[Users] failed build on local mac osx yosemite

[Comer Duncan]

Hi Ian,

I did make sure that all ports mentioned in the osx-macports.cfg  file were
done before attempting a build.  I've followed your suggestion on
rebuilding and have pasted the build log to http://pastebin.com/ka7c3QT5

Thanks for your help.

Comer


On Tue, May 19, 2015 at 6:27 PM, Ian Hinder <ian.hinder at aei.mpg.de> wrote:

>
> On 19 May 2015, at 21:03, Comer Duncan <comer.duncan at gmail.com> wrote:
>
> I have tried to build the new release on my local macbook. I am running
> Yosemite and am using the optionlist for macports.  Here is the part of the
> make which chokes:
> .
> .
> .
> Undefined symbols for architecture x86_64:
>   "MPI::Win::Free()", referenced from:
>       vtable for MPI::Win in libthorn_PeriodicCarpet.a(periodic.cc.o)
>       vtable for MPI::Win in libthorn_Carpet.a(helpers.cc.o)
>       vtable for MPI::Win in
> libthorn_CarpetEvolutionMask.a(evolution_mask.cc.o)
>       vtable for MPI::Win in libthorn_CarpetIOASCII.a(ioascii.cc.o)
>       vtable for MPI::Win in libthorn_CarpetIOBasic.a(iobasic.cc.o)
>       vtable for MPI::Win in libthorn_CarpetIOHDF5.a(Input.cc.o)
>       vtable for MPI::Win in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
>       ...
>   "MPI::Comm::Comm()", referenced from:
>       MPI::Intercomm::Merge(bool) const in
> libthorn_PeriodicCarpet.a(periodic.cc.o)
>       MPI::Intracomm::Split(int, int) const in
> libthorn_PeriodicCarpet.a(periodic.cc.o)
>       MPI::Intracomm::Create(MPI::Group const&) const in
> libthorn_PeriodicCarpet.a(periodic.cc.o)
>       MPI::Graphcomm::Clone() const in
> libthorn_PeriodicCarpet.a(periodic.cc.o)
>       MPI::Cartcomm::Clone() const in
> libthorn_PeriodicCarpet.a(periodic.cc.o)
>       MPI::Intracomm::Clone() const in
> libthorn_PeriodicCarpet.a(periodic.cc.o)
>       MPI::Intracomm::Create_graph(int, int const*, int const*, bool)
> const in libthorn_PeriodicCarpet.a(periodic.cc.o)
>       ...
>   "MPI::Datatype::Free()", referenced from:
>       vtable for MPI::Datatype in libthorn_PeriodicCarpet.a(periodic.cc.o)
>       vtable for MPI::Datatype in libthorn_Carpet.a(helpers.cc.o)
>       vtable for MPI::Datatype in
> libthorn_CarpetEvolutionMask.a(evolution_mask.cc.o)
>       vtable for MPI::Datatype in libthorn_CarpetIOASCII.a(ioascii.cc.o)
>       vtable for MPI::Datatype in libthorn_CarpetIOBasic.a(iobasic.cc.o)
>       vtable for MPI::Datatype in libthorn_CarpetIOHDF5.a(Input.cc.o)
>       vtable for MPI::Datatype in
> libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
>       ...
>   "_ompi_mpi_cxx_op_intercept", referenced from:
>       MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype
> const&), bool) in libthorn_PeriodicCarpet.a(periodic.cc.o)
>       MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype
> const&), bool) in libthorn_Carpet.a(helpers.cc.o)
>       MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype
> const&), bool) in libthorn_CarpetEvolutionMask.a(evolution_mask.cc.o)
>       MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype
> const&), bool) in libthorn_CarpetIOASCII.a(ioascii.cc.o)
>       MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype
> const&), bool) in libthorn_CarpetIOBasic.a(iobasic.cc.o)
>       MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype
> const&), bool) in libthorn_CarpetIOHDF5.a(Input.cc.o)
>       MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype
> const&), bool) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
>       ...
> ld: symbol(s) not found for architecture x86_64
> collect2: error: ld returned 1 exit status
> make[1]: *** [/Users/comerduncan/Cactus/exe/cactus_sim] Error 1
> make: *** [sim] Error 2
>
> Here is the build I did:
>
> simfactory/bin/sim build
> --optionlist=/Users/comerduncan/Cactus/simfactory/mdb/optionlists/osx-macports.cfg
>
> Can you please help me figure out what went wrong?
>
>
> Hi Comer,
>
> My guess would be that there might be more than one version of MPI
> installed, or something in the MPI configuration script didn't work quite
> right.  Did you install all the ports recommended in the comment in the
> os-macports.cfg optionlist?  Can you post the output from the full build?
> I suggest to remove the configuration
>
> rm -rf configs/sim
>
> and then build, keeping all output:
>
> simfactory/bin/sim build --optionlist=osx-macports.cfg >build.log 2>&1
>
> You could then copy and paste build.log into http://pastebin.com and
> include the link in your reply (to avoid having a large attachment on the
> mailing list).
>
> --
> Ian Hinder
> http://members.aei.mpg.de/ianhin
>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: http://lists.einsteintoolkit.org/pipermail/users/attachments/20150520/4f4272bf/attachment.html