[ET Trac] #2598: thornyflat - production run segmentation fault

[Maria]

#2598: thornyflat - production run segmentation fault

 Reporter: Maria
   Status: new
Milestone: 
  Version: ET_2021_11
     Type: bug
 Priority: major
Component: 

Simfactory scripts for ThornyFlat give segmentation fault in production run. I am attaching the cfg, ini, run and sub scripts. 

In the simulations directory, the SIMFACTORY directory does not have inside the subdirectories: exe, cfg, run and par and NODES is empty. The only file is the properties.ini, which includes:

\_\_\_\_

Loading torque version 6.1.3 : dev/torque/6.1.3

Loading openmpi version 4.1.2\_gcc112 : parallel/openmpi/4.1.2\_gcc112

Loading openblas version 0.3.19\_gcc112 : libs/openblas/0.3.19\_gcc112

\+ set -e

\+ cd /scratch/mbh0012/simulations/bnsG2/output-0000-active

\+ echo Checking:

\+ pwd

\+ hostname

\+ date

\+ cat

\+ echo Environment:

\+ export GMON\_OUT\_PREFIX=gmon.out

\+ GMON\_OUT\_PREFIX=gmon.out

\+ export CACTUS\_NUM\_PROCS=2

\+ CACTUS\_NUM\_PROCS=2

\+ export CACTUS\_NUM\_THREADS=20

\+ CACTUS\_NUM\_THREADS=20

\+ export OMP\_NUM\_THREADS=20

\+ OMP\_NUM\_THREADS=20

\+ env

\+ sort

\+ echo Starting:

\+\+ date \+%s

\+ export CACTUS\_STARTTIME=1642991790

\+ CACTUS\_STARTTIME=1642991790

\+ mpiexec -n 2 -npernode 2 /scratch/mbh0012/simulations/bnsG2/SIMFACTORY/exe/cactus\_nst -L 3 /scratch/mbh0012/simulations/bnsG2/output-0000/nsnstohmns.par

\[trcis001:09698\] \*\*\* Process received signal \*\*\*

\[trcis001:09698\] Signal: Segmentation fault \(11\)

\[trcis001:09698\] Signal code:  \(128\)

\[trcis001:09698\] Failing at address: \(nil\)

\[trcis001:09698\] \[ 0\] /lib64/libpthread.so.0\(\+0xf630\)\[0x2b4fc7e60630\]

\[trcis001:09698\] \[ 1\] /shared/software/parallel/openmpi/4.1.2\_gcc112/lib/libopen-rte.so.40\(orte\_get\_attribute\+0x21\)\[0x2b4fc6f4b101\]

\[trcis001:09698\] \[ 2\] /shared/software/parallel/openmpi/4.1.2\_gcc112/lib/libopen-rte.so.40\(orte\_plm\_base\_setup\_job\+0xf0\)\[0x2b4fc6f83530\]

\[trcis001:09698\] \[ 3\] /lib64/libevent\_core-2.0.so.5\(event\_base\_loop\+0x774\)\[0x2b4fc7a2f3a4\]

\[trcis001:09698\] \[ 4\] mpiexec\[0x40133a\]

\[trcis001:09698\] \[ 5\] /lib64/libc.so.6\(\_\_libc\_start\_main\+0xf5\)\[0x2b4fc808f555\]

\[trcis001:09698\] \[ 6\] mpiexec\[0x40114e\]

\[trcis001:09698\] \*\*\* End of error message \*\*\*

/scratch/mbh0012/simulations/bnsG2/output-0000/SIMFACTORY/RunScript: line 24:  9698 Segmentation fault      \(core dumped\) mpiexec -n 2 -npernode 2 /scratch/mbh0012/simulations/bnsG2/SIMFACTORY/exe/cactus\_nst -L 3 /scratch/mbh0012/simulations/bnsG2/output-0000/nsnstohmns.par
attachment: thornyflat.cfg (https://api.bitbucket.org/2.0/repositories/einsteintoolkit/tickets/issues/2598/attachments/thornyflat.cfg)
attachment: thornyflat.ini (https://api.bitbucket.org/2.0/repositories/einsteintoolkit/tickets/issues/2598/attachments/thornyflat.ini)
attachment: thornyflat.run (https://api.bitbucket.org/2.0/repositories/einsteintoolkit/tickets/issues/2598/attachments/thornyflat.run)
attachment: thornyflay.sub (https://api.bitbucket.org/2.0/repositories/einsteintoolkit/tickets/issues/2598/attachments/thornyflay.sub)


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Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2598/thornyflat-production-run-segmentation
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