[Users] failed build on local mac osx yosemite [SOLUTION for running HILBERT using macports]

[Ian Hinder]

On 27 May 2015, at 16:30, Roberto De Pietri <roberto.depietri at unipr.it> wrote:

> Dear Comer:
> 
> I would like to confirm you that Ian and Eric were able to correctly find out the problem that originated  the build
> problem on build using macports 
> * The HDF5 MacPorts port was updated from 1.8.14 to 1.8.15 on 16-May-2015
>  (https://trac.macports.org/log/trunk/dports/science/hdf5/Portfile), 2 days before the ET release
> * HDF5 is undefining __attribute__, and this is creating site effect  (caused by including hdf5.h)
>  that have standard c++ include to fail. This is true for gcc4.8 and gcc5.1
> * A simple solution is to change the order of includes in the include  file: 
>  arrangements/Carpet/CarpetIOHDF5/src/CarpetIOHDF5.hh. you can replace this include with the 
>  one attached to the present mail.

This seems like a viable workaround until the problem is fixed in HDF5, so I propose that it be implemented in CarpetIOHDF5 and backported to the release branch.


> * to have a fast start you may also copy the attached file: osx-macports.run in 
>   simfactory/mdb/runscript.
> * then set your local machine with the command
> 
>> simfactory/bin/sim setup
> 
> * edit the local machine file you created (using the previous command) in simfactory/mdb/machine 
>  to have:
> 
> 
> *** ASSUMING MACPORT IS INSTALLED (subversion is needed cause the version that comes with XCOde
> *** will not work [new XCODE 6.3.2 and MacPorts 2.3.3]
> 
> 
> sudo port install subversion
> sudo port install pkgconfig gcc49 fftw-3 gsl jpeg zlib hdf5 +fortran +gfortran openmpi openssl
> 
> ###  [FROM a MAIN DIRECTORY for the Cactus tree]  
> 
> curl -kLO https://raw.githubusercontent.com/gridaphobe/CRL/ET_2015_05/GetComponents
> chmod a+x GetComponents
> ./GetComponents --parallel https://bitbucket.org/einsteintoolkit/manifest/raw/ET_2015_05/einsteintoolkit.th
> 
> ### [the enter in the cactus directory]
> 
> cd Cactus
> 
> cp [where_you_save_it]/CarpetIOHDF5.hh   arrangements/Carpet/CarpetIOHDF5/src/
> cp [where_you_save_it]/osx-macports.run  simfactory/mdb/runscript
> simfactory/bin/sim setup
> 
> ### [DO the local editing. In my case was the file named]
> ### the following line should be present
> ###
> ###  optionlist      = osx-macports.cfg
> ###  runscript       = osx-macports.run
> ###  ppn             = 4
> ###  max-num-threads = 4
> ###  num-threads     = 1
> ###  nodes           = 1
> ###
> ### NOT: my machine is “iMac (27-inch, Late 2009)”
> ###   OS X Yosemite 10.10.3
> ###
> ###   Processor Name:	Intel Core i5
> ###   Processor Speed:	2,66 GHz
> ###   Number of Processors:	1
> ###   Total Number of Cores:	4
> ###   L2 Cache (per Core):	256 KB
> ###   L3 Cache:	8 MB
> ###   Memory:	8 GB
> 
> 
> simfactory/bin/sim build --thornlist thornlists/einsteintoolkit.th 
> simfactory/bin/sim create-run static_tov --parfile=par/static_tov.par --proc=4 --num-threads=2 
> 
> ### Now the test TOV simulations should be running code is running on two process using two cores each.
> 
> 
> ## sudo port install python27
> ## sudo port select —set python python27
> ## sudo port install py-numpy py-scipy 
> ## sudo port install py-matplotlib 
> ## sudo port install py-h5py
> ## sudo port install py-ipython
> ## sudo port select —set ipython ipython27
> ##
> ##
> ## TO SEE THE RESULTS: 
> 
>> ipython —-pylab
> In [..]: FILE='/Users/depietri/simulations/static_tov/output-0000/static_tov/hydrobase-rho.maximum.asc'
> In [..]: d=loadtxt(FILE)
> In [..]: plot(d[:,1],d[:,2]*1e3,'k-')
> In [..]: ylim(1.25,1.30)
> In [..]: xlabel(r’time   [CU c=1, G=1, $M_\odot$=1]')
> In [..]: ylabel(r'max($\rho \cdot 10^3$)   [CU c=1, G=1, $M_\odot$=1]')
> In [..]: 
> 
> 
> 
> <CarpetIOHDF5.hh><osx-macports.run>
> ------------------------------------------------------------------
> Roberto De Pietri        e-mail:roberto.depietri at fis.unipr.it
> Dipartimento di Fisica   http://www.fis.unipr.it/~roberto.depietri
> Universita' di Parma     tel: +39 (0521) 905280
> Via G.P.Usberti 7/A      fax: +39 (0521) 905223
> I-43100 PARMA --- ITALY
> 
> 
> 
> 
> 

-- 
Ian Hinder
http://members.aei.mpg.de/ianhin

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