[Users] McLachlan initial conditions - Re: ETK in NERSC machines (Hopper/Carver) does not work properly

[Jose Fiestas Iquira]

Hello Ian,

Probably I was suffering some of these problems. Finally I could checkout
and compile ETK in Hopper. Though,  I could not submit a run using
simfactory/bin/sim submit due to an authentication error. But we are
interested to run our own simulation, so I wore a script for Hopper and
sent it using exe/cactus_sim . It worked well.

We are using McLachlan for the coalescence of a binary, and want to change
the initial conditions, which are written out in TwoPunctures, right? In
which file can I change these conditions for different simulations?

Thanks,
Jose


On Mon, Mar 12, 2012 at 4:24 AM, Ian Hinder <ian.hinder at aei.mpg.de> wrote:

>
> On 10 Mar 2012, at 01:41, Jose Fiestas Iquira wrote:
>
> > Dear colleagues,
> >
> > I was trying the last days to install an own application based on ETK in
> > NERSC machines (Hopper/Carver), having some problems during the
> compilation.
> > Before trying to find the real problem, I started from scratch and
> realize
> > I can not even checkout ETK properly.
> > Does somebody tried it in machines different as LONI machines since the
> > last release? Would appreciate any experience about it.
> > Below my steps:
> >
> >
> > 1. GetComponents <Einstein Toolkit>  (release version)
> > curl -O https://raw.github.com/gridaphobe/CRL/master/GetComponents
> > ..............................
> > *183 components checked out.*
> > *  0 components updated.*
> > *
> > *
> > *  Unable to process simfactory2*
> > *  Unable to process LSUThorns/QuasiLocalMeasures*
> > *  Unable to process LSUThorns/SummationByParts*
> > *  Unable to process LSUThorns/Vectors*
>
> These are all hosted on svn.cct.lsu.edu, which we have found to be very
> unreliable.  It might be that the machine (or connection) was down when you
> tried it.  Can you try it again?
>
> We might want to think about moving these repositories to a more reliable
> server, for example svn.einsteintoolkit.org.
>
> Alternatively, it might be that there is a routing problem between NERSC
> and CCT.  Can you try
>
>        ping svn.cct.lsu.edu
>
> from one of the affected machines?
>
> PS: your WaveDemo build fails because the wavedemo thornlist is not up to
> date.  It needs to be modified to include the Vectors thorn (see the ET
> thornlist for an example).
>
> The Cactus thornlists are out of date - see
>
>        https://trac.einsteintoolkit.org/ticket/663
>
> and
>
>        https://trac.einsteintoolkit.org/ticket/641
>
> > *
> > *
> > *Summary of Warnings:*
> > *
> > *
> > *Could not checkout module simfactory2*
> > *
> > *
> > *
> > *
> > *Could not checkout module LSUThorns/QuasiLocalMeasures*
> > *
> > *
> > *
> > *
> > *Could not checkout module LSUThorns/SummationByParts*
> > *
> > *
> > *
> > *
> > *Could not checkout module LSUThorns/Vectors*
> > *
> > *
> >
> > *  Time Elapsed: 26 minutes, 19 seconds*
> > ..............................................
> >
> > 2. GetComponent  <WaveDemo>
> > ./GetComponents
> > http://cactuscode.org/documentation/tutorials/wavetoydemo/WaveDemo.th
> >
> > * Went OK*
> > *
> > *
> > 3.  cd Cactus
> > gmake WaveDemo-config
> > gmake WaveDemo
> >
> >
> > *------------------------------------------------------*
> > *Warnings were generated during execution of the CST*
> > *------------------------------------------------------*
> > *
> > *
> > *
> > *
> > *CST error 1:*
> > *  -> Duplicate thornname LocalReduce in CactusBase and CactusNumerical*
> > *
> > *
> > *
> > *
> > *CST error 2:*
> > *  -> Thorn 'CarpetLib' requires the capability 'Vectors'.*
> > *     Please add a thorn that provides 'Vectors' to your ThornList or
> > remove 'CarpetLib' from it !*
> > *
> > *
> > *
> > *
> > *CST error 3:*
> > *  -> Thorn 'ML_BSSN' requires the capability 'Vectors'.*
> > *     Please add a thorn that provides 'Vectors' to your ThornList or
> > remove 'ML_BSSN' from it !*
> > *
> > *
> > *
> > *
> > *CST error 4:*
> > *  -> Thorn 'ML_BSSN_O2' requires the capability 'Vectors'.*
> > *     Please add a thorn that provides 'Vectors' to your ThornList or
> > remove 'ML_BSSN_O2' from it !*
> > *
> > *
> > *
> > *
> > *CST error 5:*
> > *  -> ID_BIN_BH (thorn Meudon_Bin_BH) inherits from SummationByParts*
> > *     No thorn in your current ThornList implements SummationByParts*
> > *     Either remove Meudon_Bin_BH, or add a thorn to your*
> > *      ThornList implementing SummationByParts*
> > *     Available thorns in arrangements directory implementing
> > SummationByParts:*
> > *        LSUThorns/SummationByParts*
> > *
> > *
> > *
> > *
> > *CST error 6:*
> > *  -> MEUDON_BIN_NS (thorn Meudon_Bin_NS) inherits from SummationByParts*
> > *     No thorn in your current ThornList implements SummationByParts*
> > *     Either remove Meudon_Bin_NS, or add a thorn to your*
> > *      ThornList implementing SummationByParts*
> > *     Available thorns in arrangements directory implementing
> > SummationByParts:*
> > *        LSUThorns/SummationByParts*
> > *
> > *
> > *
> > *
> > *CST error 7:*
> > *  -> Configuration script for thorn BLAS returned exit code 1*
> > *     Error message: 'Error while building BLAS. Aborting.'*
> > *
> > *
> > *
> > *
> > *CST error 8:*
> > *  -> Configuration script for thorn LAPACK returned exit code 1*
> > *     Error message: 'Error while building LAPACK. Aborting.'*
> > *
> > *
> > *------------------------------------------------------*
> > *
> > *
> > *gmake[1]: ***
> >
> [/project/projectdirs/snfactry/hshukla/CACTUS/Cactus/configs/WaveDemo/config-data/make.thornlist]
> > Error 1*
> > *gmake: *** [WaveDemo] Error 2*
> > *
> > *
> > *
> > *
> > *
> > 4.  Copied LSUThorns by hand and repeated step 3 and got the same errors.
> > *
> >
> > *183 components checked out.*
> > *  0 components updated.*
> > *
> > *
> > *  Unable to process simfactory2*
> > *  Unable to process LSUThorns/QuasiLocalMeasures*
> > *  Unable to process LSUThorns/SummationByParts*
> > *  Unable to process LSUThorns/Vectors*
> > *
> > *
> > *Summary of Warnings:*
> > *
> > *
> > *Could not checkout module simfactory2*
> > *
> > *
> > *
> > *
> > *Could not checkout module LSUThorns/QuasiLocalMeasures*
> > *
> > *
> > *
> > *
> > *Could not checkout module LSUThorns/SummationByParts*
> > *
> > *
> > *
> > *
> > *Could not checkout module LSUThorns/Vectors*
> > *
> > *
> >
> > *  Time Elapsed: 26 minutes, 19 seconds*
> >
> > Best,
> > Jose
> > _______________________________________________
> > Users mailing list
> > Users at einsteintoolkit.org
> > http://lists.einsteintoolkit.org/mailman/listinfo/users
>
> --
> Ian Hinder
> http://numrel.aei.mpg.de/people/hinder
>
>
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