[Users] failed build on local mac osx yosemite [SOLUTION for running HILBERT using macports]

[Erik Schnetter]

Instead of changing the order, can we add "#undef __attribute__" after
#inluding <hdf5.h>, with a respective comment? This would undo more of the
damage.

-erik

On Wed, May 27, 2015 at 10:48 AM, Ian Hinder <ian.hinder at aei.mpg.de> wrote:

>
> On 27 May 2015, at 16:30, Roberto De Pietri <roberto.depietri at unipr.it>
> wrote:
>
> Dear Comer:
>
> I would like to confirm you that Ian and Eric were able to correctly find
> out the problem that originated  the build
> problem on build using macports
> * The HDF5 MacPorts port was updated from 1.8.14 to 1.8.15 on 16-May-2015
>  (https://trac.macports.org/log/trunk/dports/science/hdf5/Portfile), 2
> days before the ET release
> * HDF5 is undefining __attribute__, and this is creating site effect
>  (caused by including hdf5.h)
>  that have standard c++ include to fail. This is true for gcc4.8 and gcc5.1
> * A simple solution is to change the order of includes in the include
>  file:
>  arrangements/Carpet/CarpetIOHDF5/src/CarpetIOHDF5.hh. you can replace
> this include with the
>  one attached to the present mail.
>
>
> This seems like a viable workaround until the problem is fixed in HDF5, so
> I propose that it be implemented in CarpetIOHDF5 and backported to the
> release branch.
>
>
> * to have a fast start you may also copy the attached file:
> osx-macports.run in
>   simfactory/mdb/runscript.
> * then set your local machine with the command
>
> simfactory/bin/sim setup
>
>
> * edit the local machine file you created (using the previous command) in
> simfactory/mdb/machine
>  to have:
>
>
> *** ASSUMING MACPORT IS INSTALLED (subversion is needed cause the version
> that comes with XCOde
> *** will not work [new XCODE 6.3.2 and MacPorts 2.3.3]
>
>
> sudo port install subversion
> sudo port install pkgconfig gcc49 fftw-3 gsl jpeg zlib hdf5 +fortran
> +gfortran openmpi openssl
>
> ###  [FROM a MAIN DIRECTORY for the Cactus tree]
>
> curl -kLO
> https://raw.githubusercontent.com/gridaphobe/CRL/ET_2015_05/GetComponents
> chmod a+x GetComponents
> ./GetComponents --parallel
> https://bitbucket.org/einsteintoolkit/manifest/raw/ET_2015_05/einsteintoolkit.th
>
> ### [the enter in the cactus directory]
>
> cd Cactus
>
> cp [where_you_save_it]/CarpetIOHDF5.hh
>   arrangements/Carpet/CarpetIOHDF5/src/
> cp [where_you_save_it]/osx-macports.run  simfactory/mdb/runscript
> simfactory/bin/sim setup
>
> ### [DO the local editing. In my case was the file named]
> ### the following line should be present
> ###
> ###  optionlist      = osx-macports.cfg
> ###  runscript       = osx-macports.run
> ###  ppn             = 4
> ###  max-num-threads = 4
> ###  num-threads     = 1
> ###  nodes           = 1
> ###
> ### NOT: my machine is “iMac (27-inch, Late 2009)”
> ###   OS X Yosemite 10.10.3
> ###
> ###   Processor Name: Intel Core i5
> ###   Processor Speed: 2,66 GHz
> ###   Number of Processors: 1
> ###   Total Number of Cores: 4
> ###   L2 Cache (per Core): 256 KB
> ###   L3 Cache: 8 MB
> ###   Memory: 8 GB
>
>
> simfactory/bin/sim build --thornlist thornlists/einsteintoolkit.th
> simfactory/bin/sim create-run static_tov --parfile=par/static_tov.par
> --proc=4 --num-threads=2
>
> ### Now the test TOV simulations should be running code is running on two
> process using two cores each.
>
>
> ## sudo port install python27
> ## sudo port select —set python python27
> ## sudo port install py-numpy py-scipy
> ## sudo port install py-matplotlib
> ## sudo port install py-h5py
> ## sudo port install py-ipython
> ## sudo port select —set ipython ipython27
> ##
> ##
> ## TO SEE THE RESULTS:
>
> ipython —-pylab
>
> In [..]:
> FILE='/Users/depietri/simulations/static_tov/output-0000/static_tov/hydrobase-rho.maximum.asc'
> In [..]: d=loadtxt(FILE)
> In [..]: plot(d[:,1],d[:,2]*1e3,'k-')
> In [..]: ylim(1.25,1.30)
> In [..]: xlabel(r’time   [CU c=1, G=1, $M_\odot$=1]')
> In [..]: ylabel(r'max($\rho \cdot 10^3$)   [CU c=1, G=1, $M_\odot$=1]')
> In [..]:
>
>
>
> <CarpetIOHDF5.hh><osx-macports.run>
> ------------------------------------------------------------------
> Roberto De Pietri        e-mail:roberto.depietri at fis.unipr.it
> Dipartimento di Fisica   http://www.fis.unipr.it/~roberto.depietri
> Universita' di Parma     tel: +39 (0521) 905280
> Via G.P.Usberti 7/A      fax: +39 (0521) 905223
> I-43100 PARMA --- ITALY
>
>
>
>
>
>
> --
> Ian Hinder
> http://members.aei.mpg.de/ianhin
>
>


-- 
Erik Schnetter <schnetter at cct.lsu.edu>
http://www.perimeterinstitute.ca/personal/eschnetter/
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