memoize OpenMP thread id
LoopControl: Remove trivial vector lengths for j and k direction
LoopControl: Simplify STL data type usage
LoopControl: Improve OpenMP parallelisation
CarpetProlongateTest: Correct default parameter values for interpolator test
LoopControl: Output statistics to a file instead of stdout
LoopControl: Share cache lines for SMT threads
LoopControl: Correct parallelisation errors (mark variables volatile)
CarpetReduce: Improve code layout
Revert "CarpetLib: Change default to interpolate_from_buffer_zones=no"
CarpetLib: Store level-wide set of buffer zones
CarpetLib: Correct implementation of "don't interpolate from buffer zones"
CarpetLib: Set interpolate_from_buffer_zones to "no" by default
Carpet: New aliased function GetRegriddingEpochs
CarpetIOASCII: Use CCTK_BUILTIN_UNREACHABLE
CarpetIntegrateTest: Use ReflectionSymmetry for bitant mode
Replace Cactus complex number type with C/C++ complex numbers
CarpetProlongateTest: Increase test case tolerances for higher order prolongation
CarpetIntegrateTest: Modernize test parameter file
Carpet: Add CactusTimer functions to get all clock values of a timer
Carpet: Output timer tree at shutdown
CycleClock: Add parameter to disable registering a Cactus clock
LoopControl: Output statistics into per-process files, not into a single file
Carpet: Output all clocks in the timer tree
Carpet: Use C++ style cast to avoid compiler warning
Carpet: Correct output of load balancing statistics
CarpetReduce: Don't require a valid cctkGH unless really needed
CarpetReduce: New parameter min_max_time_interpolation
LoopControl: Simplify #if sequence
LoopControl: Improve OpenMP parallelisation of get_num_fine_threads
CarpetIO*: Output complex numbers as pair of real numbers
Requirements: New thorn
Replace abs() by fabs()
Requirements: Use vector instead of set to store ignored variables
Requirements: White space cleanup
Carpet: Call Requirements before, not after the respective actions
Requirements: Beautify code
Requirements: Remove dependency on defs.hh
Requirements: Remove duplication from info messages
Requirements: Add todo-note to invalidate non-written regions in partial projections
Requirements: Break lines to make code more readable
Requirements: Minor code re-shuffling and cleanup
Carpet, Requirements: Pass timelevel_offset
Requirements: Some source code cleanup
Requirements: Add Frank's html generator script
Requirements: Rename parameter print_changes to output_changes
Requirements: Simplify logic to detect changes in gridpoint_t
Requirements: Warn about Requirements.hh being publicly visible
Requirements: Re-order if statement (no change in meaning)
Requirements: Modify iteration arguments in Requirements.hh
Carpet: Do not restrict variables marked as "don't restrict"
Requirements: Remove some duplicate code
Requirements: Correct handling of timelevels in BeforeRoutine and AfterRoutine
Carpet: Don't call Requirements when only asking about allocated storage
Requirements: Don't use identifiers starting with an underscore
Requirements: Unify order of #include statements
Requirements: Change location output format
Requirements: Output iteration number in warnings and error messages
Requirements: Change location output order; output map before timelevel
Requirements: Use location_t to output warnings and errors
CarpetLib: Remove unused/unfinished bboxtree class
Carpet: Exit restriction early if no groups should be restricted
Carpet: Small performance improvement in SyncGroupsByDir
Carpet: Take tapering into account during postrestrict
Requirements: Whitespace change
CarpetLib: Vectors is currently required, not optional
CarpetReduce: Offset reduction weights when periodic boundaries are used
CarpetLib: Correct alignment mechanism when allocating memory
Frank Löffler (15):
CarpetIOHDF5: cast string constant to char array to get rid of compiler warning
CarpetIOHDF5: comment unused variable (commented because code using it is also commented
CarpetRegrid2: Allow pseudo-2D domains
CarpetRegrid2: Testsuite for trivial domains in z direction
Merge branch 'master' of carpetcode.org:carpet
output more verbose info (variable index and nr of timelevels
make gridpoint_t a class
make bool members of gridpoint_t class private, provide accessors and use them
Merge branch 'master' of carpetcode.org:carpet
Let set_ accessors return whether something was changed
Make set_* functions be void again, add location_t struct (unused so far)
use parameter to enable output if state of variable changes
Requirements: pass iteration down and print in debug output; also print when something changes (readable string)
swap upper/lower case for location output
Requirements: fix a couple of bugs in the debug output
Ian Hinder (13):
Support more than one hierarchy of timers
Add a timer tree for measuring time spent in each Carpet mode
Requirements: Add comments
Requirements: Move clause class into separate files
Requirements: Move clauses class and some utility functions to separate files
Requirements: Move all_clauses class to a separate file
Requirements: Move location class to a separate file
Revert part of "Requirements: Beautify code"
Requirements: Move gridpoint class to a separate file
Requirements: Move all_state class to separate files
Requirements: Move flag variables into gridpoint class
Requirements: Pass all_clauses as a reference argument rather than using a global variable
Requirements: Remove unneeded #includes
Peter Diener (2):
Fix in order to compile with IBM compilers.
Merge branch 'master' of carpetgit at carpetcode.org:carpet
Roland Haas (14):
Carpet: fix mg level count typo during intialization
CarpetIOASCII: do not output coordinate column labels for grid arrays in
CarpetIOHDF5: output index files for sliced output if requested
CarpetIOHDF5: close all HDF5 objects when output file is closed
CarpetIOHDF5: fix check for missing datasets when called in FileReader mode
CarpetLib: add volume averaged cc eno operator
CarpetLib: support padding in non-OpenMP transport operator
CarpetLib: clear boundary slice offsets in dh::regrid()
CarpetProlongateTest: restrict tests to 2 processes, reduce regions,
CarpetEvolutionMask: compute a mask indicating where buffers are
CarpetEvolutionMask: limit buffer_mask test to one process
CarpetIOHDF5: remove index files along with checkpoint files
Requirements: add missing include file
LoopControl: disable smt by default
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