[Users] ETK in NERSC machines (Hopper/Carver) does not work properly

Jose Fiestas Iquira jafiestas at lbl.gov
Fri Mar 9 18:41:35 CST 2012


Dear colleagues,

I was trying the last days to install an own application based on ETK in
NERSC machines (Hopper/Carver), having some problems during the compilation.
Before trying to find the real problem, I started from scratch and realize
I can not even checkout ETK properly.
Does somebody tried it in machines different as LONI machines since the
last release? Would appreciate any experience about it.
Below my steps:


1. GetComponents <Einstein Toolkit>  (release version)
curl -O https://raw.github.com/gridaphobe/CRL/master/GetComponents
..............................
*183 components checked out.*
*  0 components updated.*
*
*
*  Unable to process simfactory2*
*  Unable to process LSUThorns/QuasiLocalMeasures*
*  Unable to process LSUThorns/SummationByParts*
*  Unable to process LSUThorns/Vectors*
*
*
*Summary of Warnings:*
*
*
*Could not checkout module simfactory2*
*
*
*
*
*Could not checkout module LSUThorns/QuasiLocalMeasures*
*
*
*
*
*Could not checkout module LSUThorns/SummationByParts*
*
*
*
*
*Could not checkout module LSUThorns/Vectors*
*
*

*  Time Elapsed: 26 minutes, 19 seconds*
..............................................

2. GetComponent  <WaveDemo>
./GetComponents
http://cactuscode.org/documentation/tutorials/wavetoydemo/WaveDemo.th

* Went OK*
*
*
3.  cd Cactus
gmake WaveDemo-config
gmake WaveDemo


*------------------------------------------------------*
*Warnings were generated during execution of the CST*
*------------------------------------------------------*
*
*
*
*
*CST error 1:*
*  -> Duplicate thornname LocalReduce in CactusBase and CactusNumerical*
*
*
*
*
*CST error 2:*
*  -> Thorn 'CarpetLib' requires the capability 'Vectors'.*
*     Please add a thorn that provides 'Vectors' to your ThornList or
remove 'CarpetLib' from it !*
*
*
*
*
*CST error 3:*
*  -> Thorn 'ML_BSSN' requires the capability 'Vectors'.*
*     Please add a thorn that provides 'Vectors' to your ThornList or
remove 'ML_BSSN' from it !*
*
*
*
*
*CST error 4:*
*  -> Thorn 'ML_BSSN_O2' requires the capability 'Vectors'.*
*     Please add a thorn that provides 'Vectors' to your ThornList or
remove 'ML_BSSN_O2' from it !*
*
*
*
*
*CST error 5:*
*  -> ID_BIN_BH (thorn Meudon_Bin_BH) inherits from SummationByParts*
*     No thorn in your current ThornList implements SummationByParts*
*     Either remove Meudon_Bin_BH, or add a thorn to your*
*      ThornList implementing SummationByParts*
*     Available thorns in arrangements directory implementing
SummationByParts:*
*        LSUThorns/SummationByParts*
*
*
*
*
*CST error 6:*
*  -> MEUDON_BIN_NS (thorn Meudon_Bin_NS) inherits from SummationByParts*
*     No thorn in your current ThornList implements SummationByParts*
*     Either remove Meudon_Bin_NS, or add a thorn to your*
*      ThornList implementing SummationByParts*
*     Available thorns in arrangements directory implementing
SummationByParts:*
*        LSUThorns/SummationByParts*
*
*
*
*
*CST error 7:*
*  -> Configuration script for thorn BLAS returned exit code 1*
*     Error message: 'Error while building BLAS. Aborting.'*
*
*
*
*
*CST error 8:*
*  -> Configuration script for thorn LAPACK returned exit code 1*
*     Error message: 'Error while building LAPACK. Aborting.'*
*
*
*------------------------------------------------------*
*
*
*gmake[1]: ***
[/project/projectdirs/snfactry/hshukla/CACTUS/Cactus/configs/WaveDemo/config-data/make.thornlist]
Error 1*
*gmake: *** [WaveDemo] Error 2*
*
*
*
*
*
4.  Copied LSUThorns by hand and repeated step 3 and got the same errors.
*

*183 components checked out.*
*  0 components updated.*
*
*
*  Unable to process simfactory2*
*  Unable to process LSUThorns/QuasiLocalMeasures*
*  Unable to process LSUThorns/SummationByParts*
*  Unable to process LSUThorns/Vectors*
*
*
*Summary of Warnings:*
*
*
*Could not checkout module simfactory2*
*
*
*
*
*Could not checkout module LSUThorns/QuasiLocalMeasures*
*
*
*
*
*Could not checkout module LSUThorns/SummationByParts*
*
*
*
*
*Could not checkout module LSUThorns/Vectors*
*
*

*  Time Elapsed: 26 minutes, 19 seconds*

Best,
Jose
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