[Users] Problem compiling the Einstein Toolkit on Kraken
Barry Wardell
barry.wardell at aei.mpg.de
Tue May 25 06:58:29 CDT 2010
Hi,
I have been trying to compile the Einstein Toollkit on Kraken and have
encountered a problem with the AHFinder thorn. I looks to me like a
compiler problem. The error message I get is:
Preprocessing
/nics/a/proj/cactus/barrywar/xt5/Cactus/arrangements/EinsteinAnalysis/AHFinder/src/AHFinder_pow.F
Compiling
/nics/a/proj/cactus/barrywar/xt5/Cactus/arrangements/EinsteinAnalysis/AHFinder/src/AHFinder_pow.F
*** glibc detected *** /opt/pgi/9.0.4/linux86-64/9.0-4/bin/pgf902:
realloc(): invalid next size: 0x00000000009f2e80 ***
======= Backtrace: =========
/lib64/libc.so.6[0x2b93a06a534e]
/lib64/libc.so.6[0x2b93a06a7fbd]
/lib64/libc.so.6(__libc_realloc+0x11c)[0x2b93a06a925c]
/opt/pgi/9.0.4/linux86-64/9.0-4/bin/pgf902[0x42a628]
/opt/pgi/9.0.4/linux86-64/9.0-4/bin/pgf902[0x442772]
/opt/pgi/9.0.4/linux86-64/9.0-4/bin/pgf902[0x437d66]
/opt/pgi/9.0.4/linux86-64/9.0-4/bin/pgf902[0x62d2d5]
/lib64/libc.so.6(__libc_start_main+0xf4)[0x2b93a0657154]
/opt/pgi/9.0.4/linux86-64/9.0-4/bin/pgf902(tolower+0x3a)[0x4030aa]
======= Memory map: ========
00400000-007de000 r-xp 00000000 00:10 4860079
/opt/pgi/9.0.4/linux86-64/9.0-4/bin/pgf902
008de000-00919000 rwxp 003de000 00:10 4860079
/opt/pgi/9.0.4/linux86-64/9.0-4/bin/pgf902
00919000-00ad5000 rwxp 00919000 00:00 0
[heap]
2b93a051e000-2b93a0539000 r-xp 00000000 00:10 7042057
/lib64/ld-2.4.so
2b93a0539000-2b93a053f000 rwxp 2b93a0539000 00:00 0
2b93a056e000-2b93a056f000 rwxp 2b93a056e000 00:00 0
2b93a0590000-2b93a05d7000 rwxp 2b93a053f000 00:00 0
2b93a0638000-2b93a063a000 rwxp 0001a000 00:10 7042057
/lib64/ld-2.4.so
2b93a063a000-2b93a0761000 r-xp 00000000 00:10 7041955
/lib64/libc-2.4.so
2b93a0761000-2b93a0861000 ---p 00127000 00:10 7041955
/lib64/libc-2.4.so
2b93a0861000-2b93a0864000 r-xp 00127000 00:10 7041955
/lib64/libc-2.4.so
2b93a0864000-2b93a0866000 rwxp 0012a000 00:10 7041955
/lib64/libc-2.4.so
2b93a0866000-2b93a086c000 rwxp 2b93a0866000 00:00 0
2b93a086c000-2b93a0876000 r-xp 00000000 00:10 7041972
/lib64/libnss_files-2.4.so
2b93a0876000-2b93a0975000 ---p 0000a000 00:10 7041972
/lib64/libnss_files-2.4.so
2b93a0975000-2b93a0977000 rwxp 00009000 00:10 7041972
/lib64/libnss_files-2.4.so
2b93a0977000-2b93a0989000 r-xp 00000000 00:10 7042051
/lib64/libnss_ldap.so.2
2b93a0989000-2b93a0a88000 ---p 00012000 00:10 7042051
/lib64/libnss_ldap.so.2
2b93a0a88000-2b93a0a8a000 rwxp 00011000 00:10 7042051
/lib64/libnss_ldap.so.2
2b93a0a8a000-2b93a0a95000 rwxp 2b93a0a8a000 00:00 0
2b93a0a95000-2b93a0ace000 r-xp 00000000 00:10 10175636
/usr/lib64/libldap-2.3.so.0.2.20
2b93a0ace000-2b93a0bce000 ---p 00039000 00:10 10175636
/usr/lib64/libldap-2.3.so.0.2.20
2b93a0bce000-2b93a0bd0000 rwxp 00039000 00:10 10175636
/usr/lib64/libldap-2.3.so.0.2.20
2b93a0bd0000-2b93a0bdd000 r-xp 00000000 00:10 10175634
/usr/lib64/liblber-2.3.so.0.2.20
