[Users] ETK test suite build fails for me in linking

[So Ra Chung]

Hi, I'm following the instructions on the page
https://docs.einsteintoolkit.org/et-docs/Simplified_Tutorial_for_New_Users

and during the final link I get an 'undefined reference' error (see
below).  It seems that the routine Util_CacheMalloc is defined in the
Fortran thorn in the file cctk_Cache.F90, however the object code never
seems to be supplied, i.e.
% nm cctk_Cache.F90.o
appears to contain no symbols.

So, perhaps this is a compiler error, however no errors were thrown during
the build process.

I'm not sure what to do at this point.  Can anyone advise me?

Thanks,
Sara Chung


./simfactory/bin/sim build --thornlist=manifest/einsteintoolkit.th
...

..._______________________________________________________________
Formaline: Done.
Formaline: (Formaline has finished updating the git repositories.
Formaline:  If the build process seems to hang, some other command
Formaline:  is still running, e.g. the final link stage.)

Creating cactus_sim in /home/sorachung/Cactus/exe from
EinsteinAnalysis/ADMAnalysis EinsteinBase/ADMBase EinsteinBase/ADMCoupling
EinsteinBase/ADMMacros AEIThorns/ADMMass AEIThorns/AEILocalInterp
EinsteinAnalysis/AHFinder EinsteinAnalysis/AHFinderDirect
ExternalLibraries/BLAS CactusBase/Boundary EinsteinAnalysis/CalcK
Carpet/Carpet Carpet/CarpetEvolutionMask Carpet/CarpetIOASCII
Carpet/CarpetIOBasic Carpet/CarpetIOHDF5 Carpet/CarpetIOScalar
Carpet/CarpetIntegrateTest Carpet/CarpetInterp Carpet/CarpetInterp2
Carpet/CarpetLib Carpet/CarpetMask Carpet/CarpetProlongateTest
Carpet/CarpetReduce Carpet/CarpetRegrid Carpet/CarpetRegrid2
Carpet/CarpetRegridTest Carpet/CarpetSlab Carpet/CarpetTracker
CactusBase/CartGrid3D CactusNumerical/Cartoon2D EinsteinBase/Constants
CactusBase/CoordBase EinsteinBase/CoordGauge Carpet/CycleClock
CactusExamples/DemoInterp CactusNumerical/Dissipation
EinsteinInitialData/DistortedBHIVP EinsteinAnalysis/EHFinder
EinsteinBase/EOS_Base EinsteinEOS/EOS_Hybrid EinsteinEOS/EOS_IdealFluid
EinsteinEOS/EOS_Omni EinsteinEOS/EOS_Polytrope
EinsteinExact/EinsteinExact_Test CactusElliptic/EllBase
CactusElliptic/EllSOR EinsteinInitialData/Exact EinsteinAnalysis/Extract
ExternalLibraries/FFTW3 CactusExamples/FleshInfo CactusUtils/Formaline
CactusBase/Fortran EinsteinEvolve/GRHydro EinsteinEvolve/GRHydro_InitData
ExternalLibraries/GSL EinsteinExact/GaugeWave KrancNumericalTools/GenericFD
ExternalLibraries/HDF5 CactusConnect/HTTPD CactusConnect/HTTPDExtra
CactusExamples/HelloWorld Carpet/HighOrderWaveTest EinsteinBase/HydroBase
EinsteinAnalysis/Hydro_Analysis EinsteinInitialData/Hydro_InitExcision
EinsteinInitialData/IDAnalyticBH EinsteinInitialData/IDAxiBrillBH
EinsteinInitialData/IDAxiOddBrillBH EinsteinInitialData/IDBrillData
EinsteinInitialData/IDConstraintViolate EinsteinInitialData/IDFileADM
EinsteinInitialData/IDLinearWaves CactusWave/IDScalarWave
CactusWave/IDScalarWaveC CactusWave/IDScalarWaveCXX
CactusWave/IDScalarWaveElliptic CactusExamples/IDWaveMoL CactusBase/IOASCII
CactusBase/IOBasic CactusPUGHIO/IOHDF5 CactusPUGHIO/IOHDF5Util
CactusIO/IOJpeg CactusBase/IOUtil CactusBase/InitBase
CactusNumerical/InterpToArray EinsteinExact/KerrSchild
ExternalLibraries/LAPACK ExternalLibraries/LORENE
CactusNumerical/LocalInterp CactusNumerical/LocalReduce Carpet/LoopControl
McLachlan/ML_ADMConstraints McLachlan/ML_ADMQuantities McLachlan/ML_BSSN
McLachlan/ML_BSSN_Helper McLachlan/ML_BSSN_Test McLachlan/ML_CCZ4
McLachlan/ML_CCZ4_Helper McLachlan/ML_CCZ4_Test McLachlan/ML_WaveToy
McLachlan/ML_WaveToy_Test ExternalLibraries/MPI CactusUtils/MemSpeed
EinsteinInitialData/Meudon_Bin_BH EinsteinInitialData/Meudon_Bin_NS
EinsteinInitialData/Meudon_Mag_NS EinsteinExact/Minkowski
CactusNumerical/MoL EinsteinExact/ModifiedSchwarzschildBL
EinsteinAnalysis/Multipole CactusUtils/NaNCatcher CactusUtils/NaNChecker
EinsteinEvolve/NewRad CactusUtils/Nice EinsteinInitialData/NoExcision
CactusUtils/NoMPI CactusNumerical/Noise CactusNumerical/Norms
PITTNullCode/NullConstr PITTNullCode/NullDecomp PITTNullCode/NullEvolve
PITTNullCode/NullExact PITTNullCode/NullGrid PITTNullCode/NullInterp
PITTNullCode/NullNews PITTNullCode/NullPsiInt PITTNullCode/NullSHRExtract
PITTNullCode/NullVars ExternalLibraries/OpenSSL EinsteinAnalysis/Outflow
ExternalLibraries/PAPI CactusPUGH/PUGH CactusPUGH/PUGHInterp
CactusPUGH/PUGHReduce CactusPUGH/PUGHSlab CactusNumerical/Periodic
LSUThorns/PeriodicCarpet AEIThorns/PunctureTracker
LSUThorns/QuasiLocalMeasures Carpet/ReductionTest Carpet/ReductionTest2
Carpet/ReductionTest3 CactusNumerical/ReflectionSymmetry
Carpet/RegridSyncTest EinsteinInitialData/RotatingDBHIVP
CactusNumerical/RotatingSymmetry180 CactusNumerical/RotatingSymmetry90
CactusExamples/SampleBoundary CactusExamples/SampleIO
EinsteinUtils/SetMask_SphericalSurface EinsteinExact/ShiftedGaugeWave
CactusNumerical/Slab CactusNumerical/SlabTest CactusConnect/Socket
CactusNumerical/SpaceMask PITTNullCode/SphericalHarmonicDecomp
PITTNullCode/SphericalHarmonicRecon CactusNumerical/SphericalSurface
EinsteinBase/StaticConformal LSUThorns/SummationByParts CactusBase/SymBase
AEIThorns/SystemStatistics CactusElliptic/TATelliptic
EinsteinUtils/TGRtensor EinsteinInitialData/TOVSolver
CactusUtils/TerminationTrigger CactusTest/TestArrays
Carpet/TestCarpetGridInfo CactusTest/TestComplex CactusTest/TestCoordinates
CactusTest/TestFortranCrayPointers CactusTest/TestFortranDependencies1
CactusTest/TestFortranDependencies2 CactusTest/TestFpointerNULL
CactusTest/TestFreeF90 CactusTest/TestGlobalReduce CactusTest/TestInclude1
CactusTest/TestInclude2 CactusNumerical/TestLocalReduce CactusTest/TestLoop
Carpet/TestLoopControl CactusTest/TestMath CactusTest/TestMoL
CactusTest/TestPar CactusTest/TestReduce CactusTest/TestSchedule
CactusTest/TestStrings CactusTest/TestTable CactusTest/TestTimers
CactusTest/TestTypes CactusBase/Time CactusExamples/TimerInfo
CactusUtils/TimerReport Carpet/Timers EinsteinBase/TmunuBase
AEIThorns/Trigger EinsteinInitialData/TwoPunctures EinsteinExact/Vaidya2
LSUThorns/Vectors CactusWave/WaveBinarySource CactusExamples/WaveMoL
CactusExamples/WaveToy1DF77 CactusExamples/WaveToy2DF77 CactusWave/WaveToyC
CactusWave/WaveToyCXX CactusWave/WaveToyExtra CactusWave/WaveToyF77
CactusWave/WaveToyF90 CactusWave/WaveToyFreeF90 EinsteinAnalysis/WeylScal4
ExternalLibraries/hwloc ExternalLibraries/libjpeg ExternalLibraries/zlib

