[ET Trac] [Einstein Toolkit] #1888: HDF5 output causing termination with std::out_of_range error

[Einstein Toolkit]

#1888: HDF5 output causing termination with std::out_of_range error
---------------------------+------------------------------------------------
 Reporter:  barry.wardell  |       Owner:  eschnett           
     Type:  defect         |      Status:  new                
 Priority:  unset          |   Milestone:                     
Component:  Carpet         |     Version:  development version
 Keywords:                 |  
---------------------------+------------------------------------------------
 I am getting an std::out_of_range error when I try to run a simulation
 with the latest development version of the Einstein Toolkit. Specifically,
 the error I am getting is:

 {{{
 terminate called after throwing an instance of 'std::out_of_range'
 what():  vector::_M_range_check
 }}}

 The backtrace provides more detailed information:
 {{{
 Backtrace from rank 0 pid 3146:
 1. CarpetLib::signal_handler(int)
 [/ichec/work/ucd01/bwardell/EinsteinToolkit/bbh/SIMFACTORY/exe/cactus_sim(_ZN9CarpetLib14signal_handlerEi+0x8e)
 [0x12a24de]]
 2. /lib64/libc.so.6(+0x32920) [0x2aaab2e53920]
 3. /lib64/libc.so.6(gsignal+0x35) [0x2aaab2e53885]
 4. /lib64/libc.so.6(abort+0x181) [0x2aaab2e54e61]
 5. __gnu_cxx::__verbose_terminate_handler()
 [/usr/lib64/libstdc++.so.6(_ZN9__gnu_cxx27__verbose_terminate_handlerEv+0x11d)
 [0x2aaab29698ad]]
 6. /usr/lib64/libstdc++.so.6(+0x63986) [0x2aaab2967986]
 7. /usr/lib64/libstdc++.so.6(+0x639b3) [0x2aaab29679b3]
 8. /usr/lib64/libstdc++.so.6(+0x63bf3) [0x2aaab2967bf3]
 9. std::__throw_out_of_range(char const*)
 [/usr/lib64/libstdc++.so.6(_ZSt20__throw_out_of_rangePKc+0x5d)
 [0x2aaab29b92cd]]
 a. CarpetIOHDF5::IOHDF5<1>::WriteHDF5(_cGH const*, int&, int&,
 std::vector<gdata*, std::allocator<gdata*> >, bbox<int, 3> const&, int,
 vect<int, 3> const&, vect<int, 1> const&, int, int, int, int
 , int, int, double, vect<double, 3> const&, vect<double, 3> const&)
 [/ichec/work/ucd01/bwardell/EinsteinToolkit/bbh/SIMFACTORY/exe/cactus_sim(_ZN12CarpetIOHDF56IOHDF5ILi1EE9WriteHDF5EPK4_cGHRiS
 5_St6vectorIP5gdataSaIS8_EERK4bboxIiLi3EEiRK4vectIiLi3EERKSF_IiLi1EEiiiiiidRKSF_IdLi3EESO_+0x2516)
 [0x123d526]]
 b. CarpetIOHDF5::IOHDF5<1>::OutputDirection(_cGH const*, int, std::string,
 std::string, vect<int, 1> const&, bool, bool)
 [/ichec/work/ucd01/bwardell/EinsteinToolkit/bbh/SIMFACTORY/exe/cactus_si
 m(_ZN12CarpetIOHDF56IOHDF5ILi1EE15OutputDirectionEPK4_cGHiSsSsRK4vectIiLi1EEbb+0xf28)
 [0x1239378]]
 c. CarpetIOHDF5::IOHDF5<1>::OutputVarAs(_cGH const*, char const*, char
 const*)
 [/ichec/work/ucd01/bwardell/EinsteinToolkit/bbh/SIMFACTORY/exe/cactus_sim(_ZN12CarpetIOHDF56IOHDF5ILi1EE11OutputVa
 rAsEPK4_cGHPKcS6_+0x4a4) [0x1237004]]
 d. CarpetIOHDF5::IOHDF5<1>::TriggerOutput(_cGH const*, int)
 [/ichec/work/ucd01/bwardell/EinsteinToolkit/bbh/SIMFACTORY/exe/cactus_sim(_ZN12CarpetIOHDF56IOHDF5ILi1EE13TriggerOutputEPK4_cGHi+0x1b
 3) [0x1236a23]]
 e. CarpetIOHDF5::IOHDF5<1>::OutputGH(_cGH const*)
 [/ichec/work/ucd01/bwardell/EinsteinToolkit/bbh/SIMFACTORY/exe/cactus_sim(_ZN12CarpetIOHDF56IOHDF5ILi1EE8OutputGHEPK4_cGH+0x368)
 [0x1236568]]
 f. Carpet::OutputGH(_cGH const*)
 [/ichec/work/ucd01/bwardell/EinsteinToolkit/bbh/SIMFACTORY/exe/cactus_sim(_ZN6Carpet8OutputGHEPK4_cGH+0x6cb)
 [0x1136d1b]]
 10.
 /ichec/work/ucd01/bwardell/EinsteinToolkit/bbh/SIMFACTORY/exe/cactus_sim()
 [0x1132cf1]
 11. Carpet::Initialise(tFleshConfig*)
 [/ichec/work/ucd01/bwardell/EinsteinToolkit/bbh/SIMFACTORY/exe/cactus_sim(_ZN6Carpet10InitialiseEP12tFleshConfig+0x767)
 [0x1134b17]]
 12.
 /ichec/work/ucd01/bwardell/EinsteinToolkit/bbh/SIMFACTORY/exe/cactus_sim(main+0x99)
 [0x3b2ed29]
 13. /lib64/libc.so.6(__libc_start_main+0xe6) [0x2aaab2e3fc36]
 14.
 /ichec/work/ucd01/bwardell/EinsteinToolkit/bbh/SIMFACTORY/exe/cactus_sim()
 [0xd3a609]
 }}}
 This suggests the problem is in CarpetIOHDF5, and indeed reverting Carpet
 commit cf2e12631ed9b6e1eac95ae5f311fdbe5100db75 makes the problem go away.

 The parameter file I am using is this one:
 [https://bitbucket.org/simulationtools/simulationtoolstestdata/src/master/Simulations/bbh/SIMFACTORY/par/bbh.par
 bbh.par].

-- 
Ticket URL: <https://trac.einsteintoolkit.org/ticket/1888>
Einstein Toolkit <http://einsteintoolkit.org>
The Einstein Toolkit