2b93a0bdd000-2b93a0cdd000 ---p 0000d000 00:10 10175634
/usr/lib64/liblber-2.3.so.0.2.20
2b93a0cdd000-2b93a0cde000 rwxp 0000d000 00:10 10175634
/usr/lib64/liblber-2.3.so.0.2.20
2b93a0cde000-2b93a0cf5000 r-xp 00000000 00:10 10125323
/usr/lib64/libgssapi_krb5.so.2.2
2b93a0cf5000-2b93a0df5000 ---p 00017000 00:10 10125323
/usr/lib64/libgssapi_krb5.so.2.2
2b93a0df5000-2b93a0df6000 rwxp 00017000 00:10 10125323
/usr/lib64/libgssapi_krb5.so.2.2
2b93a0df6000-2b93a0df8000 r-xp 00000000 00:10 7041961
/lib64/libdl-2.4.so
2b93a0df8000-2b93a0ef8000 ---p 00002000 00:10 7041961
/lib64/libdl-2.4.so
2b93a0ef8000-2b93a0efa000 rwxp 00002000 00:10 7041961
/lib64/libdl-2.4.so
2b93a0efa000-2b93a0f0d000 r-xp 00000000 00:10 7041966
/lib64/libnsl-2.4.so
2b93a0f0d000-2b93a100c000 ---p 00013000 00:10 7041966
/lib64/libnsl-2.4.so
2b93a100c000-2b93a100e000 rwxp 00012000 00:10 7041966
/lib64/libnsl-2.4.so
2b93a100e000-2b93a1010000 rwxp 2b93a100e000 00:00 0
2b93a1010000-2b93a1021000 r-xp 00000000 00:10 7041983
/lib64/libresolv-2.4.so
2b93a1021000-2b93a1120000 ---p 00011000 00:10 7041983
/lib64/libresolv-2.4.so
2b93a1120000-2b93a1122000 rwxp 00010000 00:10 7041983
/lib64/libresolv-2.4.so
2b93a1122000-2b93a1124000 rwxp 2b93a1122000 00:00 0
2b93a1124000-2b93a113b000 r-xp 00000000 00:10 10125347
/usr/lib64/libsasl2.so.2.0.21
2b93a113b000-2b93a123b000 ---p 00017000 00:10 10125347
/usr/lib64/libsasl2.so.2.0.21
2b93a123b000-2b93a123c000 rwxp 00017000 00:10 10125347
/usr/lib64/libsasl2.so.2.0.21
2b93a123c000-2b93a127c000 r-xp 00000000 00:10 10125317
/usr/lib64/libssl.so.0.9.8
2b93a127c000-2b93a137c000 ---p 00040000 00:10 10125317
/usr/lib64/libssl.so.0.9.8
2b93a137c000-2b93a1382000 rwxp 00040000 00:10 10125317
/usr/lib64/libssl.so.0.9.8
2b93a1382000-2b93a14c0000 r-xp 00000000 00:10 10175951
/usr/lib64/libcrypto.so.0.9.8
2b93a14c0000-2b93a15bf000 ---p 0013e000 00:10 10175951
/usr/lib64/libcrypto.so.0.9.8
2b93a15bf000-2b93a15e1000 rwxp 0013d000 00:10 10175951
/usr/lib64/libcrypto.so.0.9.8
2b93a15e1000-2b93a15e5000 rwxp 2b93a15e1000 00:00 0
2b93a15e5000-2b93a1659000 r-xp 00000000 00:10 10125337
/usr/lib64/libkrb5.so.3.2
2b93a1659000-2b93a1759000 ---p 00074000 00:10 10125337
/usr/lib64/libkrb5.so.3.2
2b93a1759000-2b93a175d000 rwxp 00074000 00:10 10125337
/usr/lib64/libkrb5.so.3.2
2b93a175d000-2b93a177f000 r-xp 00000000 00:10 10125327
/usr/lib64/libk5crypto.so.3.0
2b93a177f000-2b93a187e000 ---p 00022000 00:10 10125327
/usr/lib64/libk5crypto.so.3.0
2b93a187e000-2b93a1880000 rwxp 00021000 00:10 10125327
/usr/lib64/libk5crypto.so.3.0
2b93a1880000-2b93a1882000 r-xp 00000000 00:10 7041964
/lib64/libcom_err.so.2.1
2b93a1882000-2b93a1981000 ---p 00002000 00:10 7041964
/lib64/libcom_err.so.2.1
2b93a1981000-2b93a1982000 rwxp 00001000 00:10 7041964
/lib64/libcom_err.so.2.1
2b93a1982000-2b93a1985000 r-xp 00000000 00:10 10125339
/usr/lib64/libkrb5support.so.0.0
2b93a1985000-2b93a1a84000 ---p 00003000 00:10 10125339
/usr/lib64/libkrb5support.so.0.0