/home/sorachung/Cactus/configs/sim/lib/libthorn_PUGH.a(Storage.c.o): In
function `PUGH_EnableGArrayDataStorage':
/home/sorachung/Cactus/arrangements/CactusPUGH/PUGH/src/Storage.c:646:
undefined reference to `Util_CacheMalloc'
collect2: error: ld returned 1 exit status
make[1]: *** [/home/sorachung/Cactus/exe/cactus_sim] Error 1
make: *** [sim] Error 2
sorachung at sorachung-N550JK:~/Cactus$
sorachung at sorachung-N550JK:~/Cactus$     grep -rnw . -e "Util_CacheMalloc"
./repos/cactusbase/Fortran/src/cctk_Cache.F90:8:     subroutine
Util_CacheMalloc (pointer, index, size, realstart)
./repos/cactusbase/Fortran/src/cctk_Cache.F90:14:     end subroutine
Util_CacheMalloc
./repos/cactuspugh/PUGH/src/Storage.c~:538:   @calls      Util_CacheMalloc
./repos/cactuspugh/PUGH/src/Storage.c~:646:        GA->data =
Util_CacheMalloc (GA->arrayid,
./repos/cactuspugh/PUGH/src/Storage.c:538:   @calls      Util_CacheMalloc
./repos/cactuspugh/PUGH/src/Storage.c:646:        GA->data =
Util_CacheMalloc (GA->arrayid,
./.svn/pristine/de/def745e3379fad4f949c40f811f7efd7acc3d4bf.svn-base:40:
@routine    Util_CacheMalloc
./.svn/pristine/de/def745e3379fad4f949c40f811f7efd7acc3d4bf.svn-base:75:void
*Util_CacheMalloc(unsigned int idx,
./.svn/pristine/8c/8c6f37c22be6bcd98ee2b3825f12269b225b6a77.svn-base:19:void
*Util_CacheMalloc(unsigned _index,
Binary file ./configs/sim/lib/libthorn_PUGH.a matches
Binary file ./configs/sim/build/PUGH/Storage.c.o matches
./configs/sim/build/PUGH/Storage.c:539:   @calls      Util_CacheMalloc
./configs/sim/build/PUGH/Storage.c:647:        GA->data = Util_CacheMalloc
(GA->arrayid,
./configs/sim/build/Fortran/cctk_Cache.f90:7:     subroutine
Util_CacheMalloc (pointer, index, size, realstart)
./configs/sim/build/Fortran/cctk_Cache.f90:13:     end subroutine
Util_CacheMalloc
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