2b93a1a84000-2b93a1a85000 rwxp 00002000 00:10 10125339
/usr/lib64/libkrb5support.so.0.0
2b93a1a85000-2b93a1a89000 r-xp 00000000 00:10 7041970
/lib64/libnss_dns-2.4.so
2b93a1a89000-2b93a1b88000 ---p 00004000 00:10 7041970
/lib64/libnss_dns-2.4.so
2b93a1b88000-2b93a1b8a000 rwxp 00003000 00:10 7041970
/lib64/libnss_dns-2.4.so
2b93a1c00000-2b93a1c21000 rwxp 2b93a1c00000 00:00 0
2b93a1c21000-2b93a1d00000 ---p 2b93a1c21000 00:00 0
2b93a1d00000-2b93a1d0d000 r-xp 00000000 00:10 7041994
/lib64/libgcc_s.so.1
2b93a1d0d000-2b93a1e0c000 ---p 0000d000 00:10 7041994
/lib64/libgcc_s.so.1
2b93a1e0c000-2b93a1e0d000 rwxp 0000c000 00:10 7041994
/lib64/libgcc_s.so.1
7fff0a571000-7fff0a58c000 rwxp 7fff0a571000 00:00 0
[stack]
ffffffffff600000-ffffffffffe00000 ---p 00000000 00:00 0
[vdso]
pgf90-Fatal-/opt/pgi/9.0.4/linux86-64/9.0-4/bin/pgf902 TERMINATED by
signal 6
Arguments to /opt/pgi/9.0.4/linux86-64/9.0-4/bin/pgf902
/opt/pgi/9.0.4/linux86-64/9.0-4/bin/pgf902 /tmp/pgf90wDYfc7plxihs.ilm
-fn
/nics/a/proj/cactus/barrywar/xt5/Cactus/configs/ET/build/AHFinder/AHFinder_pow.f
-debug -x 120 0x200 -opt 3 -terse 1 -inform warn -x 51 0x20 -x 119
0xa10000 -x 122 0x40 -x 123 0x1000 -x 127 4 -x 127 17 -x 19 0x400000 -x
28 0x40000 -x 70 0x8000 -x 122 1 -quad -vect 56 -y 34 16 -x 34 0x8 -x 32
1048576 -y 19 8 -y 35 0 -x 42 0x30 -x 39 0x40 -x 39 0x80 -x 34 0x400000
-x 149 1 -x 150 1 -x 59 4 -x 59 4 -tp k8-64e -x 124 0x1400 -y 15 2 -x 57
0x3b0000 -x 58 0x48000000 -x 49 0x100 -x 120 0x200 -astype 0 -x 121 1 -x
124 1 -x 125 0x200 -x 9 1 -x 42 0x14200000 -x 72 0x1 -x 136 0x11 -x 80
0x800000 -quad -x 119 0x10000000 -x 129 0x40000000 -x 129 2 -mp -x 69
0x200 -x 69 0x400 -x 0 0x1000000 -x 2 0x100000 -x 0 0x2000000 -x 161
0xcff7 -x 162 0xcff7 -x 0 0x1000000 -x 2 0x100000 -x 0 0x2000000 -x 161
128 -x 162 128 -x 161 53239 -x 162 53239 -x 0 0x2000000 -cmdline '+pgf90
/nics/a/proj/cactus/barrywar/xt5/Cactus/configs/ET/build/AHFinder/AHFinder_pow.f
-g -Mx,125,0x200 -fastsse -fast -Mvect=sse -Mscalarsse -Mcache_align
-Mflushz -O3 -Mvect=assoc -mp=nonuma -Minfo -Minfo=mp -Mneginfo -c -o
/nics/a/proj/cactus/barrywar/xt5/Cactus/configs/ET/build/AHFinder/AHFinder_pow.F.o'
-asm /tmp/pgf90MDYfYzxbMlTG.sm
make[3]: *** [AHFinder_pow.F.o] Error 127
make[2]: *** [make.checked] Error 2
make[1]: ***
[/nics/a/proj/cactus/barrywar/xt5/Cactus/configs/ET/lib/libthorn_AHFinder.a]
Error 2
make: *** [ET] Error 2
Uncaught exception from user code:
Error 2 occurred while executing command "make -j2 ET" at
/nics/a/proj/cactus/barrywar/xt5/Cactus/simfactory/sim line 4500.
at /nics/a/proj/cactus/barrywar/xt5/Cactus/simfactory/sim line 4500
main::execute('make -j2 ET') called at
/nics/a/proj/cactus/barrywar/xt5/Cactus/simfactory/sim line 1682
main::command_build('ET') called at
/nics/a/proj/cactus/barrywar/xt5/Cactus/simfactory/sim line 448
Does anybody have an idea how to fix this?
Barry
More information about the Users
mailing list